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README.md

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+---
+library_name: transformers
+tags: []
+---
+
+# Model Card for Model ID
+
+<!-- Provide a quick summary of what the model is/does. -->
+
+
+
+## Model Details
+
+### Model Description
+
+<!-- Provide a longer summary of what this model is. -->
+
+This is the model card of a 🤗 transformers model that has been pushed on the Hub. This model card has been automatically generated.
+
+- **Developed by:** [More Information Needed]
+- **Funded by [optional]:** [More Information Needed]
+- **Shared by [optional]:** [More Information Needed]
+- **Model type:** [More Information Needed]
+- **Language(s) (NLP):** [More Information Needed]
+- **License:** [More Information Needed]
+- **Finetuned from model [optional]:** [More Information Needed]
+
+### Model Sources [optional]
+
+<!-- Provide the basic links for the model. -->
+
+- **Repository:** [More Information Needed]
+- **Paper [optional]:** [More Information Needed]
+- **Demo [optional]:** [More Information Needed]
+
+## Uses
+
+<!-- Address questions around how the model is intended to be used, including the foreseeable users of the model and those affected by the model. -->
+
+### Direct Use
+
+<!-- This section is for the model use without fine-tuning or plugging into a larger ecosystem/app. -->
+
+[More Information Needed]
+
+### Downstream Use [optional]
+
+<!-- This section is for the model use when fine-tuned for a task, or when plugged into a larger ecosystem/app -->
+
+[More Information Needed]
+
+### Out-of-Scope Use
+
+<!-- This section addresses misuse, malicious use, and uses that the model will not work well for. -->
+
+[More Information Needed]
+
+## Bias, Risks, and Limitations
+
+<!-- This section is meant to convey both technical and sociotechnical limitations. -->
+
+[More Information Needed]
+
+### Recommendations
+
+<!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
+
+Users (both direct and downstream) should be made aware of the risks, biases and limitations of the model. More information needed for further recommendations.
+
+## How to Get Started with the Model
+
+Use the code below to get started with the model.
+
+[More Information Needed]
+
+## Training Details
+
+### Training Data
+
+<!-- This should link to a Dataset Card, perhaps with a short stub of information on what the training data is all about as well as documentation related to data pre-processing or additional filtering. -->
+
+[More Information Needed]
+
+### Training Procedure
+
+<!-- This relates heavily to the Technical Specifications. Content here should link to that section when it is relevant to the training procedure. -->
+
+#### Preprocessing [optional]
+
+[More Information Needed]
+
+
+#### Training Hyperparameters
+
+- **Training regime:** [More Information Needed] <!--fp32, fp16 mixed precision, bf16 mixed precision, bf16 non-mixed precision, fp16 non-mixed precision, fp8 mixed precision -->
+
+#### Speeds, Sizes, Times [optional]
+
+<!-- This section provides information about throughput, start/end time, checkpoint size if relevant, etc. -->
+
+[More Information Needed]
+
+## Evaluation
+
+<!-- This section describes the evaluation protocols and provides the results. -->
+
+### Testing Data, Factors & Metrics
+
+#### Testing Data
+
+<!-- This should link to a Dataset Card if possible. -->
+
+[More Information Needed]
+
+#### Factors
+
+<!-- These are the things the evaluation is disaggregating by, e.g., subpopulations or domains. -->
+
+[More Information Needed]
+
+#### Metrics
+
+<!-- These are the evaluation metrics being used, ideally with a description of why. -->
+
+[More Information Needed]
+
+### Results
+
+[More Information Needed]
+
+#### Summary
+
+
+
+## Model Examination [optional]
+
+<!-- Relevant interpretability work for the model goes here -->
+
+[More Information Needed]
+
+## Environmental Impact
+
+<!-- Total emissions (in grams of CO2eq) and additional considerations, such as electricity usage, go here. Edit the suggested text below accordingly -->
+
+Carbon emissions can be estimated using the [Machine Learning Impact calculator](https://mlco2.github.io/impact#compute) presented in [Lacoste et al. (2019)](https://arxiv.org/abs/1910.09700).
+
+- **Hardware Type:** [More Information Needed]
+- **Hours used:** [More Information Needed]
+- **Cloud Provider:** [More Information Needed]
+- **Compute Region:** [More Information Needed]
+- **Carbon Emitted:** [More Information Needed]
+
+## Technical Specifications [optional]
+
+### Model Architecture and Objective
+
+[More Information Needed]
+
+### Compute Infrastructure
+
+[More Information Needed]
+
+#### Hardware
+
+[More Information Needed]
+
+#### Software
+
+[More Information Needed]
+
+## Citation [optional]
+
+<!-- If there is a paper or blog post introducing the model, the APA and Bibtex information for that should go in this section. -->
+
+**BibTeX:**
+
+[More Information Needed]
+
+**APA:**
+
+[More Information Needed]
+
+## Glossary [optional]
+
+<!-- If relevant, include terms and calculations in this section that can help readers understand the model or model card. -->
+
+[More Information Needed]
+
+## More Information [optional]
+
+[More Information Needed]
+
+## Model Card Authors [optional]
+
+[More Information Needed]
+
+## Model Card Contact
+
+[More Information Needed]

