G2PTL / modeling_G2PTL.py
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G2PTL update
42e1290
#! python3
# -*- encoding: utf-8 -*-
from copy import deepcopy
from torch.nn.init import xavier_uniform_
import torch.nn.functional as F
from torch.nn import Parameter
from torch.nn.init import normal_
import torch.utils.checkpoint
from torch import Tensor, device
from .G2PTL_utils import *
from transformers.modeling_utils import ModuleUtilsMixin
from .graphormer import Graphormer3D
import pickle
from transformers.modeling_outputs import ModelOutput
import numpy as np
# with open('remap_code_2_chn.bin', 'rb') as fr:
# remap_code_2_chn = pickle.loads(fr.read())
from .htc_loss import HTCLoss
from transformers.utils.hub import cached_file
remap_code_2_chn_file_path = cached_file(
'Cainiao-AI/G2PTL',
'remap_code_2_chn.pkl',
)
class G2PTLEmbedding(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.hidden_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.hidden_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.hidden_size)
self.ner_type_embeddings = nn.Embedding(10, config.hidden_size)
self.use_task_id = config.use_task_id
if config.use_task_id:
self.task_type_embeddings = nn.Embedding(config.task_type_vocab_size, config.hidden_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
self.register_buffer("position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)))
self.register_buffer("token_type_ids", torch.zeros(self.position_ids.size(), dtype=torch.long),
persistent=False)
self._reset_parameters()
def forward(
self,
input_ids: Optional[torch.LongTensor] = None,
token_type_ids: Optional[torch.LongTensor] = None,
ner_type_ids: Optional[torch.LongTensor] = None,
task_type_ids: Optional[torch.LongTensor] = None,
position_ids: Optional[torch.LongTensor] = None,
inputs_embeds: Optional[torch.FloatTensor] = None,
past_key_values_length: int = 0,
) -> torch.Tensor:
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, past_key_values_length: seq_length + past_key_values_length]
# Setting the token_type_ids to the registered buffer in constructor where it is all zeros, which usually occurs
# when its auto-generated, registered buffer helps users when tracing the model without passing token_type_ids, solves
# issue #5664
if token_type_ids is None:
if hasattr(self, "token_type_ids"):
buffered_token_type_ids = self.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(input_shape[0], seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
if ner_type_ids is not None:
ner_type_embeddings = self.ner_type_embeddings(ner_type_ids)
embeddings = inputs_embeds + token_type_embeddings + ner_type_embeddings
else:
embeddings = inputs_embeds + token_type_embeddings
if self.position_embedding_type == "absolute":
position_embeddings = self.position_embeddings(position_ids)
embeddings += position_embeddings
if self.use_task_id:
if task_type_ids is None:
task_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
task_type_embeddings = self.task_type_embeddings(task_type_ids)
embeddings += task_type_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
def _reset_parameters(self):
for p in self.parameters():
if p.dim() > 1:
normal_(p, mean=0.0, std=0.02)
def save_weights(self, path):
torch.save(self.state_dict(), path)
def load_weights(self, path):
self.load_state_dict(torch.load(path))
# Copied from transformers.models.bert.modeling_bert.BertSelfAttention with Bert
class TransformerSelfAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number of attention "
f"heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = position_embedding_type or getattr(
config, "position_embedding_type", "absolute"
)
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
self.max_position_embeddings = config.max_position_embeddings
self.distance_embedding = nn.Embedding(2 * config.max_position_embeddings - 1, self.attention_head_size)
self.is_decoder = config.is_decoder
def transpose_for_scores(self, x: torch.Tensor) -> torch.Tensor:
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
mixed_query_layer = self.query(hidden_states)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
is_cross_attention = encoder_hidden_states is not None
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_layer = past_key_value[0]
value_layer = past_key_value[1]
attention_mask = encoder_attention_mask
elif is_cross_attention:
key_layer = self.transpose_for_scores(self.key(encoder_hidden_states))
value_layer = self.transpose_for_scores(self.value(encoder_hidden_states))
attention_mask = encoder_attention_mask
elif past_key_value is not None:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
key_layer = torch.cat([past_key_value[0], key_layer], dim=2)
value_layer = torch.cat([past_key_value[1], value_layer], dim=2)
else:
key_layer = self.transpose_for_scores(self.key(hidden_states))
value_layer = self.transpose_for_scores(self.value(hidden_states))
query_layer = self.transpose_for_scores(mixed_query_layer)
use_cache = past_key_value is not None
if self.is_decoder:
# if cross_attention save Tuple(torch.Tensor, torch.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(torch.Tensor, torch.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_layer, value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
if self.position_embedding_type == "relative_key" or self.position_embedding_type == "relative_key_query":
