AmelieSchreiber
/

esm2_t6_8m_qlora_binding_sites_v0

+name: esm2_binding_py38b
+channels:
+  - pytorch
+  - nvidia
+  - bioconda
+  - anaconda
+  - conda-forge
+  - defaults
+dependencies:
+  - _libgcc_mutex=0.1=main
+  - _openmp_mutex=5.1=1_gnu
+  - asttokens=2.0.5=pyhd3eb1b0_0
+  - backcall=0.2.0=pyhd3eb1b0_0
+  - biopython=1.79=py38h497a2fe_1
+  - blas=1.0=mkl
+  - blast=2.5.0=hc0b0e79_3
+  - boost=1.82.0=py38h06a4308_1
+  - brotlipy=0.7.0=py38h27cfd23_1003
+  - bzip2=1.0.8=h7b6447c_0
+  - ca-certificates=2023.08.22=h06a4308_0
+  - certifi=2023.7.22=py38h06a4308_0
+  - cffi=1.15.1=py38h5eee18b_3
+  - charset-normalizer=2.0.4=pyhd3eb1b0_0
+  - colorama=0.4.6=pyhd8ed1ab_0
+  - comm=0.1.2=py38h06a4308_0
+  - cryptography=41.0.2=py38h22a60cf_0
+  - cuda-cudart=11.8.89=0
+  - cuda-cupti=11.8.87=0
+  - cuda-libraries=11.8.0=0
+  - cuda-nvrtc=11.8.89=0
+  - cuda-nvtx=11.8.86=0
+  - cuda-runtime=11.8.0=0
+  - debugpy=1.5.1=py38h295c915_0
+  - decorator=5.1.1=pyhd3eb1b0_0
+  - entrypoints=0.4=py38h06a4308_0
+  - executing=0.8.3=pyhd3eb1b0_0
+  - ffmpeg=4.3=hf484d3e_0
+  - filelock=3.9.0=py38h06a4308_0
+  - freetype=2.12.1=h4a9f257_0
+  - giflib=5.2.1=h5eee18b_3
+  - gmp=6.2.1=h295c915_3
+  - gmpy2=2.1.2=py38heeb90bb_0
+  - gnutls=3.6.15=he1e5248_0
+  - icu=73.1=h6a678d5_0
+  - idna=3.4=py38h06a4308_0
+  - intel-openmp=2023.1.0=hdb19cb5_46305
+  - ipykernel=6.19.2=py38hb070fc8_0
+  - ipython=8.8.0=py38h06a4308_0
+  - jedi=0.18.1=py38h06a4308_1
+  - jinja2=3.1.2=py38h06a4308_0
+  - jpeg=9e=h5eee18b_1
+  - jupyter_client=7.4.8=py38h06a4308_0
+  - jupyter_core=5.1.1=py38h06a4308_0
+  - lame=3.100=h7b6447c_0
+  - lcms2=2.12=h3be6417_0
+  - ld_impl_linux-64=2.38=h1181459_1
+  - lerc=3.0=h295c915_0
+  - libboost=1.82.0=ha8e66a6_1
+  - libcublas=11.11.3.6=0
+  - libcufft=10.9.0.58=0
+  - libcufile=1.7.2.10=0
+  - libcurand=10.3.3.141=0
+  - libcusolver=11.4.1.48=0
+  - libcusparse=11.7.5.86=0
+  - libdeflate=1.17=h5eee18b_0
+  - libffi=3.4.4=h6a678d5_0
+  - libgcc-ng=11.2.0=h1234567_1
+  - libgomp=11.2.0=h1234567_1
+  - libiconv=1.16=h7f8727e_2
+  - libidn2=2.3.4=h5eee18b_0
+  - libnpp=11.8.0.86=0
+  - libnvjpeg=11.9.0.86=0
+  - libpng=1.6.39=h5eee18b_0
+  - libsodium=1.0.18=h7b6447c_0
+  - libstdcxx-ng=11.2.0=h1234567_1
+  - libtasn1=4.19.0=h5eee18b_0
+  - libtiff=4.5.1=h6a678d5_0
+  - libunistring=0.9.10=h27cfd23_0
+  - libwebp=1.2.4=h11a3e52_1
+  - libwebp-base=1.2.4=h5eee18b_1
+  - lightning-utilities=0.9.0=pyhd8ed1ab_0
+  - lz4-c=1.9.4=h6a678d5_0
+  - markupsafe=2.1.1=py38h7f8727e_0
+  - matplotlib-inline=0.1.6=py38h06a4308_0
+  - mkl=2023.1.0=h213fc3f_46343
+  - mkl-service=2.4.0=py38h5eee18b_1
+  - mkl_fft=1.3.6=py38h417a72b_1
+  - mkl_random=1.2.2=py38h417a72b_1
+  - mpc=1.1.0=h10f8cd9_1
+  - mpfr=4.0.2=hb69a4c5_1
+  - mpmath=1.3.0=py38h06a4308_0
+  - ncurses=6.4=h6a678d5_0
+  - nest-asyncio=1.5.6=py38h06a4308_0
