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ctheodoris
/
Geneformer
like
206
Fill-Mask
Transformers
Safetensors
ctheodoris/Genecorpus-30M
bert
single-cell
genomics
Inference Endpoints
License:
apache-2.0
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5488d17
Geneformer
/
examples
15 contributors
History:
27 commits
ctheodoris
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (
#146
)
9169bfd
over 1 year ago
pretraining_new_model
Update links including unsorted example lengths file
over 1 year ago
cell_classification.ipynb
Safe
96.1 kB
Add note to recommend tuning hyperparameters for downstream applications
over 1 year ago
extract_and_plot_cell_embeddings.ipynb
Safe
1.13 MB
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)
over 1 year ago
gene_classification.ipynb
Safe
168 kB
Add note to recommend tuning hyperparameters for downstream applications
over 1 year ago
hyperparam_optimiz_for_disease_classifier.py
Safe
6.78 kB
Change list of individual IDs to set to ensure unique before subsetting into train/valid/test sets
over 1 year ago
in_silico_perturbation.ipynb
Safe
3.65 kB
Fixed error with perturbing individual genes and updated ways to specify cell_states_to_model (#146)
over 1 year ago
tokenizing_scRNAseq_data.ipynb
Safe
3.25 kB
Add instructions to convert gene annotations w/ Ensembl Biomart
over 1 year ago