CUDA kernels incompatible with standard PyTorch device movement with 4bit/8bit, necessitating device-specific handling (#416) b6d28c3 verified ctheodoris madhavanvenkatesh commited on Sep 10
remove token dictionary and unpickling from init (#403) 7eca269 verified ctheodoris madhavanvenkatesh commited on Sep 3
update tokenizer to defaults for 95M models for special token and input size da8cf3d verified ctheodoris commited on Sep 2
pointing dictionaries from the mtl module's init (#397) 7470753 verified ctheodoris madhavanvenkatesh commited on Aug 28
Refactored token dictionary loading and encapsulated dictionary (#398) beb62a4 verified ctheodoris madhavanvenkatesh commited on Aug 28
Refactor: Convert mask_token_id, pad_token_id, and all_special_ids to properties (#395) 2e06f1a verified ctheodoris madhavanvenkatesh commited on Aug 28
allow model_type valid options to take params model_type : {"Pretrained", "GeneClassifier", "CellClassifier", "MTLCellClassifier", "MTLCellClassifier-Quantized"} (#390) 47e0ef8 verified ctheodoris madhavanvenkatesh commited on Aug 21
"save_model_without_heads" is redundant (#385) de10ab0 verified ctheodoris madhavanvenkatesh commited on Aug 21
comment out "def save_model_without_heads(original_model_save_directory)"; redundant for ISP/Emb extractor (#382) 22bf20f verified ctheodoris madhavanvenkatesh commited on Aug 21
fixed bug related to dynamic ranges in dictionary with 'min' and 'max' value mismatch in optuna suggest fn (#380) fe1640b verified ctheodoris madhavanvenkatesh commited on Aug 21
update with 12L and 20L i4096 gc95M models, multitask and quantiz code 933ca80 ctheodoris commited on Aug 15
update to only have gene names as keys in gene_name_id_dict e61485e verified ctheodoris commited on Aug 11
Add function for summing of Ensembl IDs (#377) 1e18102 verified ctheodoris hchen725 commited on Aug 11
Add function to get number of model embeddings (#364) c90d791 verified ctheodoris hchen725 commited on Jul 9
update perturber stats to reflect cos sim and emb_extractor to suppress warnings for non-cls 25dd1da ctheodoris commited on Jul 7
update to account for set of perturbed genes with aggregate_data eb038a6 ctheodoris commited on Jul 2
Update with gene classifier, custom token dict, and str validate options (#329) 0568479 verified ctheodoris hchen725 commited on Apr 8
update examples for predict_eval and handle roc for 2 cell classes eeba323 Christina Theodoris commited on Mar 4