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README.md
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## In Silico Saturation Mutagensis
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### File structure for: Mesculenta_305_v6_PROseq_ISM_LOG2FC.txt.gz
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Intergenic enhancer regions based on Lozano et al. 2021 (https://pubmed.ncbi.nlm.nih.gov/34499719/) <br>
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Genome version: Manihot esculenta reference genome v6.1 from Phytozome <br>
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CHR: Chromosome <br>
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ALT: Alternative allele <br>
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LOG2FC: Log fold change in Intergenic enhancer probability (log2(p_mutated_sequence / p_original_sequence)) <br>
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### File structure for: Mesculenta_v6_GeneExpression_ISM_LOG2FC.txt.gz
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Gene expression prediction based on: Wilson et al. 2016 (https://pubmed.ncbi.nlm.nih.gov/28116755/) <br>
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Genome version: Manihot esculenta reference genome v6 from Ensembl 56 <br>
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CHR: Chromosome <br>
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## In Silico Saturation Mutagensis
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### File structure for: ISM_Tables/Mesculenta_305_v6_PROseq_ISM_LOG2FC.txt.gz
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Intergenic enhancer regions based on Lozano et al. 2021 (https://pubmed.ncbi.nlm.nih.gov/34499719/) <br>
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Genome version: Manihot esculenta reference genome v6.1 from Phytozome <br>
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CHR: Chromosome <br>
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ALT: Alternative allele <br>
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LOG2FC: Log fold change in Intergenic enhancer probability (log2(p_mutated_sequence / p_original_sequence)) <br>
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### File structure for: ISM_Tables/Mesculenta_v6_GeneExpression_ISM_LOG2FC.txt.gz
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Gene expression prediction based on: Wilson et al. 2016 (https://pubmed.ncbi.nlm.nih.gov/28116755/) <br>
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Genome version: Manihot esculenta reference genome v6 from Ensembl 56 <br>
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CHR: Chromosome <br>
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