private void pdb_JRNL_Handler ( String line ) { //add the strings to the journalLines //the actual JournalArticle is then built when the whole entry is being //finalized with triggerEndFileChecks() //JRNL TITL NMR SOLUTION STRUCTURE OF RECOMBINANT TICK 1TAP 10 if ( line . substring ( line . length ( ) - 8 , line . length ( ) - 4 ) . equals ( pdbId ) ) { //trim off the trailing PDB id from legacy files. //are we really trying to still cater for these museum pieces? logger . debug ( "trimming legacy PDB id from end of JRNL section line" ) ; line = line . substring ( 0 , line . length ( ) - 8 ) ; journalLines . add ( line ) ; } else { journalLines . add ( line ) ; } }
JRNL handler . The JRNL record contains the primary literature citation that describes the experiment which resulted in the deposited coordinate set . There is at most one JRNL reference per entry . If there is no primary reference then there is no JRNL reference . Other references are given in REMARK 1 .