OpenMS
OpenMS is an open-source project for data analysis and processing in protein mass spectrometry and is released under the 3-clause BSD licence. It supports most common operating systems including Microsoft Windows, OS X and Linux.

OpenMS has tools for many common data analysis pipelines used in proteomics, providing algorithms for signal processing, feature finding (including de-isotoping), visualization in 1D (spectra or chromatogram level), 2D and 3D, map mapping and peptide identification. It supports label-free and isotopic-label based quantification (such as iTRAQ and TMT and SILAC). Furthermore, it also supports metabolomics workflows and targeted analysis of DIA/SWATH data.

To achieve a wide variety of tasks in proteomics, OpenMS provides The OpenMS Proteomics Pipeline (TOPP) which is a set of computational tools that can be chained together to tailor problem-specific analysis pipelines for HPLC-MS data. It transforms most of the OpenMS functionality into small command line tools that are the building blocks for more complex analysis pipelines.
Q7251488
protein mass spectrometry
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Q191307
3-clause BSD licence
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Q1406
Microsoft Windows
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Q14116
OS X
MISC
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Linux
MISC
Q7251488
proteomics
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Q6466869
label-free
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Q1480828
iTRAQ
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Q7682439
TMT
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Q3943646
SILAC
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Q12149006
metabolomics
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Q25106471
DIA/SWATH
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Q7755167
The OpenMS Proteomics Pipeline (TOPP)
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Q7095827
OpenMS
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Q7095827
OpenMS
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Q7095827
OpenMS
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Q7095827
OpenMS
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Q7095827
OpenMS
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