Collection < IndexedIndividual > getToAdd ( ) { if ( taxonomy_ == null ) { // No individual can be pruned. return toAdd_ ; } // else final int size = pruneToAdd ( ) ; /* * since getting the size of the queue is a linear operation, use the * computed size */ return Operations . getCollection ( toAdd_ , size ) ; }
Returns collection that contains at least all individuals that are in ontology but either are removed from taxonomy or their type nodes in taxonomy were removed .