@inproceedings{wunnava-etal-2024-development,
    title = "Development of a Benchmark Corpus for Medical Device Adverse Event Detection",
    author = "Wunnava, Susmitha  and
      Harris, David A.  and
      Bourgeois, Florence T.  and
      Miller, Timothy A.",
    editor = "Demner-Fushman, Dina  and
      Ananiadou, Sophia  and
      Thompson, Paul  and
      Ondov, Brian",
    booktitle = "Proceedings of the First Workshop on Patient-Oriented Language Processing (CL4Health) @ LREC-COLING 2024",
    month = may,
    year = "2024",
    address = "Torino, Italia",
    publisher = "ELRA and ICCL",
    url = "https://aclanthology.org/2024.cl4health-1.29",
    pages = "240--245",
    abstract = "The U.S. Food and Drug Administration (FDA) collects real-world adverse events, including device-associated deaths, injuries, and malfunctions, through passive reporting to the agency{'}s Manufacturer and User Facility Device Experience (MAUDE) database. However, this system{'}s full potential remains untapped given the extensive use of unstructured text in medical device adverse event reports and lack of FDA resources and expertise to properly analyze all available data. In this work, we focus on addressing this limitation through the development of an annotated benchmark corpus to support the design and development of state-of-the-art NLP approaches towards automatic extraction of device-related adverse event information from FDA Medical Device Adverse Event Reports. We develop a dataset of labeled medical device reports from a diverse set of high-risk device types, that can be used for supervised machine learning. We develop annotation guidelines and manually annotate for nine entity types. The resulting dataset contains 935 annotated adverse event reports, containing 12252 annotated spans across the nine entity types. The dataset developed in this work will be made publicly available upon publication.",
}

The U.S. Food and Drug Administration (FDA) collects real-world adverse events, including device-associated deaths, injuries, and malfunctions, through passive reporting to the agency{'}s Manufacturer and User Facility Device Experience (MAUDE) database. However, this system{'}s full potential remains untapped given the extensive use of unstructured text in medical device adverse event reports and lack of FDA resources and expertise to properly analyze all available data. In this work, we focus on addressing this limitation through the development of an annotated benchmark corpus to support the design and development of state-of-the-art NLP approaches towards automatic extraction of device-related adverse event information from FDA Medical Device Adverse Event Reports. We develop a dataset of labeled medical device reports from a diverse set of high-risk device types, that can be used for supervised machine learning. We develop annotation guidelines and manually annotate for nine entity types. The resulting dataset contains 935 annotated adverse event reports, containing 12252 annotated spans across the nine entity types. The dataset developed in this work will be made publicly available upon publication.
Wunnava, Susmitha Harris, David A. Bourgeois, Florence T. Miller, Timothy A.
Development of a Benchmark Corpus for Medical Device Adverse Event Detection