query_length, key_length = query_layer.shape[2], key_layer.shape[2]
if use_cache:
position_ids_l = torch.tensor(key_length - 1, dtype=torch.long, device=hidden_states.device).view(
-1, 1
)
else:
position_ids_l = torch.arange(query_length, dtype=torch.long, device=hidden_states.device).view(-1, 1)
position_ids_r = torch.arange(key_length, dtype=torch.long, device=hidden_states.device).view(1, -1)
distance = position_ids_l - position_ids_r
positional_embedding = self.distance_embedding(distance + self.max_position_embeddings - 1)
positional_embedding = positional_embedding.to(dtype=query_layer.dtype) # fp16 compatibility
if self.position_embedding_type == "relative_key":
relative_position_scores = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores
elif self.position_embedding_type == "relative_key_query":
relative_position_scores_query = torch.einsum("bhld,lrd->bhlr", query_layer, positional_embedding)
relative_position_scores_key = torch.einsum("bhrd,lrd->bhlr", key_layer, positional_embedding)
attention_scores = attention_scores + relative_position_scores_query + relative_position_scores_key
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in TransformerModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
if self.is_decoder:
outputs = outputs + (past_key_value,)
return outputs
# Copied from transformers.models.bert.modeling_bert.BertSelfOutput with Bert
class TransformerSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertAttention with Bert
class TransformerAttention(nn.Module):
def __init__(self, config, position_embedding_type=None):
super().__init__()
self.self = TransformerSelfAttention(config, position_embedding_type=position_embedding_type)
self.output = TransformerSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.bert.modeling_bert.BertIntermediate with Bert
class TransformerIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOutput with Bert
class TransformerOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states: torch.Tensor, input_tensor: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLayer
class TransformerLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = TransformerAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
if not self.is_decoder:
raise ValueError(f"{self} should be used as a decoder model if cross attention is added")
self.crossattention = TransformerAttention(config, position_embedding_type="absolute")
self.intermediate = TransformerIntermediate(config)
self.output = TransformerOutput(config)
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_value: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
output_attentions: Optional[bool] = False,
) -> Tuple[torch.Tensor]:
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
past_key_value=self_attn_past_key_value,
)
attention_output = self_attention_outputs[0]
# if decoder, the last output is tuple of self-attn cache
if self.is_decoder:
outputs = self_attention_outputs[1:-1]
present_key_value = self_attention_outputs[-1]
else:
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
cross_attn_present_key_value = None
if self.is_decoder and encoder_hidden_states is not None:
if not hasattr(self, "crossattention"):
raise ValueError(
f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers"
" by setting `config.add_cross_attention=True`"
)
# cross_attn cached key/values tuple is at positions 3,4 of past_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
cross_attn_past_key_value,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:-1] # add cross attentions if we output attention weights
# add cross-attn cache to positions 3,4 of present_key_value tuple
cross_attn_present_key_value = cross_attention_outputs[-1]
present_key_value = present_key_value + cross_attn_present_key_value
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
# if decoder, return the attn key/values as the last output
if self.is_decoder:
outputs = outputs + (present_key_value,)
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class TransformerEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([TransformerLayer(config) for _ in range(config.num_hidden_layers)])
self.gradient_checkpointing = False
def forward(
self,
hidden_states: torch.Tensor,
attention_mask: Optional[torch.FloatTensor] = None,
head_mask: Optional[torch.FloatTensor] = None,
encoder_hidden_states: Optional[torch.FloatTensor] = None,
encoder_attention_mask: Optional[torch.FloatTensor] = None,
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = False,
output_hidden_states: Optional[bool] = False,
return_dict: Optional[bool] = True,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPastAndCrossAttentions]:
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
next_decoder_cache = () if use_cache else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
past_key_value = past_key_values[i] if past_key_values is not None else None
if self.gradient_checkpointing and self.training:
if use_cache:
logger.warning(
"`use_cache=True` is incompatible with gradient checkpointing. Setting `use_cache=False`..."
