File size: 12,978 Bytes
0ce6a44 |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 |
Residue conformations -------------------------------------------
A6 : G O4p_endo anti
A7 : G O4p_endo anti
A8 : G C3p_endo anti
A9 : A C3p_exo anti
A10 : A C4p_exo anti
A11 : G O4p_endo anti
A12 : A O4p_endo anti
A13 : A C3p_exo anti
A14 : A C4p_exo anti
A15 : C C2p_endo anti
A16 : U C3p_endo anti
A17 : G C3p_endo anti
A18 : U C3p_endo anti
A33 : A C2p_exo anti
A34 : G C1p_exo syn
A35 : C C2p_exo anti
A41 : AMP
Adjacent stackings ----------------------------------------------
A6-A7 : adjacent_5p upward
A7-A8 : adjacent_5p upward
A9-A10 : adjacent_5p upward
A13-A14 : adjacent_5p upward
A14-A15 : adjacent_5p upward
A15-A16 : adjacent_5p upward pairing
A16-A17 : adjacent_5p upward
A33-A34 : adjacent_5p inward
Non-Adjacent stackings ------------------------------------------
A11-A35 : upward pairing
A12-A34 : upward pairing
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX
A7-A11 : G-G Ww/Hh pairing antiparallel trans
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing
A8-A10 : G-A O2'/Hh pairing
A8-A11 : G-G Ww/O2P pairing
A9-A16 : A-U Bs/Ss pairing parallel trans one_hbond
A10-A15 : A-C O2'/Bh pairing
A10-A17 : A-G Bs/Ss Ww/O2' pairing parallel trans one_hbond
A11-A12 : G-A O2'/Hh adjacent_5p pairing
A11-A13 : G-A O2P/Bh O2P/Hh pairing
A11-A34 : G-G Bs/O2' Ss/O2' pairing
A11-A35 : G-C O2'/Bh Bs/O2P upward pairing
A12-A16 : A-U Bs/Wh pairing parallel trans one_hbond
A12-A34 : A-G O2'/Bs Bh/O2' Hh/O2' upward pairing
A15-A16 : C-U O2'/Hh adjacent_5p upward pairing
A17-A34 : G-G Ww/Hh pairing parallel cis one_hbond
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX
Residue conformations -------------------------------------------
A6 : G O4p_endo anti
A7 : G O4p_endo anti
A8 : G C2p_exo anti
A9 : A C3p_exo anti
A10 : A O4p_endo anti
A11 : G O4p_endo anti
A12 : A O4p_endo anti
A13 : A C3p_exo anti
A14 : A O4p_endo anti
A15 : C O4p_endo anti
A16 : U C3p_endo anti
A17 : G C3p_endo anti
A18 : U C3p_endo anti
A33 : A C2p_exo anti
A34 : G C1p_exo syn
A35 : C C2p_exo anti
A41 : AMP
Adjacent stackings ----------------------------------------------
A6-A7 : adjacent_5p upward
A7-A8 : adjacent_5p upward
A9-A10 : adjacent_5p upward
A14-A15 : adjacent_5p upward
A15-A16 : adjacent_5p upward
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A33-A34 : adjacent_5p inward
Non-Adjacent stackings ------------------------------------------
A11-A35 : upward pairing
A12-A34 : upward pairing
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX
A7-A11 : G-G Ww/Hh pairing antiparallel trans VII
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing
A8-A10 : G-A O2'/Hh pairing
A8-A11 : G-G Ww/O2P pairing
A9-A16 : A-U Bs/Ss pairing antiparallel trans one_hbond
A10-A15 : A-C O2'/Bh pairing
A10-A17 : A-G Bs/Ss pairing parallel trans one_hbond
A11-A14 : G-A O2P/Bh pairing
A11-A34 : G-G Bs/O2' Ss/O2' pairing
A11-A35 : G-C O2'/Bh Bs/O2P upward pairing
A12-A16 : A-U Bs/Wh pairing parallel trans one_hbond
A12-A34 : A-G O2'/Bs Hh/O2' upward pairing
