public String polymerToHELM2 ( ) { StringBuilder notation = new StringBuilder ( ) ; for ( int i = 0 ; i < listOfPolymers . size ( ) ; i ++ ) { if ( listOfPolymers . get ( i ) . isAnnotationHere ( ) ) { notation . append ( listOfPolymers . get ( i ) . getPolymerID ( ) + "{" + listOfPolymers . get ( i ) . toHELM2 ( ) + "}\"" + listOfPolymers . get ( i ) . getAnnotation ( ) + "\"|" ) ; } else { notation . append ( listOfPolymers . get ( i ) . getPolymerID ( ) + "{" + listOfPolymers . get ( i ) . toHELM2 ( ) + "}" + "|" ) ; } } notation . setLength ( notation . length ( ) - 1 ) ; return notation . toString ( ) ; }
method to generate a valid HELM2 string for the first section