agemagician
commited on
Commit
•
72868d8
1
Parent(s):
94933e3
upload flax model
Browse files- config.json +31 -0
- flax_model.msgpack +3 -0
- special_tokens_map.json +124 -0
- tokenizer.json +1721 -0
- tokenizer_config.json +127 -0
config.json
ADDED
@@ -0,0 +1,31 @@
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{
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"_name_or_path": "ElnaggarLab/ankh-base-encoder",
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"architectures": [
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"T5EncoderModel"
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],
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"d_ff": 3072,
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"d_kv": 64,
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"d_model": 768,
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"decoder_start_token_id": 0,
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"dense_act_fn": "gelu_new",
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"dropout_rate": 0.0,
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"eos_token_id": 1,
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"feed_forward_proj": "gated-gelu",
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"initializer_factor": 1.0,
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"is_encoder_decoder": true,
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"is_gated_act": true,
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"layer_norm_epsilon": 1e-06,
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"model_type": "t5",
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"num_decoder_layers": 24,
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"num_heads": 12,
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"num_layers": 48,
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"output_past": true,
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"pad_token_id": 0,
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"relative_attention_max_distance": 128,
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"relative_attention_num_buckets": 64,
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"tie_word_embeddings": false,
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"torch_dtype": "float32",
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"transformers_version": "4.29.2",
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"use_cache": true,
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"vocab_size": 144
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}
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flax_model.msgpack
ADDED
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:dd9353d81213f45a9e820eafad543b026499b915c4ae774b765ef37c7c96613e
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size 1812701720
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special_tokens_map.json
ADDED
@@ -0,0 +1,124 @@
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{
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"additional_special_tokens": [
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"<extra_id_0>",
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"<extra_id_1>",
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"<extra_id_2>",
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"<extra_id_3>",
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"<extra_id_4>",
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"<extra_id_5>",
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"<extra_id_6>",
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"<extra_id_7>",
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"<extra_id_8>",
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"<extra_id_9>",
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"<extra_id_10>",
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"<extra_id_11>",
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"<extra_id_12>",
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"<extra_id_13>",
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"<extra_id_14>",
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"<extra_id_15>",
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"<extra_id_16>",
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"<extra_id_17>",
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"<extra_id_18>",
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"<extra_id_19>",
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"<extra_id_20>",
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"<extra_id_21>",
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"<extra_id_22>",
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"<extra_id_23>",
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"<extra_id_24>",
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"<extra_id_25>",
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"<extra_id_26>",
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"<extra_id_27>",
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"<extra_id_28>",
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"<extra_id_29>",