A17-A34 : G-G Ww/Hh pairing parallel cis VI
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX
Residue conformations -------------------------------------------
A6 : G O4p_endo anti
A7 : G O4p_endo anti
A8 : G C3p_endo anti
A9 : A C3p_exo anti
A10 : A C3p_endo anti
A11 : G O4p_endo anti
A12 : A O4p_endo anti
A13 : A C3p_exo anti
A14 : A O4p_endo anti
A15 : C O4p_endo anti
A16 : U C3p_endo anti
A17 : G C3p_endo anti
A18 : U C2p_exo anti
A33 : A C1p_endo anti
A34 : G C3p_exo syn
A35 : C C2p_exo anti
A41 : AMP
Adjacent stackings ----------------------------------------------
A6-A7 : adjacent_5p upward
A7-A8 : adjacent_5p upward
A9-A10 : adjacent_5p upward
A13-A14 : adjacent_5p upward
A14-A15 : adjacent_5p upward
A15-A16 : adjacent_5p upward
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A33-A34 : adjacent_5p inward
Non-Adjacent stackings ------------------------------------------
A11-A35 : upward pairing
A12-A34 : upward pairing
Number of stackings = 11
Number of adjacent stackings = 9
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX
A7-A11 : G-G Ww/Hh pairing antiparallel trans VII
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing
A8-A10 : G-A O2'/Hh pairing
A8-A11 : G-G Ww/O2P pairing
A9-A16 : A-U Bs/Ss pairing parallel trans one_hbond
A10-A15 : A-C O2'/Ww O2'/Bh pairing
A10-A16 : A-U O2'/Ww pairing
A10-A17 : A-G Bs/Ss Ww/O2' pairing parallel trans one_hbond
A11-A12 : G-A Ss/Hw adjacent_5p pairing antiparallel cis one_hbond
A11-A34 : G-G Bs/O2' Ss/O2' pairing
A11-A35 : G-C O2'/Bh upward pairing
A12-A16 : A-U Bs/Wh pairing parallel trans one_hbond
A12-A34 : A-G O2'/Bs upward pairing
A17-A34 : G-G Ww/Hw pairing parallel cis one_hbond
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX
Residue conformations -------------------------------------------
A6 : G O4p_endo anti
A7 : G O4p_endo anti
A8 : G C3p_endo anti
A9 : A C2p_exo anti
A10 : A C4p_exo anti
A11 : G O4p_endo anti
A12 : A O4p_endo anti
A13 : A C4p_exo anti
A14 : A O4p_endo anti
A15 : C C2p_endo anti
A16 : U C3p_endo anti
A17 : G C2p_exo anti
A18 : U C2p_exo anti
A33 : A C2p_exo anti
A34 : G C2p_endo syn
A35 : C C2p_exo anti
A41 : AMP
Adjacent stackings ----------------------------------------------
A6-A7 : adjacent_5p upward
A7-A8 : adjacent_5p upward
A9-A10 : adjacent_5p upward
A15-A16 : adjacent_5p upward
A16-A17 : adjacent_5p upward
A33-A34 : adjacent_5p inward
Non-Adjacent stackings ------------------------------------------
A11-A35 : upward pairing
A12-A34 : upward pairing
Number of stackings = 8
Number of adjacent stackings = 6
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX
A7-A11 : G-G Ww/Hh pairing antiparallel trans one_hbond
A8-A9 : G-A O2'/Bh O2'/Hh adjacent_5p pairing
A8-A10 : G-A O2'/Hh Hh/O2P pairing
A8-A11 : G-G Ww/O2P pairing
A10-A15 : A-C O2'/Bh pairing
A10-A17 : A-G Bs/Ss pairing parallel trans one_hbond
A11-A13 : G-A O2P/Bh O2P/Hh pairing
A11-A34 : G-G Bs/O2' Ss/O2' pairing
A11-A35 : G-C O2'/Bh upward pairing
A12-A34 : A-G O2'/Bs Hh/O2' upward pairing
A14-A34 : A-G O2P/Ww pairing
