|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C4p_exo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C4p_exo anti |
|
A9 : A C4p_exo anti |
|
A10 : U C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C4p_exo anti |
|
A14 : U C4p_exo anti |
|
A15 : C C3p_endo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
B1 : G C3p_endo anti |
|
B2 : C C3p_endo anti |
|
B3 : A C3p_endo anti |
|
B4 : C C3p_endo anti |
|
B5 : C C3p_endo anti |
|
B6 : G C4p_exo anti |
|
B7 : A C3p_endo anti |
|
B8 : A C3p_endo anti |
|
B9 : C C4p_exo anti |
|
B10 : C C4p_exo anti |
|
B11 : A C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : C C3p_endo anti |
|
B14 : C C2p_exo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : U C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A5-A18 : outward |
|
A7-A16 : outward |
|
A7-B7 : upward |
|
A9-B13 : outward |
|
B3-B18 : outward |
|
B5-B16 : outward |
|
B6-B15 : outward |
|
Number of stackings = 31 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 8 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B12 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B11 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-B8 : U-A Ww/Ww pairing antiparallel cis XX |
|
A14-B7 : U-A Ww/Ww pairing antiparallel cis XX |
|
B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B3-B17 : A-U Ww/Ww pairing antiparallel cis XX |
|
B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C2p_exo anti |
|
A10 : U C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
B1 : G C3p_endo anti |
|
B2 : C C3p_endo anti |
|
B3 : A C3p_endo anti |
|
B4 : C C3p_endo anti |
|
B5 : C C3p_endo anti |
|
B6 : G C3p_endo anti |
|
B7 : A C4p_exo anti |
|
B8 : A C4p_exo anti |
|
B9 : C C4p_exo anti |
|
B10 : C C4p_exo anti |
|
B11 : A C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : C C3p_endo anti |
|
B14 : C C4p_exo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : U C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A4-A19 : outward |
|
A5-A18 : outward |
|
A7-A16 : outward |
|
A7-B7 : upward |
|
A8-B6 : downward |
|
A8-B14 : outward |
|
A9-B13 : outward |
|
A14-B8 : outward |
|
A15-B7 : outward |
|
B5-B16 : outward |
|
B6-B15 : outward |
|
Number of stackings = 31 |
|
Number of adjacent stackings = 20 |
|
Number of non adjacent stackings = 11 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B12 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B11 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-B8 : U-A Ww/Ww pairing antiparallel cis XX |
|
A14-B7 : U-A Ww/Ww pairing antiparallel cis XX |
|
B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B3-B17 : A-U Ww/Ww pairing antiparallel cis XX |
|
B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C4p_exo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : U C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C4p_exo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
B1 : G C3p_endo anti |
|
B2 : C C3p_endo anti |
|
B3 : A C3p_endo anti |
|
B4 : C C3p_endo anti |
|
B5 : C C4p_exo anti |
|
B6 : G C3p_endo anti |
|
B7 : A C4p_exo anti |
|
B8 : A C4p_exo anti |
|
B9 : C C3p_endo anti |
|
B10 : C C3p_endo anti |
|
B11 : A C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : C C3p_endo anti |
|
B14 : C C4p_exo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : U C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
A20-A21 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A18 : outward |
|
A7-A16 : outward |
|
A7-B7 : upward |
|
A8-B6 : downward |
|
A8-B14 : outward |
|
A11-B11 : outward |
|
A12-B10 : outward |
|
A14-B8 : outward |
|
B5-B16 : outward |
|
B6-B15 : outward |
|
Number of stackings = 35 |
|
Number of adjacent stackings = 25 |
|
Number of non adjacent stackings = 10 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B12 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B11 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-B8 : U-A Ww/Ww pairing antiparallel cis XX |
|
A14-B7 : U-A Ww/Ww pairing antiparallel cis XX |
|
B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B3-B17 : A-U Ww/Ww pairing antiparallel cis XX |
|
B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C4p_exo anti |
|
A9 : A C3p_endo anti |
|
A10 : U C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
B1 : G C3p_endo anti |
|
B2 : C C3p_endo anti |
|
B3 : A C3p_endo anti |
|
B4 : C C3p_endo anti |
|
B5 : C C3p_endo anti |
|
B6 : G C3p_endo anti |
|
B7 : A C4p_exo anti |
|