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"<extra_id_30>",
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"<extra_id_31>",
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"<extra_id_32>",
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"<extra_id_33>",
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"<extra_id_34>",
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"<extra_id_35>",
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"<extra_id_36>",
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"<extra_id_37>",
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"<extra_id_38>",
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"<extra_id_39>",
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"<extra_id_40>",
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"<extra_id_41>",
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"<extra_id_42>",
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"<extra_id_43>",
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"<extra_id_44>",
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"<extra_id_45>",
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"<extra_id_46>",
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"<extra_id_47>",
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"<extra_id_48>",
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"<extra_id_49>",
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"<extra_id_50>",
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"<extra_id_51>",
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"<extra_id_52>",
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"<extra_id_53>",
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"<extra_id_54>",
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"<extra_id_55>",
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"<extra_id_56>",
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"<extra_id_57>",
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"<extra_id_58>",
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"<extra_id_59>",
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"<extra_id_60>",
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"<extra_id_61>",
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"<extra_id_62>",
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"<extra_id_63>",
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"<extra_id_64>",
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"<extra_id_65>",
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"<extra_id_66>",
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"<extra_id_67>",
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"<extra_id_68>",
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"<extra_id_69>",
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"<extra_id_70>",
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"<extra_id_71>",
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"<extra_id_72>",
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"<extra_id_73>",
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"<extra_id_74>",
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"<extra_id_75>",
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"<extra_id_76>",
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"<extra_id_77>",
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"<extra_id_78>",
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"<extra_id_79>",
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"<extra_id_80>",
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"<extra_id_81>",
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"<extra_id_82>",
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"<extra_id_83>",
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"<extra_id_84>",
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"<extra_id_85>",
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"<extra_id_86>",
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"<extra_id_87>",
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"<extra_id_88>",
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"<extra_id_89>",
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"<extra_id_90>",
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"<extra_id_91>",
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"<extra_id_92>",
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"<extra_id_93>",
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"<extra_id_94>",
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"<extra_id_95>",
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"<extra_id_96>",
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"<extra_id_97>",
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"<extra_id_98>",
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"<extra_id_99>",
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"<extra_id_100>",
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"<extra_id_101>",
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"<extra_id_102>",
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"<extra_id_103>",
