public static int getSymmetryOrder ( AFPChain afpChain , int maxSymmetry , float minimumMetricChange ) throws StructureException { // alignment comes from the afpChain alignment Map < Integer , Integer > alignment = AlignmentTools . alignmentAsMap ( afpChain ) ; // Now construct identity to map aligned residues in sequential order Map < Integer , Integer > identity = guessSequentialAlignment ( alignment , true ) ; return AlignmentTools . getSymmetryOrder ( alignment , identity , maxSymmetry , minimumMetricChange ) ; }
Guesses the order of symmetry in an alignment