+  - nettle=3.7.3=hbbd107a_1
+  - networkx=3.1=py38h06a4308_0
+  - numpy=1.24.3=py38hf6e8229_1
+  - numpy-base=1.24.3=py38h060ed82_1
+  - openh264=2.1.1=h4ff587b_0
+  - openssl=3.0.11=h7f8727e_2
+  - packaging=22.0=py38h06a4308_0
+  - parso=0.8.3=pyhd3eb1b0_0
+  - pexpect=4.8.0=pyhd3eb1b0_3
+  - pickleshare=0.7.5=pyhd3eb1b0_1003
+  - pillow=9.4.0=py38h6a678d5_0
+  - pip=23.2.1=py38h06a4308_0
+  - platformdirs=2.5.2=py38h06a4308_0
+  - prompt-toolkit=3.0.36=py38h06a4308_0
+  - ptyprocess=0.7.0=pyhd3eb1b0_2
+  - pure_eval=0.2.2=pyhd3eb1b0_0
+  - py-boost=1.82.0=py38h3c18c91_1
+  - pycparser=2.21=pyhd3eb1b0_0
+  - pygments=2.11.2=pyhd3eb1b0_0
+  - pyopenssl=23.2.0=py38h06a4308_0
+  - pysocks=1.7.1=py38h06a4308_0
+  - python=3.8.17=h955ad1f_0
+  - python-dateutil=2.8.2=pyhd3eb1b0_0
+  - python_abi=3.8=2_cp38
+  - pytorch=2.0.1=py3.8_cuda11.8_cudnn8.7.0_0
+  - pytorch-cuda=11.8=h7e8668a_5
+  - pytorch-mutex=1.0=cuda
+  - pyzmq=23.2.0=py38h6a678d5_0
+  - readline=8.2=h5eee18b_0
+  - requests=2.31.0=py38h06a4308_0
+  - setuptools=68.0.0=py38h06a4308_0
+  - six=1.16.0=pyhd3eb1b0_1
+  - sqlite=3.41.2=h5eee18b_0
+  - stack_data=0.2.0=pyhd3eb1b0_0
+  - sympy=1.11.1=py38h06a4308_0
+  - tbb=2021.8.0=hdb19cb5_0
+  - tk=8.6.12=h1ccaba5_0
+  - torchaudio=2.0.2=py38_cu118
+  - torchmetrics=1.1.2=pyhd8ed1ab_0
+  - torchtriton=2.0.0=py38
+  - torchvision=0.15.2=py38_cu118
+  - tornado=6.2=py38h5eee18b_0
+  - tqdm=4.66.1=pyhd8ed1ab_0
+  - traitlets=5.7.1=py38h06a4308_0
+  - typing_extensions=4.7.1=py38h06a4308_0
+  - urllib3=1.26.16=py38h06a4308_0
+  - wcwidth=0.2.5=pyhd3eb1b0_0
+  - wheel=0.38.4=py38h06a4308_0
+  - xz=5.4.2=h5eee18b_0
+  - zeromq=4.3.4=h2531618_0
+  - zlib=1.2.13=h5eee18b_0
+  - zstd=1.5.5=hc292b87_0
+  - pip:
+      - accelerate==0.22.0
+      - aiohttp==3.8.5
+      - aiosignal==1.3.1
+      - async-timeout==4.0.3
+      - attrs==23.1.0
+      - click==8.1.7
+      - datasets==2.14.5
+      - dill==0.3.7
+      - docker-pycreds==0.4.0
+      - frozenlist==1.4.0
+      - fsspec==2023.6.0
+      - gitdb==4.0.10
+      - gitpython==3.1.35
+      - huggingface-hub==0.17.3
+      - multidict==6.0.4
+      - multiprocess==0.70.15
+      - pathtools==0.1.2
+      - peft==0.5.0
+      - protobuf==4.24.3
+      - psutil==5.9.5
+      - pyarrow==13.0.0
+      - pyyaml==6.0.1
+      - regex==2023.8.8
+      - safetensors==0.3.3
+      - scikit-learn==1.3.0
+      - sentry-sdk==1.30.0
+      - setproctitle==1.3.2
+      - smmap==5.0.0
+      - threadpoolctl==3.2.0
+      - tokenizers==0.13.3
+      - transformers==4.33.1
+      - wandb==0.15.10
+      - xxhash==3.3.0
+      - yarl==1.9.2
+prefix: /home/ubuntu/miniconda3/envs/esm2_binding_py38b
+# pip install git+https://github.com/Amelie-Schreiber/transformers.git@esm_checkpointing
+# pip install --upgrade git+https://github.com/huggingface/transformers.git