protected Collection < BioPAXElement > generate ( Interaction inter , Set < Entity > taboo ) { Set < BioPAXElement > simples = new HashSet < BioPAXElement > ( ) ; for ( Entity part : inter . getParticipant ( ) ) { if ( part instanceof PhysicalEntity && ! taboo . contains ( part ) ) { simples . addAll ( linker . getLinkedElements ( ( PhysicalEntity ) part ) ) ; } } return pe2ER . getValueFromBeans ( simples ) ; }
Gets the related entity references of the given interaction .