---
pattern_name: herniatedAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/herniatedAnatomicalEntity.yaml

description: 'Use this phenotype pattern when an anatomical entity pushes
  through a layer which surrounds or encloses it.'

#  examples:
#    - http://purl.obolibrary.org/obo/HP_0001539  # Omphalocele
#    - http://purl.obolibrary.org/obo/HP_0004299  # Hernia of the abdominal wall
#    - http://purl.obolibrary.org/obo/MP_0000757  # herniated abdominal wall
#    - http://purl.obolibrary.org/obo/MP_0010146  # umbilical hernia

contributors:
  - https://orcid.org/0000-0001-8314-2140  # Ray Stefancsik
  - https://orcid.org/0000-0003-4606-0597  # Susan Bello
  - https://orcid.org/0000-0002-6490-7723  # Anna V. Anagnostopoulos
  - https://orcid.org/0000-0002-9900-7880  # Yvonne M. Bradford
  - https://orcid.org/0000-0002-1373-1705  # Clare Pilgrim

classes:
  herniated: PATO:0000643
  abnormal: PATO:0000460
  anatomical_entity: UBERON:0001062

relations:
  characteristic_of: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  anatomical_entity: "'anatomical_entity'"

name:
  text: "herniated %s"
  vars:
    - anatomical_entity

annotations:
  - annotationProperty: exact_synonym
    text: "hernia of %s"
    vars:
      - anatomical_entity

  - annotationProperty: exact_synonym
    text: "%s hernia"
    vars:
      - anatomical_entity

def:
  text: "A herniated %s which protrudes through an abnormal opening in the wall
    or tissue layer that contains it."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some (
    'herniated' and
    ('characteristic_of' some %s) and
    ('has_modifier' some 'abnormal')
    )"
  vars:
    - anatomical_entity
...
