public static LinkedHashMap < String , RNASequence > readFastaRNASequence ( InputStream inStream ) throws IOException { FastaReader < RNASequence , NucleotideCompound > fastaReader = new FastaReader < RNASequence , NucleotideCompound > ( inStream , new GenericFastaHeaderParser < RNASequence , NucleotideCompound > ( ) , new RNASequenceCreator ( RNACompoundSet . getRNACompoundSet ( ) ) ) ; return fastaReader . process ( ) ; }
Read a fasta RNA sequence