)
use_cache = False
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, past_key_value, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
past_key_value,
output_attentions,
)
hidden_states = layer_outputs[0]
if use_cache:
next_decoder_cache += (layer_outputs[-1],)
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
# Copied from transformers.models.bert.modeling_bert.BertPooler
class Pooler(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class TransformerModel(nn.Module):
"""
"""
def __init__(self, config, add_pooling_layer=True):
super().__init__()
self.config = config
self.encoder = TransformerEncoder(config)
self.pooler = Pooler(config) if add_pooling_layer else None
# Initialize weights and apply final processing
self._reset_parameters()
# Copied from transformers.models.bert.modeling_bert.BertModel._prune_heads
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
def forward(
self,
h_input,
input_ids: Optional[torch.Tensor] = None,
attention_mask: Optional[torch.Tensor] = None,
token_type_ids: Optional[torch.Tensor] = None,
task_type_ids: Optional[torch.Tensor] = None,
position_ids: Optional[torch.Tensor] = None,
head_mask: Optional[torch.Tensor] = None,
inputs_embeds: Optional[torch.Tensor] = None,
encoder_hidden_states: Optional[torch.Tensor] = None,
encoder_attention_mask: Optional[torch.Tensor] = None,
past_key_values: Optional[List[torch.FloatTensor]] = None,
use_cache: Optional[bool] = None,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
) -> Union[Tuple[torch.Tensor], BaseModelOutputWithPoolingAndCrossAttentions]:
r"""
encoder_hidden_states (`torch.FloatTensor` of shape `(batch_size, sequence_length, hidden_size)`, *optional*):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention if
the model is configured as a decoder.
encoder_attention_mask (`torch.FloatTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid performing attention on the padding token indices of the encoder input. This mask is used in
the cross-attention if the model is configured as a decoder. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
past_key_values (`tuple(tuple(torch.FloatTensor))` of length `config.n_layers` with each tuple having 4 tensors of shape `(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If `past_key_values` are used, the user can optionally input only the last `decoder_input_ids` (those that
don't have their past key value states given to this model) of shape `(batch_size, 1)` instead of all
`decoder_input_ids` of shape `(batch_size, sequence_length)`.
use_cache (`bool`, *optional*):
If set to `True`, `past_key_values` key value states are returned and can be used to speed up decoding (see
`past_key_values`).
"""
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if self.config.is_decoder:
use_cache = use_cache if use_cache is not None else self.config.use_cache
else:
use_cache = False
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
batch_size, seq_length = input_shape
device = input_ids.device if input_ids is not None else inputs_embeds.device
# past_key_values_length
past_key_values_length = past_key_values[0][0].shape[2] if past_key_values is not None else 0
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length + past_key_values_length)), device=device)
if token_type_ids is None:
if hasattr(self.embeddings, "token_type_ids"):
buffered_token_type_ids = self.embeddings.token_type_ids[:, :seq_length]
buffered_token_type_ids_expanded = buffered_token_type_ids.expand(batch_size, seq_length)
token_type_ids = buffered_token_type_ids_expanded
else:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape)
# If a 2D or 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_extended_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_extended_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
encoder_outputs = self.encoder(
h_input,
attention_mask=extended_attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_extended_attention_mask,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
def get_extended_attention_mask(
self, attention_mask: Tensor, input_shape: Tuple[int], device: device = None, dtype: torch.float = None
) -> Tensor:
"""
Makes broadcastable attention and causal masks so that future and masked tokens are ignored.
