pattern_name: abnormallyArrestedBiologicalProcessInLocation
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyArrestedBiologicalProcessInLocation.yaml
description: "A process that started but failed to occur, such as cell migration in the neural crest."

contributors:
  - https://orcid.org/0000-0002-7356-1779
  - https://orcid.org/0000-0001-5208-3432
  - https://orcid.org/0000-0002-9611-1279

classes:
  arrested: PATO:0000297
  abnormal: PATO:0000460
  biological_process: GO:0008150
  independent continuant: BFO:0000004

relations:
  inheres_in: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051
  occurs_in: BFO:0000066

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  biological_process: "'biological_process'"
  location: "'independent continuant'"

name:
  text: "arrested %s in %s"
  vars:
   - biological_process
   - location

annotations:
  - annotationProperty: exact_synonym
    text: "incomplete %s in %s"
    vars:
     - biological_process
     - location
  - annotationProperty: exact_synonym
    text: "failure to complete %s in %s"
    vars:
     - biological_process
     - location
  - annotationProperty: exact_synonym
    text: "failed %s in %s"
    vars:
     - biological_process
     - location
  - annotationProperty: exact_synonym
    text: "%s arrest in %s"
    vars:
     - biological_process
     - location

def:
  text: "Arrested %s in %s."
  vars:
    - biological_process
    - location

equivalentTo:
  text: "'has_part' some ('arrested' and ('inheres_in' some (%s and ('occurs_in' some %s))) and ('has_modifier' some 'abnormal'))"
  vars:
    - biological_process
    - location
