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  - split: test
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  path: data/test-*
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  ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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  - split: test
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  path: data/test-*
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  ---
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+ # Dataset Card for BioRel
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+
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+ ## Dataset Description
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+
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+ - **Repository:** https://drive.google.com/drive/folders/1vw2zIxdSoqT2QALDbRVG6loLsgi2doBG
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+ - **Paper:** [BioRel: towards large-scale biomedical relation extraction](https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-020-03889-5)
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+
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+ #### Dataset Summary
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+
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+ <!-- Provide a quick summary of the dataset. -->
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+ **BioRel Dataset Summary:**
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+
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+ BioRel is a comprehensive dataset designed for biomedical relation extraction, leveraging the vast amount of electronic biomedical literature available.
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+ Developed using the Unified Medical Language System (UMLS) as a knowledge base and Medline articles as a corpus, BioRel utilizes Metamap for entity identification and linking, and employs distant supervision for relation labeling.
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+ The training set comprises 534,406 sentences, the validation set includes 218,669 sentences, and the testing set contains 114,515 sentences.
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+ This dataset supports both deep learning and statistical machine learning methods, providing a robust resource for training and evaluating biomedical relation extraction models.
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+ The original dataset is available here: https://drive.google.com/drive/folders/1vw2zIxdSoqT2QALDbRVG6loLsgi2doBG
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+
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+ We converted the dataset to the OpenNRE format using the following script: https://github.com/GDAMining/gda-extraction/blob/main/convert2opennre/convert_biorel2opennre.py
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+
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+ ### Languages
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+
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+ The language in the dataset is English.
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+
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+
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+ ## Dataset Structure
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+
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+ <!-- This section provides a description of the dataset fields, and additional information about the dataset structure such as criteria used to create the splits, relationships between data points, etc. -->
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+
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+ ### Dataset Instances
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+
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+ An example of 'train' looks as follows:
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+ ```json
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+ {
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+ "text": "algal polysaccharide obtained from carrageenin protects 80 to 100 percent of chicken embryos against fatal infections with the lee strain of influenza virus .",
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+ "relation": "NA",
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+ "h": {
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+ "id": "C0032594",
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+ "name": "polysaccharide",
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+ "pos": [6, 20]
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+ },
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+ "t": {
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+ "id": "C0007289",
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+ "name": "carrageenin",
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+ "pos": [35, 46]
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+ }
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+ }
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+ ```
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+
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+ ### Data Fields
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+
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+ - `text`: the text of this example, a `string` feature.
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+ - `h`: head entity
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+ - `id`: identifier of the head entity, a `string` feature.
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+ - `pos`: character offsets of the head entity, a list of `int32` features.
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+ - `name`: head entity text, a `string` feature.
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+ - `t`: tail entity
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+ - `id`: identifier of the tail entity, a `string` feature.
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+ - `pos`: character offsets of the tail entity, a list of `int32` features.
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+ - `name`: tail entity text, a `string` feature.
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+ - `relation`: a class label.
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+
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+
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+ ## Citation
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+
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+ <!-- If there is a paper or blog post introducing the dataset, the APA and Bibtex information for that should go in this section. -->
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+
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+ **BibTeX:**
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+
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+ ```
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+ @article{xing2020biorel,
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+ title={BioRel: towards large-scale biomedical relation extraction},
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+ author={Xing, Rui and Luo, Jie and Song, Tengwei},
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+ journal={BMC bioinformatics},
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+ volume={21},
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+ pages={1--13},
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+ year={2020},
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+ publisher={Springer}
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+ }
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+ ```
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+
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+ **APA:**
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+
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+ - Xing, R., Luo, J., & Song, T. (2020). BioRel: towards large-scale biomedical relation extraction. BMC bioinformatics, 21, 1-13.
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+
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+ ## Dataset Card Authors
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+
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+ [@phucdev](https://github.com/phucdev)