B8 : A C4p_exo anti |
|
B9 : C C3p_endo anti |
|
B10 : C C3p_endo anti |
|
B11 : A C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : C C3p_endo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : U C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : C C4p_exo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A15-A16 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B17-B18 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-A21 : outward |
|
A4-A19 : outward |
|
A7-A16 : outward |
|
A7-B7 : upward |
|
A8-B6 : downward |
|
A8-B14 : outward |
|
A11-B11 : outward |
|
A12-B10 : outward |
|
B6-B15 : outward |
|
Number of stackings = 32 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 9 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B12 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B11 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-B8 : U-A Ww/Ww pairing antiparallel cis XX |
|
A14-B7 : U-A Ww/Ww pairing antiparallel cis XX |
|
B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B3-B17 : A-U Ww/Ww pairing antiparallel cis XX |
|
B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C4p_exo anti |
|
A10 : U C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C3p_endo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
B1 : G C3p_endo anti |
|
B2 : C C4p_exo anti |
|
B3 : A C3p_endo anti |
|
B4 : C C3p_endo anti |
|
B5 : C C3p_endo anti |
|
B6 : G C3p_endo anti |
|
B7 : A C4p_exo anti |
|
B8 : A C4p_exo anti |
|
B9 : C C4p_exo anti |
|
B10 : C C4p_exo anti |
|
B11 : A C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : C C3p_endo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : U C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-A21 : outward |
|
A4-A19 : outward |
|
A5-A18 : outward |
|
A7-A16 : outward |
|
A7-B7 : upward |
|
A8-B6 : downward |
|
A11-B11 : outward |
|
A12-B10 : outward |
|
B3-B18 : outward |
|
B5-B16 : outward |
|
B6-B15 : outward |
|
Number of stackings = 32 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 11 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B12 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B11 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-B8 : U-A Ww/Ww pairing antiparallel cis XX |
|
A14-B7 : U-A Ww/Ww pairing antiparallel cis XX |
|
B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B3-B17 : A-U Ww/Ww pairing antiparallel cis XX |
|
B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C4p_exo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C4p_exo anti |
|
A9 : A C2p_exo anti |
|
A10 : U C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : U C3p_endo anti |
|
A15 : C C4p_exo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C4p_exo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
B1 : G C3p_endo anti |
|
B2 : C C3p_endo anti |
|
B3 : A C3p_endo anti |
|
B4 : C C3p_endo anti |
|
B5 : C C4p_exo anti |
|
B6 : G C3p_endo anti |
|
B7 : A C4p_exo anti |
|
B8 : A C4p_exo anti |
|
B9 : C C3p_endo anti |
|
B10 : C C3p_endo anti |
|
B11 : A C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : C C3p_endo anti |
|
B14 : C C4p_exo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : U C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A6-A7 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A18-A19 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B9-B10 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A18 : outward |
|
A7-A16 : outward |
|
A7-B7 : upward |
|
A8-B6 : downward |
|
A8-B14 : outward |
|
A11-B11 : outward |
|
B6-B15 : outward |
|
Number of stackings = 30 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 7 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B12 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B11 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-B8 : U-A Ww/Ww pairing antiparallel cis XX |
|
A14-B7 : U-A Ww/Ww pairing antiparallel cis XX |
|
B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B3-B17 : A-U Ww/Ww pairing antiparallel cis XX |
|
B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C3p_endo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C3p_endo anti |
|
A7 : G C3p_endo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : U C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C4p_exo anti |
|
A14 : U C4p_exo anti |
|
A15 : C C4p_exo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
B1 : G C3p_endo anti |
|
B2 : C C3p_endo anti |
|
B3 : A C3p_endo anti |
|
B4 : C C3p_endo anti |
