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124d_MC
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| 1 |
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Residue conformations -------------------------------------------
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A1 : G C1p_exo anti
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A2 : T O4p_endo anti
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A3 : C O4p_endo anti
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A4 : A C1p_exo anti
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A5 : C O4p_endo anti
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A6 : A C1p_exo anti
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A7 : T C1p_exo anti
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A8 : G O4p_endo anti
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B9 : C C3p_endo anti
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B10 : A C3p_endo anti
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B11 : U C3p_endo anti
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B12 : G C3p_endo anti
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B13 : U C2p_exo anti
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B14 : G C3p_endo anti
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B15 : A C3p_endo anti
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B16 : C C3p_endo anti
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Adjacent stackings ----------------------------------------------
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A1-A2 : adjacent_5p upward
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A2-A3 : adjacent_5p upward
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A4-A5 : adjacent_5p upward
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A5-A6 : adjacent_5p upward
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A6-A7 : adjacent_5p upward
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A7-A8 : adjacent_5p upward
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B9-B10 : adjacent_5p upward
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B10-B11 : adjacent_5p upward
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B12-B13 : adjacent_5p upward
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B14-B15 : adjacent_5p upward
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B15-B16 : adjacent_5p upward
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Non-Adjacent stackings ------------------------------------------
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A4-B14 : outward
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A6-B12 : outward
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A8-B10 : outward
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Number of stackings = 14
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Number of adjacent stackings = 11
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Number of non adjacent stackings = 3
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Base-pairs ------------------------------------------------------
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A1-B16 : G-C Ww/Ww pairing antiparallel cis XIX
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A2-B15 : T-A Ww/Ww pairing antiparallel cis
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A3-B14 : C-G Ww/Ww pairing antiparallel cis XIX
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A4-B13 : A-U Ww/Ww pairing antiparallel cis XX
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A5-B12 : C-G Ww/Ww pairing antiparallel cis XIX
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A6-B11 : A-U Ww/Ww pairing antiparallel cis XX
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A7-B10 : T-A Ww/Ww pairing antiparallel cis
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A8-B9 : G-C Ww/Ww pairing antiparallel cis XIX
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