Arguments:
attention_mask (`torch.Tensor`):
Mask with ones indicating tokens to attend to, zeros for tokens to ignore.
input_shape (`Tuple[int]`):
The shape of the input to the model.
Returns:
`torch.Tensor` The extended attention mask, with a the same dtype as `attention_mask.dtype`.
"""
if dtype is None:
dtype = torch.float32
if not (attention_mask.dim() == 2 and self.config.is_decoder):
# show warning only if it won't be shown in `create_extended_attention_mask_for_decoder`
if device is not None:
warnings.warn(
"The `device` argument is deprecated and will be removed in v5 of Transformers.", FutureWarning
)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
if attention_mask.dim() == 3:
extended_attention_mask = attention_mask[:, None, :, :]
elif attention_mask.dim() == 2:
# Provided a padding mask of dimensions [batch_size, seq_length]
# - if the model is a decoder, apply a causal mask in addition to the padding mask
# - if the model is an encoder, make the mask broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.is_decoder:
extended_attention_mask = ModuleUtilsMixin.create_extended_attention_mask_for_decoder(
input_shape, attention_mask, device
)
else:
extended_attention_mask = attention_mask[:, None, None, :]
else:
raise ValueError(
f"Wrong shape for input_ids (shape {input_shape}) or attention_mask (shape {attention_mask.shape})"
)
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and the dtype's smallest value for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = extended_attention_mask.to(dtype=dtype) # fp16 compatibility
extended_attention_mask = (1.0 - extended_attention_mask) * torch.finfo(dtype).min
return extended_attention_mask
def get_head_mask(
self, head_mask: Optional[Tensor], num_hidden_layers: int, is_attention_chunked: bool = False
) -> Tensor:
"""
Prepare the head mask if needed.
Args:
head_mask (`torch.Tensor` with shape `[num_heads]` or `[num_hidden_layers x num_heads]`, *optional*):
The mask indicating if we should keep the heads or not (1.0 for keep, 0.0 for discard).
num_hidden_layers (`int`):
The number of hidden layers in the model.
is_attention_chunked: (`bool`, *optional*, defaults to `False`):
Whether or not the attentions scores are computed by chunks or not.
Returns:
`torch.Tensor` with shape `[num_hidden_layers x batch x num_heads x seq_length x seq_length]` or list with
`[None]` for each layer.
"""
if head_mask is not None:
head_mask = self._convert_head_mask_to_5d(head_mask, num_hidden_layers)
if is_attention_chunked is True:
head_mask = head_mask.unsqueeze(-1)
else:
head_mask = [None] * num_hidden_layers
return head_mask
def _reset_parameters(self):
r"""Initiate parameters in the transformer model."""
for p in self.parameters():
if p.dim() > 1:
normal_(p, mean=0.0, std=self.config.initializer_range)
def save_weights(self, path):
torch.save(self.state_dict(), path)
def load_weights(self, path):
self.load_state_dict(torch.load(path))
@dataclass
@dataclass
class G2PTLMaskedLMOutput(ModelOutput):
"""
Base class for masked language models outputs.
Args:
loss (`torch.FloatTensor` of shape `(1,)`, *optional*, returned when `labels` is provided):
Masked language modeling (MLM) loss.
logits (`torch.FloatTensor` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
hidden_states (`tuple(torch.FloatTensor)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `torch.FloatTensor` (one for the output of the embeddings, if the model has an embedding layer, +
one for the output of each layer) of shape `(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the optional initial embedding outputs.