A17-A34 : G-G Ww/Hw pairing parallel cis one_hbond
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX
Residue conformations -------------------------------------------
A6 : G O4p_endo anti
A7 : G O4p_endo anti
A8 : G C2p_exo anti
A9 : A C2p_exo anti
A10 : A C2p_exo anti
A11 : G O4p_endo anti
A12 : A O4p_endo anti
A13 : A O4p_endo anti
A14 : A O4p_endo anti
A15 : C C3p_endo anti
A16 : U C3p_endo anti
A17 : G C2p_exo anti
A18 : U C3p_endo anti
A33 : A C2p_exo anti
A34 : G C2p_endo syn
A35 : C C2p_exo anti
A41 : AMP
Adjacent stackings ----------------------------------------------
A6-A7 : adjacent_5p inward pairing
A7-A8 : adjacent_5p outward pairing
A9-A10 : adjacent_5p upward
A13-A14 : adjacent_5p upward
A14-A15 : adjacent_5p upward
A15-A16 : adjacent_5p upward
A16-A17 : adjacent_5p upward
A33-A34 : adjacent_5p inward
Non-Adjacent stackings ------------------------------------------
A11-A35 : upward pairing
A12-A34 : upward pairing
Number of stackings = 10
Number of adjacent stackings = 8
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A6-A7 : G-G O2'/Hh adjacent_5p inward pairing
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX
A7-A8 : G-G O2'/Hh adjacent_5p outward pairing
A9-A14 : A-A O2'/Bh pairing
A11-A34 : G-G Bs/O2' pairing
A11-A35 : G-C O2'/Bh upward pairing
A12-A34 : A-G O2'/Bs Hh/O2' upward pairing
A17-A34 : G-G Ww/Hw pairing parallel cis one_hbond
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX
Residue conformations -------------------------------------------
A6 : G C4p_exo anti
A7 : G O4p_endo anti
A8 : G C2p_exo anti
A9 : A C2p_endo anti
A10 : A C4p_exo anti
A11 : G O4p_endo anti
A12 : A O4p_endo anti
A13 : A O4p_endo anti
A14 : A C4p_exo anti
A15 : C C2p_endo anti
A16 : U C3p_endo anti
A17 : G C3p_endo anti
A18 : U C3p_endo anti
A33 : A C2p_exo anti
A34 : G C1p_exo syn
A35 : C C2p_exo anti
A41 : AMP
Adjacent stackings ----------------------------------------------
A6-A7 : adjacent_5p inward
A7-A8 : adjacent_5p outward pairing
A9-A10 : adjacent_5p upward
A13-A14 : adjacent_5p upward
A14-A15 : adjacent_5p upward
A15-A16 : adjacent_5p upward
A16-A17 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A33-A34 : adjacent_5p inward
Non-Adjacent stackings ------------------------------------------
A11-A35 : upward
A12-A34 : upward pairing
Number of stackings = 11
Number of adjacent stackings = 9
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX
A7-A8 : G-G O2'/Hh adjacent_5p outward pairing
A8-A9 : G-A Ww/O2' Ss/O2' adjacent_5p pairing
A8-A11 : G-G Ww/O2P pairing
A10-A14 : A-A O2P/Bh pairing
A10-A17 : A-G Bs/Ss pairing parallel trans one_hbond
A11-A13 : G-A O2P/Hh pairing
A11-A34 : G-G Bs/O2' Ss/O2' pairing
A12-A34 : A-G O2'/Bs Bh/O2' Hh/O2' upward pairing
A17-A34 : G-G Ww/Hh pairing parallel cis one_hbond
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX
Residue conformations -------------------------------------------
A6 : G C2p_endo anti
A7 : G O4p_endo anti
A8 : G O4p_endo anti
A9 : A C2p_endo anti
A10 : A O4p_endo anti
A11 : G O4p_endo anti
A12 : A O4p_endo anti
A13 : A C2p_exo anti
