---
pattern_name: non-functionalAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/non-functionalAnatomicalEntity.yaml

description: 'Use this phenotype pattern when an anatomical entity is unable or
  completely fails to perform its regular function or functions. In cases of
  decreased functionality of the anatomical entity, consider the phenotype
  pattern "abnormallyDecreasedFunctionalityOfAnatomicalEntity.yaml".'

#  examples:
#    - http://purl.obolibrary.org/obo/ZP_0003641  # heart non-functional, abnormal
#    - http://purl.obolibrary.org/obo/HP_0000083  # Renal insufficiency
#    - http://purl.obolibrary.org/obo/MP_0003606  # kidney failure
#    - http://purl.obolibrary.org/obo/HP_0001399  # Hepatic failure
#    - http://purl.obolibrary.org/obo/MP_0003326  # liver failure

contributors:
  - https://orcid.org/0000-0001-8314-2140  # Ray Stefancsik
  - https://orcid.org/0000-0002-7356-1779  # Nicolas Matentzoglu
  - https://orcid.org/0000-0003-4606-0597  # Susan Bello
  - https://orcid.org/0000-0002-6490-7723  # Anna V. Anagnostopoulos

classes:
  non-functional: PATO:0001511
  abnormal: PATO:0000460
  anatomical_entity: UBERON:0001062

relations:
  characteristic_of: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  anatomical_entity: "'anatomical_entity'"

name:
  text: "non-functional %s"
  vars:
    - anatomical_entity

annotations:
  - annotationProperty: exact_synonym
    text: "%s failure"
    vars:
      - anatomical_entity

def:
  text: "Inability or failure of %s to perform its regular function or
    functions."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some (
    'non-functional' and
    ('characteristic_of' some %s) and
    ('has_modifier' some 'abnormal')
    )"
  vars:
    - anatomical_entity
...
