public static LinkedHashMap < String , ProteinSequence > readGenbankProteinSequence ( File file ) throws Exception { FileInputStream inStream = new FileInputStream ( file ) ; LinkedHashMap < String , ProteinSequence > proteinSequences = readGenbankProteinSequence ( inStream ) ; inStream . close ( ) ; return proteinSequences ; }
Read a Genbank file containing amino acids with setup that would handle most cases .