dream-coder / dreamcoder /compression.py
Fraser-Greenlee
add dataset code
3bdb76c
import datetime
import json
import os
import pickle
import subprocess
import sys
from dreamcoder.fragmentGrammar import FragmentGrammar
from dreamcoder.frontier import Frontier, FrontierEntry
from dreamcoder.grammar import Grammar
from dreamcoder.task import Task
from dreamcoder.program import Program, Invented
from dreamcoder.utilities import eprint, timing, callCompiled, get_root_dir
from dreamcoder.vs import induceGrammar_Beta
def induceGrammar(*args, **kwargs):
if sum(not f.empty for f in args[1]) == 0:
eprint("No nonempty frontiers, exiting grammar induction early.")
return args[0], args[1]
backend = kwargs.pop("backend", "pypy")
if 'pypy' in backend:
# pypy might not like some of the imports needed for the primitives
# but the primitive values are irrelevant for compression
# therefore strip them out and then replace them once we are done
# ditto for task data
g0,frontiers = args[0].strip_primitive_values(), \
[front.strip_primitive_values() for front in args[1]]
original_tasks = {f.task.name: f.task for f in frontiers}
frontiers = [Frontier(f.entries, Task(f.task.name,f.task.request,[]))
for f in frontiers ]
args = [g0,frontiers]
with timing("Induced a grammar"):
if backend == "pypy":
g, newFrontiers = callCompiled(pypyInduce, *args, **kwargs)
elif backend == "rust":
g, newFrontiers = rustInduce(*args, **kwargs)
elif backend == "vs":
g, newFrontiers = rustInduce(*args, vs=True, **kwargs)
elif backend == "pypy_vs":
kwargs.pop('iteration')
kwargs.pop('topk_use_only_likelihood')
fn = '/tmp/vs.pickle'
with open(fn, 'wb') as handle:
pickle.dump((args, kwargs), handle)
eprint("For debugging purposes, the version space compression invocation has been saved to", fn)
g, newFrontiers = callCompiled(induceGrammar_Beta, *args, **kwargs)
elif backend == "ocaml":
kwargs.pop('iteration')
kwargs.pop('topk_use_only_likelihood')
kwargs['topI'] = 300
kwargs['bs'] = 1000000
g, newFrontiers = ocamlInduce(*args, **kwargs)
elif backend == "memorize":
g, newFrontiers = memorizeInduce(*args, **kwargs)
else:
assert False, "unknown compressor"
if 'pypy' in backend:
g, newFrontiers = g.unstrip_primitive_values(), \
[front.unstrip_primitive_values() for front in newFrontiers]
newFrontiers = [Frontier(f.entries, original_tasks[f.task.name])
for f in newFrontiers]
return g, newFrontiers
def memorizeInduce(g, frontiers, **kwargs):
existingInventions = {p.uncurry()
for p in g.primitives }
programs = {f.bestPosterior.program for f in frontiers if not f.empty}
newInventions = programs - existingInventions
newGrammar = Grammar.uniform([p for p in g.primitives] + \
[Invented(ni) for ni in newInventions])
# rewrite in terms of new primitives
def substitute(p):
nonlocal newInventions
if p in newInventions: return Invented(p).uncurry()
return p
newFrontiers = [Frontier([FrontierEntry(program=np,
logPrior=newGrammar.logLikelihood(f.task.request, np),
logLikelihood=e.logLikelihood)
for e in f
for np in [substitute(e.program)] ],
task=f.task)
for f in frontiers ]
return newGrammar, newFrontiers
def pypyInduce(*args, **kwargs):
kwargs.pop('iteration')
return FragmentGrammar.induceFromFrontiers(*args, **kwargs)
def ocamlInduce(g, frontiers, _=None,
topK=1, pseudoCounts=1.0, aic=1.0,
structurePenalty=0.001, a=0, CPUs=1,
bs=1000000, topI=300):