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"<extra_id_104>",
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"<extra_id_105>",
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"<extra_id_106>",
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"<extra_id_107>",
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"<extra_id_108>",
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"<extra_id_109>",
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"<extra_id_110>",
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"<extra_id_111>",
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"<extra_id_112>",
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"<extra_id_113>",
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"<extra_id_114>",
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"<extra_id_115>"
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],
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"eos_token": "</s>",
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"mask_token": "<extra_id_0>",
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"pad_token": "<pad>",
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"unk_token": "<unk>"
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}
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tokenizer.json
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|
1 |
+
{
|
2 |
+
"version": "1.0",
|
3 |
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"truncation": null,
|
4 |
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"padding": null,
|
5 |
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"added_tokens": [
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6 |
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{
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7 |
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"id": 0,
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8 |
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"content": "<pad>",
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9 |
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10 |
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11 |
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"rstrip": false,
|
12 |
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"normalized": false,
|
13 |
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"special": true
|
14 |
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},
|
15 |
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{
|
16 |
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"id": 1,
|
17 |
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"content": "</s>",
|
18 |
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"single_word": false,
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19 |
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"lstrip": false,
|
20 |
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"rstrip": false,
|
21 |
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22 |
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"special": true
|
23 |
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},
|
24 |
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{
|
25 |
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"id": 2,
|
26 |
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"content": "<unk>",
|
27 |
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|
28 |
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|
29 |
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"rstrip": false,
|
30 |
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"normalized": false,
|
31 |
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"special": true
|
32 |
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},
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33 |
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{
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34 |
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"id": 28,
|
35 |
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36 |
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37 |
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38 |
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39 |
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40 |
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|
41 |
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},
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42 |
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{
|
43 |
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"id": 29,
|
44 |
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"content": "<extra_id_114>",
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45 |
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46 |
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47 |
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|
48 |
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"normalized": false,
|
49 |
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"special": true
|
50 |
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},
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51 |
