pattern_name: abnormallyApoptoticAnatomicalEntityInLocation
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyApoptoticAnatomicalEntityInLocation.yaml
description : "The presence of abnormal programmed cell death (apoptosis), consisting of blebbing of the nucleus and DNA fragmentation, in an anatomical entity in some location."

contributors:
- https://orcid.org/0000-0002-7356-1779
- https://orcid.org/0000-0002-9900-7880
- https://orcid.org/0000-0002-9611-1279

classes:
  abnormal: PATO:0000460
  anatomical entity: UBERON:0001062
  apoptotic: PATO:0000638
  independent continuant: BFO:0000004

relations:
  inheres_in: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051
  part_of: BFO:0000050

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  anatomical_entity: "'anatomical entity'"
  location: "'independent continuant'"

name:
  text: "abnormally apoptotic %s in %s"
  vars:
   - anatomical_entity
   - location

def:
  text: "An abnormally apoptotic %s in %s."
  vars:
    - anatomical_entity
    - location

annotations:
  - annotationProperty: exact_synonym
    text: "%s %s with apoptosis"
    vars:
     - location
     - anatomical_entity

equivalentTo:
  text: "'has_part' some ('apoptotic' and ('inheres_in' some (%s and ('part_of' some %s))) and ('has_modifier' some 'abnormal'))"
  vars:
    - anatomical_entity
    - location