# This is a dirty hack!
# Memory consumption increases with the number of CPUs
# And early on we have a lot of stuff to compress
# If this is the first iteration, only use a fraction of the available CPUs
if all(not p.isInvented for p in g.primitives):
if a > 3:
CPUs = max(1, int(CPUs / 6))
else:
CPUs = max(1, int(CPUs / 3))
else:
CPUs = max(1, int(CPUs / 2))
CPUs = 2
# X X X FIXME X X X
# for unknown reasons doing compression all in one go works correctly and doing it with Python and the outer loop causes problems
iterations = 99 # maximum number of components to add at once
while True:
g0 = g
originalFrontiers = frontiers
t2f = {f.task: f for f in frontiers}
frontiers = [f for f in frontiers if not f.empty]
message = {"arity": a,
"topK": topK,
"pseudoCounts": float(pseudoCounts),
"aic": aic,
"bs": bs,
"topI": topI,
"structurePenalty": float(structurePenalty),
"CPUs": CPUs,
"DSL": g.json(),
"iterations": iterations,
"frontiers": [f.json()
for f in frontiers]}
message = json.dumps(message)
if True:
timestamp = datetime.datetime.now().isoformat()
os.system("mkdir -p compressionMessages")
fn = "compressionMessages/%s" % timestamp
with open(fn, "w") as f:
f.write(message)
eprint("Compression message saved to:", fn)
try:
# Get relative path
compressor_file = os.path.join(get_root_dir(), 'compression')
process = subprocess.Popen(compressor_file,
stdin=subprocess.PIPE,
stdout=subprocess.PIPE)
response, error = process.communicate(bytes(message, encoding="utf-8"))
response = json.loads(response.decode("utf-8"))
except OSError as exc:
raise exc
g = response["DSL"]
g = Grammar(g["logVariable"],
[(l, p.infer(), p)
for production in g["productions"]
for l in [production["logProbability"]]
for p in [Program.parse(production["expression"])]],
continuationType=g0.continuationType)
frontiers = {original.task:
Frontier([FrontierEntry(p,
logLikelihood=e["logLikelihood"],
logPrior=g.logLikelihood(original.task.request, p))
for e in new["programs"]
for p in [Program.parse(e["program"])]],
task=original.task)
for original, new in zip(frontiers, response["frontiers"])}
frontiers = [frontiers.get(f.task, t2f[f.task])
for f in originalFrontiers]
if iterations == 1 and len(g) > len(g0):
eprint("Grammar changed - running another round of consolidation.")
continue
else:
eprint("Finished consolidation.")
return g, frontiers
def rustInduce(g0, frontiers, _=None,
topK=1, pseudoCounts=1.0, aic=1.0,
structurePenalty=0.001, a=0, CPUs=1, iteration=-1,
topk_use_only_likelihood=False,
vs=False):
def finite_logp(l):
return l if l != float("-inf") else -1000
message = {
"strategy": {"version-spaces": {"top_i": 50}}
if vs else
{"fragment-grammars": {}},
"params": {
"structure_penalty": structurePenalty,
"pseudocounts": int(pseudoCounts + 0.5),
"topk": topK,
"topk_use_only_likelihood": topk_use_only_likelihood,
"aic": aic if aic != float("inf") else None,
"arity": a,
},
"primitives": [{"name": p.name, "tp": str(t), "logp": finite_logp(l)}
for l, t, p in g0.productions if p.isPrimitive],
"inventions": [{"expression": str(p.body),
"logp": finite_logp(l)} # -inf=-100
for l, t, p in g0.productions if p.isInvented],
"variable_logprob": finite_logp(g0.logVariable),
"frontiers": [{
"task_tp": str(f.task.request),
"solutions": [{
"expression": str(e.program),
"logprior": finite_logp(e.logPrior),
"loglikelihood": e.logLikelihood,
} for e in f],
} for f in frontiers],
}
eprint("running rust compressor")
messageJson = json.dumps(message)
with open("jsonDebug", "w") as f:
f.write(messageJson)
# check which version of python we are using
# if >=3.6 do:
if sys.version_info[1] >= 6:
p = subprocess.Popen(
['./rust_compressor/rust_compressor'],
encoding='utf-8',
stdin=subprocess.PIPE,
stdout=subprocess.PIPE)
elif sys.version_info[1] == 5:
p = subprocess.Popen(
['./rust_compressor/rust_compressor'],
stdin=subprocess.PIPE,
stdout=subprocess.PIPE)
messageJson = bytearray(messageJson, encoding='utf-8')
# convert messageJson string to bytes
else:
eprint("must be python 3.5 or 3.6")
assert False
p.stdin.write(messageJson)
p.stdin.flush()
p.stdin.close()
if p.returncode is not None:
raise ValueError("rust compressor failed")
if sys.version_info[1] >= 6:
resp = json.load(p.stdout)
elif sys.version_info[1] == 5:
import codecs
resp = json.load(codecs.getreader('utf-8')(p.stdout))
productions = [(x["logp"], p) for p, x in
zip((p for (_, _, p) in g0.productions if p.isPrimitive), resp["primitives"])] + \
[(i["logp"], Invented(Program.parse(i["expression"])))
for i in resp["inventions"]]
productions = [(l if l is not None else float("-inf"), p)
for l, p in productions]
g = Grammar.fromProductions(productions, resp["variable_logprob"], continuationType=g0.continuationType)
newFrontiers = [
Frontier(
[
FrontierEntry(
Program.parse(
s["expression"]),
logPrior=s["logprior"],
logLikelihood=s["loglikelihood"]) for s in r["solutions"]],
f.task) for f,
r in zip(
frontiers,
resp["frontiers"])]
return g, newFrontiers