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{
|
52 |
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|
53 |
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"content": "<extra_id_113>",
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54 |
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55 |
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56 |
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57 |
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58 |
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|
59 |
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},
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60 |
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{
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61 |
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62 |
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"content": "<extra_id_112>",
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63 |
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64 |
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66 |
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67 |
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68 |
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69 |
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{
|
70 |
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71 |
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"content": "<extra_id_111>",
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72 |
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"single_word": false,
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73 |
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75 |
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"normalized": false,
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76 |
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"special": true
|
77 |
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78 |
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{
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79 |
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"id": 33,
|
80 |
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"content": "<extra_id_110>",
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81 |
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"single_word": false,
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82 |
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83 |
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84 |
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"normalized": false,
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85 |
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"special": true
|
86 |
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},
|
87 |
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{
|
88 |
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|
89 |
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"content": "<extra_id_109>",
|
90 |
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"single_word": false,
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91 |
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|
92 |
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|
93 |
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"normalized": false,
|
94 |
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"special": true
|
95 |
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},
|
96 |
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{
|
97 |
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0.0
|
1542 |
+
],
|
1543 |
+
[
|
1544 |
+
"<extra_id_43>",
|
1545 |
+
0.0
|
1546 |
+
],
|
1547 |
+
[
|
1548 |
+
"<extra_id_42>",
|
1549 |
+
0.0
|
1550 |
+
],
|
1551 |
+
[
|
1552 |
+
"<extra_id_41>",
|
1553 |
+
0.0
|
1554 |
+
],
|
1555 |
+
[
|
1556 |
+
"<extra_id_40>",
|
1557 |
+
0.0
|
1558 |
+
],
|
1559 |
+
[
|
1560 |
+
"<extra_id_39>",
|
1561 |
+
0.0
|
1562 |
+
],
|
1563 |
+
[
|
1564 |
+
"<extra_id_38>",
|
1565 |
+
0.0
|
1566 |
+
],
|
1567 |
+
[
|
1568 |
+
"<extra_id_37>",
|
1569 |
+
0.0
|
1570 |
+
],
|
1571 |
+
[
|
1572 |
+
"<extra_id_36>",
|
1573 |
+
0.0
|
1574 |
+
],
|
1575 |
+
[
|
1576 |
+
"<extra_id_35>",
|
1577 |
+
0.0
|
1578 |
+
],
|
1579 |
+
[
|
1580 |
+
"<extra_id_34>",
|
1581 |
+
0.0
|
1582 |
+
],
|
1583 |
+
[
|
1584 |
+
"<extra_id_33>",
|
1585 |
+
0.0
|
1586 |
+
],
|
1587 |
+
[
|
1588 |
+
"<extra_id_32>",
|
1589 |
+
0.0
|
1590 |
+
],
|
1591 |
+
[
|
1592 |
+
"<extra_id_31>",
|
1593 |
+
0.0
|
1594 |
+
],
|
1595 |
+
[
|
1596 |
+
"<extra_id_30>",
|
1597 |
+
0.0
|
1598 |
+
],
|
1599 |
+
[
|
1600 |
+
"<extra_id_29>",
|
1601 |
+
0.0
|
1602 |
+
],
|
1603 |
+
[
|
1604 |
+
"<extra_id_28>",
|
1605 |
+
0.0
|
1606 |
+
],
|
1607 |
+
[
|
1608 |
+
"<extra_id_27>",
|
1609 |
+
0.0
|
1610 |
+
],
|
1611 |
+
[
|
1612 |
+
"<extra_id_26>",
|
1613 |
+
0.0
|
1614 |
+
],
|
1615 |
+
[
|
1616 |
+
"<extra_id_25>",
|
1617 |
+
0.0
|
1618 |
+
],
|
1619 |
+
[
|
1620 |
+
"<extra_id_24>",
|
1621 |
+
0.0
|
1622 |
+
],
|
1623 |
+
[
|
1624 |
+
"<extra_id_23>",
|
1625 |
+
0.0
|
1626 |
+
],
|
1627 |
+
[
|
1628 |
+
"<extra_id_22>",
|
1629 |
+
0.0
|
1630 |
+
],
|
1631 |
+
[