|
B5 : C C4p_exo anti |
|
B6 : G C4p_exo anti |
|
B7 : A C4p_exo anti |
|
B8 : A C3p_endo anti |
|
B9 : C C3p_endo anti |
|
B10 : C C3p_endo anti |
|
B11 : A C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : C C2p_exo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : U C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
B1-B2 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
B18-B19 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A2-A21 : outward |
|
A4-A19 : outward |
|
A7-A16 : outward |
|
A8-B6 : downward |
|
A9-B13 : outward |
|
A11-B11 : outward |
|
B3-B18 : outward |
|
Number of stackings = 28 |
|
Number of adjacent stackings = 21 |
|
Number of non adjacent stackings = 7 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A7-B7 : G-A Bs/O2' pairing |
|
A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B7 : A-A O2P/Hh pairing |
|
A9-B12 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B11 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-B8 : U-A Ww/Ww pairing antiparallel cis XX |
|
A14-B7 : U-A Ww/Ww pairing antiparallel cis XX |
|
B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B3-B17 : A-U Ww/Ww pairing antiparallel cis XX |
|
B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
Residue conformations |
|
A1 : G C3p_endo anti |
|
A2 : G C3p_endo anti |
|
A3 : C C4p_exo anti |
|
A4 : A C3p_endo anti |
|
A5 : A C3p_endo anti |
|
A6 : C C4p_exo anti |
|
A7 : G C4p_exo anti |
|
A8 : G C3p_endo anti |
|
A9 : A C3p_endo anti |
|
A10 : U C3p_endo anti |
|
A11 : G C3p_endo anti |
|
A12 : G C3p_endo anti |
|
A13 : U C3p_endo anti |
|
A14 : U C4p_exo anti |
|
A15 : C C4p_exo anti |
|
A16 : G C3p_endo anti |
|
A17 : U C3p_endo anti |
|
A18 : U C3p_endo anti |
|
A19 : G C3p_endo anti |
|
A20 : C C3p_endo anti |
|
A21 : C C3p_endo anti |
|
B1 : G C3p_endo anti |
|
B2 : C C3p_endo anti |
|
B3 : A C3p_endo anti |
|
B4 : C C3p_endo anti |
|
B5 : C C3p_endo anti |
|
B6 : G C3p_endo anti |
|
B7 : A C4p_exo anti |
|
B8 : A C4p_exo anti |
|
B9 : C C3p_endo anti |
|
B10 : C C4p_exo anti |
|
B11 : A C3p_endo anti |
|
B12 : U C3p_endo anti |
|
B13 : C C3p_endo anti |
|
B14 : C C3p_endo anti |
|
B15 : G C3p_endo anti |
|
B16 : G C3p_endo anti |
|
B17 : U C3p_endo anti |
|
B18 : G C3p_endo anti |
|
B19 : C C3p_endo anti |
|
Adjacent stackings |
|
A1-A2 : adjacent_5p upward |
|
A2-A3 : adjacent_5p upward |
|
A3-A4 : adjacent_5p upward |
|
A4-A5 : adjacent_5p upward |
|
A5-A6 : adjacent_5p upward |
|
A8-A9 : adjacent_5p upward |
|
A9-A10 : adjacent_5p upward |
|
A10-A11 : adjacent_5p upward |
|
A11-A12 : adjacent_5p upward |
|
A12-A13 : adjacent_5p upward |
|
A14-A15 : adjacent_5p upward |
|
A16-A17 : adjacent_5p upward |
|
A19-A20 : adjacent_5p upward |
|
B2-B3 : adjacent_5p upward |
|
B3-B4 : adjacent_5p upward |
|
B5-B6 : adjacent_5p upward |
|
B7-B8 : adjacent_5p upward |
|
B8-B9 : adjacent_5p upward |
|
B10-B11 : adjacent_5p upward |
|
B11-B12 : adjacent_5p upward |
|
B14-B15 : adjacent_5p upward |
|
B15-B16 : adjacent_5p upward |
|
B16-B17 : adjacent_5p upward |
|
Non-Adjacent stackings |
|
A5-A18 : outward |
|
A7-A16 : outward |
|
A7-B7 : upward |
|
A8-B6 : downward |
|
A9-B13 : outward |
|
A12-B10 : outward |
|
B5-B16 : outward |
|
Number of stackings = 30 |
|
Number of adjacent stackings = 23 |
|
Number of non adjacent stackings = 7 |
|
Base-pairs |
|
A1-A21 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A2-A20 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A3-A19 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A4-A18 : A-U Ww/Ww pairing antiparallel cis XX |
|
A5-A17 : A-U Ww/Ww pairing antiparallel cis XX |
|
A6-A16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
A7-A15 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A8-B13 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A9-B12 : A-U Ww/Ww pairing antiparallel cis XX |
|
A10-B11 : U-A Ww/Ww pairing antiparallel cis XX |
|
A11-B10 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A12-B9 : G-C Ww/Ww pairing antiparallel cis XIX |
|
A13-B8 : U-A Ww/Ww pairing antiparallel cis XX |
|
A14-B7 : U-A Ww/Ww pairing antiparallel cis XX |
|
B1-B19 : G-C Ww/Ww pairing antiparallel cis XIX |
|
B2-B18 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B3-B17 : A-U Ww/Ww pairing antiparallel cis XX |
|
B4-B16 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B5-B15 : C-G Ww/Ww pairing antiparallel cis XIX |
|
B6-B14 : G-C Ww/Ww pairing antiparallel cis XIX |
|
|
