public static < S extends Sequence < S > > Alignment < S > shiftIndelsAtHomopolymers ( Alignment < S > alignment ) { return new Alignment <> ( alignment . sequence1 , MutationsUtil . shiftIndelsAtHomopolymers ( alignment . sequence1 , alignment . sequence1Range . getFrom ( ) , alignment . mutations ) , alignment . sequence1Range , alignment . sequence2Range , alignment . score ) ; }
Shifts indels to the left at homopolymer regions