A14 : A C2p_exo anti
A15 : C C4p_exo anti
A16 : U O4p_endo anti
A17 : G C3p_endo anti
A18 : U C2p_exo anti
A33 : A C2p_exo anti
A34 : G C3p_exo syn
A35 : C C2p_exo anti
A41 : AMP
Adjacent stackings ----------------------------------------------
A6-A7 : adjacent_5p upward pairing
A7-A8 : adjacent_5p upward
A15-A16 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A33-A34 : adjacent_5p inward
Non-Adjacent stackings ------------------------------------------
A11-A35 : upward pairing
A12-A34 : upward pairing
Number of stackings = 7
Number of adjacent stackings = 5
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A6-A7 : G-G O2'/C8 adjacent_5p upward pairing
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX
A7-A11 : G-G Ww/Hh pairing antiparallel trans VII
A8-A10 : G-A C8/O2P pairing
A8-A11 : G-G Ww/O2P pairing
A9-A10 : A-A O2'/Hh O2'/C8 C8/O2P adjacent_5p pairing
A9-A16 : A-U Ww/O2' pairing
A10-A17 : A-G Ww/O2' Bh/O2' pairing
A11-A12 : G-A Ss/Hw O2'/Hh adjacent_5p pairing antiparallel cis one_hbond
A11-A34 : G-G Bs/O2' Ss/O2' pairing
A11-A35 : G-C O2'/Bh upward pairing
A12-A34 : A-G O2'/Ww O2'/Bs upward pairing
A13-A14 : A-A O2P/Hh adjacent_5p pairing
A14-A17 : A-G Wh/Wh pairing parallel cis one_hbond 66
A14-A34 : A-G Wh/Wh pairing parallel cis one_hbond 66
A16-A17 : U-G O2P/Hh adjacent_5p pairing
A17-A34 : G-G Ww/Hh pairing parallel cis VI
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX
Residue conformations -------------------------------------------
A6 : G O4p_endo anti
A7 : G O4p_endo anti
A8 : G C3p_endo anti
A9 : A C3p_exo anti
A10 : A C4p_exo anti
A11 : G O4p_endo anti
A12 : A O4p_endo anti
A13 : A C4p_endo anti
A14 : A O4p_endo anti
A15 : C C1p_exo anti
A16 : U C3p_endo anti
A17 : G C2p_exo anti
A18 : U C2p_exo anti
A33 : A C2p_exo anti
A34 : G C3p_exo syn
A35 : C C2p_exo anti
A41 : AMP
Adjacent stackings ----------------------------------------------
A6-A7 : adjacent_5p upward pairing
A7-A8 : adjacent_5p upward
A9-A10 : adjacent_5p outward pairing
A13-A14 : adjacent_5p upward
A15-A16 : adjacent_5p upward
A17-A18 : adjacent_5p upward
A33-A34 : adjacent_5p inward
Non-Adjacent stackings ------------------------------------------
A11-A35 : upward pairing
A12-A34 : upward pairing
Number of stackings = 9
Number of adjacent stackings = 7
Number of non adjacent stackings = 2
Base-pairs ------------------------------------------------------
A6-A7 : G-G O2'/C8 adjacent_5p upward pairing
A6-A35 : G-C Ww/Ww pairing antiparallel cis XIX
A7-A11 : G-G Ww/Hh pairing antiparallel trans
A8-A10 : G-A Hh/O2P pairing
A8-A11 : G-G Ww/O2P pairing
A9-A10 : A-A O2'/Hh adjacent_5p outward pairing
A9-A15 : A-C Hw/Ww pairing parallel trans one_hbond
A10-A17 : A-G Ww/O2' pairing
A11-A12 : G-A Ss/Hw O2'/Hh adjacent_5p pairing parallel cis one_hbond
A11-A34 : G-G Bs/O2' Ss/O2' pairing
A11-A35 : G-C O2'/Bh upward pairing
A12-A13 : A-A O2'/Hh adjacent_5p pairing
A12-A34 : A-G O2'/Bs upward pairing
A14-A15 : A-C O2'/Hh adjacent_5p pairing
A17-A34 : G-G Ww/Hh pairing parallel cis VI
A18-A33 : U-A Ww/Ww pairing antiparallel cis XX
|