config.json

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+{
+  "attention_probs_dropout_prob": 0.1,
+  "auto_map": {
+    "AutoConfig": "configuration_prosst.ProSSTConfig"
+  },
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "layer_norm_eps": 1e-07,
+  "mask_token_id": 24,
+  "max_position_embeddings": -1,
+  "max_relative_positions": 1024,
+  "mlm_probability": 0.15,
+  "model_type": "ProSST",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "pooler_dropout": 0.1,
+  "pooler_hidden_act": "gelu",
+  "pooler_hidden_size": 768,
+  "pooling_head": "mean",
+  "pos_att_type": [
+    "aa2pos",
+    "pos2aa",
+    "aa2ss",
+    "ss2aa"
+  ],
+  "position_biased_input": false,
+  "position_embedding_type": "relative",
+  "relative_attention": true,
+  "scale_hidden": 1,
+  "ss_vocab_size": 515,
+  "token_dropout": true,
+  "transformers_version": "4.38.2",
+  "type_vocab_size": 0,
+  "vocab_size": 25
+}

configuration_prosst.py

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+from transformers import PretrainedConfig
+
+class ProSSTConfig(PretrainedConfig):
+    model_type = "ProSST"
+
+    def __init__(
+        self,
+        token_dropout=True,
+        mlm_probability=0.15,
+        vocab_size=1024,
+        type_vocab_size=0,
+        ss_vocab_size=0,
+        hidden_size=768,
+        num_hidden_layers=12,
+        num_attention_heads=12,
+        intermediate_size=3072,
+        hidden_act="gelu",
+        hidden_dropout_prob=0.1,
+        attention_probs_dropout_prob=0.1,
+        mask_token_id=24,
+        initializer_range=0.02,
+        layer_norm_eps=1e-7,
+        pad_token_id=0,
+        position_biased_input=False,
+        pooler_dropout=0,
+        pooler_hidden_act="gelu",
+        pos_att_type=None,
+        position_embedding_type="relative",
+        max_position_embeddings=1024,
+        max_relative_positions=-1,
+        relative_attention=False,
+        pooling_head="mean",
+        scale_hidden=1,
+        **kwargs,
+    ):
+        super().__init__(**kwargs)
+        self.token_dropout = token_dropout
+        self.mlm_probability = mlm_probability
+        self.hidden_size = hidden_size
+        self.num_hidden_layers = num_hidden_layers
+        self.num_attention_heads = num_attention_heads
+        self.intermediate_size = intermediate_size
+        self.hidden_act = hidden_act
+        self.hidden_dropout_prob = hidden_dropout_prob
+        self.attention_probs_dropout_prob = attention_probs_dropout_prob
+        self.max_position_embeddings = max_position_embeddings
+        self.type_vocab_size = type_vocab_size
+        self.ss_vocab_size = ss_vocab_size
+        self.initializer_range = initializer_range
+        self.relative_attention = relative_attention
+        self.max_relative_positions = max_relative_positions
+        self.pad_token_id = pad_token_id
+        self.position_biased_input = position_biased_input
+        self.mask_token_id = mask_token_id
+        self.position_embedding_type = position_embedding_type
+        self.pooling_head = pooling_head
+        self.scale_hidden = scale_hidden
+
+        # Backwards compatibility
+        if type(pos_att_type) == str:
+            pos_att_type = [x.strip() for x in pos_att_type.lower().split("|")]
+
+        self.pos_att_type = pos_att_type
+        self.vocab_size = vocab_size
+        self.layer_norm_eps = layer_norm_eps
+
+        self.pooler_hidden_size = kwargs.get("pooler_hidden_size", hidden_size)
+        self.pooler_dropout = pooler_dropout
+        self.pooler_hidden_act = pooler_hidden_act
+        
+ProSSTConfig.register_for_auto_class()