attentions (`tuple(torch.FloatTensor)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `torch.FloatTensor` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
gc_layer_out: Optional[torch.FloatTensor] = None
final_pooler_output: Optional[torch.FloatTensor] = None
final_hidden_state: Optional[torch.FloatTensor] = None
last_hidden_state: Optional[torch.FloatTensor] = None
htc_layer_out: Optional[Tuple[torch.FloatTensor]] = None
from transformers.activations import ACT2FN
# Copied from transformers.models.bert.modeling_bert.BertPredictionHeadTransform with Bert
class TransformerPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states: torch.Tensor) -> torch.Tensor:
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertLMPredictionHead with Bert
class TransformerLMPredictionHead(nn.Module):
def __init__(self, config):
super().__init__()
self.transform = TransformerPredictionHeadTransform(config)
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = self.decoder(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_bert.BertOnlyMLMHead with Bert->Transformer
class TransformerOnlyMLMHead(nn.Module):
def __init__(self, config):
super().__init__()
self.predictions = TransformerLMPredictionHead(config)
def forward(self, sequence_output: torch.Tensor) -> torch.Tensor:
prediction_scores = self.predictions(sequence_output)
return prediction_scores
class G2PTL(PreTrainedModel):
def __init__(self, config, return_last_hidden_state=False):
super(G2PTL, self).__init__(config)
self.config = deepcopy(config)
self.return_last_hidden_state = return_last_hidden_state
self.dropout = nn.Dropout(self.config.hidden_dropout_prob)
# ================ G2PTLEmbedding =====================
self.embedding = G2PTLEmbedding(self.config)
# ================ TransformerModel =====================
self.G2PTL_config = deepcopy(config)
self.transformer_model = TransformerModel(self.G2PTL_config)
# ================ TranSAGE =====================
self.graphormer = Graphormer3D()
# ================ Encoding =====================
self.encoder_config = deepcopy(config)
self.encoder_config.num_hidden_layers = 1
self.encoder = TransformerModel(self.encoder_config)
self.encoder_out_dim = self.encoder_config.hidden_size
# ================ GC =====================
self.gc_trans = nn.Linear(self.encoder_out_dim, 16 * 33, bias=True)
# ================ MLM =====================
self.cls = TransformerOnlyMLMHead(self.G2PTL_config)
# ================ HTC =====================
self.htc_trans = nn.Linear(self.encoder_out_dim, 5 * 100, bias=True)
# ================ alias =====================
self.down_hidden_dim = 512
self.down_kernel_num = 128
self.alias_trans = nn.Linear(self.encoder_out_dim, self.down_hidden_dim, bias=True)
self.alias_trans2 = torch.nn.Conv2d(1, self.down_kernel_num, (2, self.down_hidden_dim), stride=1, bias=True)
self.alias_layer = nn.Linear(self.down_kernel_num * 5, 2 * 5, bias=True)
# ================ AOI =====================
self.aoi_trans = nn.Linear(self.encoder_out_dim, self.down_hidden_dim, bias=True)
self.aoi_trans2 = torch.nn.Conv2d(1, self.down_kernel_num, (2, self.down_hidden_dim), stride=1, bias=True)
self.aoi_layer = nn.Linear(self.down_kernel_num * 5, 2 * 5, bias=True)
self._reset_parameters()
def forward(self,
input_ids,
attention_mask : Optional[torch.Tensor] = None,
token_type_ids : Optional[torch.Tensor] = None,
node_position_ids: Optional[torch.Tensor] = None,
spatial_pos: Optional[torch.Tensor] = None,
in_degree: Optional[torch.Tensor] = None,
out_degree: Optional[torch.Tensor] = None,
edge_type_matrix: Optional[torch.Tensor] = None,
edge_input : Optional[torch.Tensor] = None,
prov_city_mask: Optional[torch.Tensor] = None,
sequence_len : Optional[int] = 1,
labels: Optional[torch.Tensor] = None
):
"""
:param input_ids: [sequence_len * batch_size, src_len]
:param attention_mask: [sequence_len * batch_size, src_len]
:param token_type_ids: [sequence_len * batch_size, src_len]
:param sequence_len: int
:param labels:
:param is_eval: bool
:return:
"""
batch_size_input = int(input_ids.shape[0] / sequence_len)
