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An open-source application for biological image analysis
Community-contributed and experimental CellProfiler modules.
Everything needed to build CellProfiler for your favorite environment.
CellProfiler tutorial pipelines and images
Read and write life sciences file formats
CellProfiler’s Java dependencies
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
An open source image processing library
Jupyter notebooks for CellProfiler and friends
A place to propose new features for CellProfiler
Example CellProfiler pipelines.
OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.
Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.org
ZMQ connection between CellProfiler and Knime
Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute