pattern_name: malformedAnatomicalEntityByType
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/malformedAnatomicalEntityByType.yaml
description: A malformed subtype of an anatomical entity, such as a wholly dorsalized embryo. This pattern can use any subclass of PATO malformed.

contributors:
- https://orcid.org/0000-0001-5208-3432
- https://orcid.org/0000-0002-3528-5267
classes:
  malformed: PATO:0000646
  abnormal: PATO:0000460
  anatomical entity: UBERON:0001062

relations:
  inheres_in: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

vars:
  malformed: "'malformed'"
  anatomical_entity: "'anatomical entity'"

name:
  text: "%s %s"
  vars:
  - malformed
  - anatomical_entity

def:
  text: "A %s %s."
  vars:
  - malformed
  - anatomical_entity

equivalentTo:
  text: "'has_part' some (%s and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))"
  vars:
  - malformed
  - anatomical_entity
