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1atw_MC ADDED
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+ Residue conformations -------------------------------------------
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+ A1 : G C3p_endo anti
3
+ A2 : C C3p_endo anti
4
+ A3 : U C3p_endo anti
5
+ A4 : C C3p_endo anti
6
+ A5 : C C3p_endo anti
7
+ A6 : A C4p_exo anti
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+ A7 : G C3p_exo anti
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+ A8 : A C3p_endo anti
10
+ A9 : U C3p_endo anti
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+ A10 : G C3p_endo anti
12
+ A11 : G C3p_endo anti
13
+ A12 : A C3p_endo anti
14
+ A13 : G C3p_endo anti
15
+ A14 : C C3p_endo anti
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+ A15 : G C4p_exo anti
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+ Adjacent stackings ----------------------------------------------
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+ A1-A2 : adjacent_5p upward
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+ A2-A3 : adjacent_5p upward
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+ A3-A4 : adjacent_5p upward
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+ A4-A5 : adjacent_5p upward
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+ A8-A9 : adjacent_5p upward
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+ A10-A11 : adjacent_5p upward
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+ A11-A12 : adjacent_5p upward
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+ A12-A13 : adjacent_5p upward
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+ A13-A14 : adjacent_5p upward
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+ Non-Adjacent stackings ------------------------------------------
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+ A1-A15 : outward
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+ Number of stackings = 10
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+ Number of adjacent stackings = 9
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+ Number of non adjacent stackings = 1
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+ Base-pairs ------------------------------------------------------
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+ A1-A14 : G-C Ww/Ww pairing antiparallel cis XIX
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+ A2-A13 : C-G Ww/Ww pairing antiparallel cis XIX
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+ A3-A12 : U-A Ww/Ww pairing antiparallel cis XX
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+ A4-A11 : C-G Ww/Ww pairing antiparallel cis XIX
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+ A5-A6 : C-A O2P/Ss O2P/C8 adjacent_5p pairing
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+ A5-A10 : C-G Ww/Ww pairing antiparallel cis XIX
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+ Residue conformations -------------------------------------------
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+ A1 : G C3p_endo anti
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+ A2 : C C3p_endo anti
42
+ A3 : U C3p_endo anti
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+ A4 : C C3p_endo anti
44
+ A5 : C C3p_endo anti
45
+ A6 : A C3p_endo anti
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+ A7 : G C2p_endo anti
47
+ A8 : A C3p_endo anti
48
+ A9 : U C3p_endo anti
49
+ A10 : G C3p_endo anti
50
+ A11 : G C3p_endo anti
51
+ A12 : A C3p_endo anti
52
+ A13 : G C3p_endo anti
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+ A14 : C C3p_endo anti
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+ A15 : G C3p_endo anti
55
+ Adjacent stackings ----------------------------------------------
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+ A1-A2 : adjacent_5p upward
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+ A3-A4 : adjacent_5p upward
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+ A4-A5 : adjacent_5p upward
59
+ A8-A9 : adjacent_5p upward
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+ A10-A11 : adjacent_5p upward
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+ A11-A12 : adjacent_5p upward
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+ A12-A13 : adjacent_5p upward
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+ A13-A14 : adjacent_5p upward
64
+ Non-Adjacent stackings ------------------------------------------
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+ Number of stackings = 8
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+ Number of adjacent stackings = 8
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+ Number of non adjacent stackings = 0
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+ Base-pairs ------------------------------------------------------
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+ A1-A14 : G-C Ww/Ww pairing antiparallel cis XIX
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+ A1-A15 : G-G O2'/Bs pairing
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+ A2-A13 : C-G Ww/Ww pairing antiparallel cis XIX
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+ A3-A12 : U-A Ww/Ww pairing antiparallel cis XX
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+ A4-A11 : C-G Ww/Ww pairing antiparallel cis XIX
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+ A5-A10 : C-G Ww/Ww pairing antiparallel cis XIX
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+ A7-A10 : G-G Sw/Ss O2'/Bs Bs/O2' pairing parallel cis one_hbond
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+ Residue conformations -------------------------------------------
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+ A1 : G C4p_exo anti
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+ A2 : C C3p_endo anti
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+ A3 : U C3p_endo anti
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+ A4 : C C3p_endo anti
81
+ A5 : C C3p_endo anti
82
+ A6 : A C3p_endo anti
83
+ A7 : G C2p_endo anti
84
+ A8 : A C3p_endo anti
85
+ A9 : U C3p_endo anti
86
+ A10 : G C3p_endo anti
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+ A11 : G C3p_endo anti
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+ A12 : A C3p_endo anti
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+ A13 : G C3p_endo anti
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+ A14 : C C3p_endo anti
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+ A15 : G C4p_exo anti
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+ Adjacent stackings ----------------------------------------------
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+ A1-A2 : adjacent_5p upward
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+ A2-A3 : adjacent_5p upward
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+ A3-A4 : adjacent_5p upward
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+ A4-A5 : adjacent_5p upward
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+ A8-A9 : adjacent_5p upward
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+ A10-A11 : adjacent_5p upward
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+ A11-A12 : adjacent_5p upward
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+ A12-A13 : adjacent_5p upward
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+ A13-A14 : adjacent_5p upward
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+ Non-Adjacent stackings ------------------------------------------
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+ Number of stackings = 9
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+ Number of adjacent stackings = 9
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+ Number of non adjacent stackings = 0
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+ Base-pairs ------------------------------------------------------
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+ A1-A14 : G-C Ww/Ww pairing antiparallel cis XIX
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+ A1-A15 : G-G Bs/Hh pairing antiparallel trans 34
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+ A2-A13 : C-G Ww/Ww pairing antiparallel cis XIX
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+ A3-A12 : U-A Ww/Ww pairing antiparallel cis XX
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+ A4-A11 : C-G Ww/Ww pairing antiparallel cis XIX
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+ A5-A6 : C-A O2P/Hh O2P/Ss adjacent_5p pairing
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+ A5-A10 : C-G Ww/Ww pairing antiparallel cis XIX
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+ A9-A10 : U-G O2P/Hh adjacent_5p pairing