|
1632 |
+
"<extra_id_21>",
|
1633 |
+
0.0
|
1634 |
+
],
|
1635 |
+
[
|
1636 |
+
"<extra_id_20>",
|
1637 |
+
0.0
|
1638 |
+
],
|
1639 |
+
[
|
1640 |
+
"<extra_id_19>",
|
1641 |
+
0.0
|
1642 |
+
],
|
1643 |
+
[
|
1644 |
+
"<extra_id_18>",
|
1645 |
+
0.0
|
1646 |
+
],
|
1647 |
+
[
|
1648 |
+
"<extra_id_17>",
|
1649 |
+
0.0
|
1650 |
+
],
|
1651 |
+
[
|
1652 |
+
"<extra_id_16>",
|
1653 |
+
0.0
|
1654 |
+
],
|
1655 |
+
[
|
1656 |
+
"<extra_id_15>",
|
1657 |
+
0.0
|
1658 |
+
],
|
1659 |
+
[
|
1660 |
+
"<extra_id_14>",
|
1661 |
+
0.0
|
1662 |
+
],
|
1663 |
+
[
|
1664 |
+
"<extra_id_13>",
|
1665 |
+
0.0
|
1666 |
+
],
|
1667 |
+
[
|
1668 |
+
"<extra_id_12>",
|
1669 |
+
0.0
|
1670 |
+
],
|
1671 |
+
[
|
1672 |
+
"<extra_id_11>",
|
1673 |
+
0.0
|
1674 |
+
],
|
1675 |
+
[
|
1676 |
+
"<extra_id_10>",
|
1677 |
+
0.0
|
1678 |
+
],
|
1679 |
+
[
|
1680 |
+
"<extra_id_9>",
|
1681 |
+
0.0
|
1682 |
+
],
|
1683 |
+
[
|
1684 |
+
"<extra_id_8>",
|
1685 |
+
0.0
|
1686 |
+
],
|
1687 |
+
[
|
1688 |
+
"<extra_id_7>",
|
1689 |
+
0.0
|
1690 |
+
],
|
1691 |
+
[
|
1692 |
+
"<extra_id_6>",
|
1693 |
+
0.0
|
1694 |
+
],
|
1695 |
+
[
|
1696 |
+
"<extra_id_5>",
|
1697 |
+
0.0
|
1698 |
+
],
|
1699 |
+
[
|
1700 |
+
"<extra_id_4>",
|
1701 |
+
0.0
|
1702 |
+
],
|
1703 |
+
[
|
1704 |
+
"<extra_id_3>",
|
1705 |
+
0.0
|
1706 |
+
],
|
1707 |
+
[
|
1708 |
+
"<extra_id_2>",
|
1709 |
+
0.0
|
1710 |
+
],
|
1711 |
+
[
|
1712 |
+
"<extra_id_1>",
|
1713 |
+
0.0
|
1714 |
+
],
|
1715 |
+
[
|
1716 |
+
"<extra_id_0>",
|
1717 |
+
0.0
|
1718 |
+
]
|
1719 |
+
]
|
1720 |
+
}
|
1721 |
+
}
|
tokenizer_config.json
ADDED
@@ -0,0 +1,127 @@
|
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|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
{
|
2 |
+
"additional_special_tokens": [
|
3 |
+
"<extra_id_0>",
|
4 |
+
"<extra_id_1>",
|
5 |
+
"<extra_id_2>",
|
6 |
+
"<extra_id_3>",
|
7 |
+
"<extra_id_4>",
|
8 |
+
"<extra_id_5>",
|
9 |
+
"<extra_id_6>",
|
10 |
+
"<extra_id_7>",
|
11 |
+
"<extra_id_8>",
|
12 |
+
"<extra_id_9>",
|
13 |
+
"<extra_id_10>",
|
14 |
+
"<extra_id_11>",
|
15 |
+
"<extra_id_12>",
|
16 |
+
"<extra_id_13>",
|
17 |
+
"<extra_id_14>",
|
18 |
+
"<extra_id_15>",
|
19 |
+
"<extra_id_16>",
|
20 |
+
"<extra_id_17>",
|
21 |
+
"<extra_id_18>",
|
22 |
+
"<extra_id_19>",
|
23 |
+
"<extra_id_20>",
|
24 |
+
"<extra_id_21>",
|
25 |
+
"<extra_id_22>",
|
26 |
+
"<extra_id_23>",
|
27 |
+
"<extra_id_24>",
|
28 |
+
"<extra_id_25>",
|
29 |
+
"<extra_id_26>",
|
30 |
+
"<extra_id_27>",
|
31 |
+
"<extra_id_28>",
|
32 |
+
"<extra_id_29>",
|
33 |
+
"<extra_id_30>",
|
34 |
+
"<extra_id_31>",
|
35 |
+
"<extra_id_32>",
|
36 |
+
"<extra_id_33>",
|
37 |
+
"<extra_id_34>",
|
38 |
+
"<extra_id_35>",
|
39 |
+
"<extra_id_36>",
|
40 |
+
"<extra_id_37>",
|
41 |
+
"<extra_id_38>",
|
42 |
+
"<extra_id_39>",
|
43 |
+
"<extra_id_40>",
|
44 |
+
"<extra_id_41>",
|
45 |
+
"<extra_id_42>",
|
46 |
+
"<extra_id_43>",
|
47 |
+
"<extra_id_44>",
|
48 |
+
"<extra_id_45>",
|
49 |
+
"<extra_id_46>",
|
50 |
+
"<extra_id_47>",
|
51 |
+
"<extra_id_48>",
|
52 |
+
"<extra_id_49>",
|
53 |
+
"<extra_id_50>",
|
54 |
+
"<extra_id_51>",
|
55 |
+
"<extra_id_52>",
|
56 |
+
"<extra_id_53>",
|
57 |
+
"<extra_id_54>",
|
58 |
+
"<extra_id_55>",
|
59 |
+
"<extra_id_56>",
|
60 |
+
"<extra_id_57>",
|
61 |
+
"<extra_id_58>",
|
62 |
+
"<extra_id_59>",
|
63 |
+
"<extra_id_60>",
|
64 |
+
"<extra_id_61>",
|
65 |
+
"<extra_id_62>",
|
66 |
+
"<extra_id_63>",
|
67 |
+
"<extra_id_64>",
|
68 |
+
"<extra_id_65>",
|
69 |
+
"<extra_id_66>",
|
70 |
+
"<extra_id_67>",
|
71 |
+
"<extra_id_68>",
|
72 |
+
"<extra_id_69>",
|
73 |
+
"<extra_id_70>",
|
74 |
+
"<extra_id_71>",
|
75 |
+
"<extra_id_72>",
|
76 |
+
"<extra_id_73>",
|
77 |
+
"<extra_id_74>",
|
78 |
+
"<extra_id_75>",
|
79 |
+
"<extra_id_76>",
|
80 |
+
"<extra_id_77>",
|
81 |
+
"<extra_id_78>",
|
82 |
+
"<extra_id_79>",
|
83 |
+
"<extra_id_80>",
|
84 |
+
"<extra_id_81>",
|
85 |
+
"<extra_id_82>",
|
86 |
+
"<extra_id_83>",
|
87 |
+
"<extra_id_84>",
|
88 |
+
"<extra_id_85>",
|
89 |
+
"<extra_id_86>",
|
90 |
+
"<extra_id_87>",
|
91 |
+
"<extra_id_88>",
|
92 |
+
"<extra_id_89>",
|
93 |
+
"<extra_id_90>",
|
94 |
+
"<extra_id_91>",
|
95 |
+
"<extra_id_92>",
|
96 |
+
"<extra_id_93>",
|
97 |
+
"<extra_id_94>",
|
98 |
+
"<extra_id_95>",
|
99 |
+
"<extra_id_96>",
|
100 |
+
"<extra_id_97>",
|
101 |
+
"<extra_id_98>",
|
102 |
+
"<extra_id_99>",
|
103 |
+
"<extra_id_100>",
|
104 |
+
"<extra_id_101>",
|
105 |
+
"<extra_id_102>",
|
106 |
+
"<extra_id_103>",
|
107 |
+
"<extra_id_104>",
|
108 |
+
"<extra_id_105>",
|
109 |
+
"<extra_id_106>",
|
110 |
+
"<extra_id_107>",
|
111 |
+
"<extra_id_108>",
|
112 |
+
"<extra_id_109>",
|
113 |
+
"<extra_id_110>",
|
114 |
+
"<extra_id_111>",
|
115 |
+
"<extra_id_112>",
|
116 |
+
"<extra_id_113>",
|
117 |
+
"<extra_id_114>",
|
118 |
+
"<extra_id_115>"
|
119 |
+
],
|
120 |
+
"eos_token": "</s>",
|
121 |
+
"extra_ids": 116,
|
122 |
+
"name_or_path": "agemagician/protx-base-1gspan-partreconstruction-20mlmp-encl48-decl24-ramd128-ranb64-resume-1",
|
123 |
+
"pad_token": "<pad>",
|
124 |
+
"special_tokens_map_file": "tokenizer/protein_t5_fast_tokenizer_v4/special_tokens_map.json",
|
125 |
+
"tokenizer_class": "T5Tokenizer",
|
126 |
+
"unk_token": "<unk>"
|
127 |
+
}
|