# If the model inputs missing graph information, a single-node subgraph is constructed by default.
if spatial_pos is None:
# The shortest path length between nodes in the graph
spatial_pos = torch.LongTensor(np.zeros((batch_size_input, 1, 1), dtype=np.int64)).to(self.device)
if in_degree is None:
# The in-degree of nodes in the graph
in_degree = torch.LongTensor(np.ones((batch_size_input, 1), dtype=np.int64)).to(self.device)
if out_degree is None:
# The out-degree of nodes in the graph
out_degree = torch.LongTensor(np.ones((batch_size_input, 1), dtype=np.int64)).to(self.device)
if edge_type_matrix is None:
# The edge type of edges in the graph
edge_type_matrix = torch.LongTensor(8*np.ones((batch_size_input, 1, 1), dtype=np.int64)).to(self.device)
if edge_input is None:
# The shortest path route between nodes in the graph
edge_input = torch.LongTensor(8*np.ones((batch_size_input, 1, 1, 1), dtype=np.int64)).to(self.device)
if node_position_ids is None:
# node poistion ids
node_position_ids = torch.tensor(np.ones((batch_size_input, 1), dtype=np.int64)).to(self.device)
embedding_output = self.embedding(input_ids=input_ids, token_type_ids=token_type_ids)
transformer_predictions = self.transformer_model(embedding_output,
input_ids=input_ids,
token_type_ids=token_type_ids,
attention_mask=attention_mask)
last_hidden_state = transformer_predictions[0].contiguous().view(batch_size_input, sequence_len, -1,
self.encoder_out_dim)
pooler_output = transformer_predictions[1].contiguous().view(batch_size_input, sequence_len, self.encoder_out_dim)
h_ = self.graphormer(pooler_output, spatial_pos, in_degree, out_degree, edge_type_matrix, edge_input, node_position_ids)
h_ = h_.unsqueeze(2)
new_hidden_state = torch.cat((h_, last_hidden_state[:, :, 1:, :]), dim=2)
new_hidden_state = new_hidden_state.contiguous().view(batch_size_input * sequence_len, -1, self.encoder_out_dim)
encoder_outputs = self.encoder(new_hidden_state,
input_ids=input_ids,
token_type_ids=token_type_ids,
attention_mask=attention_mask)
final_hidden_state = encoder_outputs[0]
final_pooler_output = encoder_outputs[1].contiguous().view(batch_size_input, sequence_len, self.encoder_out_dim)
prediction_scores = self.cls(final_hidden_state) # Logits For MLM
gc_layer_out = self.gc_trans(final_pooler_output)
gc_layer_out = gc_layer_out.contiguous().view(-1, 16) # Logits For GC
htc_layer_out = self.htc_trans(final_pooler_output)
htc_layer_out = htc_layer_out.contiguous().view(-1, 100) # Logits For HTC
masked_lm_loss = None
# MLM loss
if labels is not None:
loss_fct = CrossEntropyLoss() # -100 index = padding token
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if self.return_last_hidden_state:
return final_pooler_output, pooler_output
return G2PTLMaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=final_hidden_state,
attentions=encoder_outputs.attentions,
gc_layer_out = gc_layer_out,
final_pooler_output = final_pooler_output,
final_hidden_state = final_hidden_state,
last_hidden_state = last_hidden_state,
htc_layer_out = htc_layer_out
)
def get_htc_code(self, htc_layer_out):
htc_loss_fct = HTCLoss(device=self.device, reduction='mean')
htc_pred = htc_loss_fct.get_htc_code(htc_layer_out)
return htc_pred
def decode_htc_code_2_chn(self, htc_pred):
with open(remap_code_2_chn_file_path, 'rb') as fr:
remap_code_2_chn = pickle.loads(fr.read())
htc_pred = np.array(htc_pred).reshape(-1, 5)
htc_res = []
for arr in htc_pred:
htc_res.append(remap_code_2_chn['{:02d}{:02d}{:02d}{:01d}{:02d}'.format(arr[0], arr[1], arr[2], arr[3], arr[4])])
return htc_res
def _reset_parameters(self):
for p in self.parameters():
if p.dim() > 1:
xavier_uniform_(p)
def save_weights(self, path):
torch.save(self.state_dict(), path)
def load_weights(self, path):
self.load_state_dict(torch.load(path, map_location=torch.device('cpu')), False)