pattern_name: damagedAnatomicalEntityInLocation
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/damagedAnatomicalEntityInLocation.yaml
description: "A damaged or injured anatomical entity in a location, such as HP_0003390 'Sensory axonal neuropathy'. The damage or injury may lead to loss of functionality or cell death."

contributors:
- https://orcid.org/0000-0001-5208-3432
- https://orcid.org/0000-0002-3528-5267
classes:
  damaged: PATO:0001167
  abnormal: PATO:0000460
  anatomical entity: UBERON:0001062
  independent continuant: BFO:0000004

relations:
  inheres_in: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051
  part_of: BFO:0000050


vars:
  anatomical_entity: "'anatomical entity'"
  location: "'independent continuant'"

name:
  text: "damaged %s in the %s"
  vars:
  - anatomical_entity
  - location

def:
  text: "A damaged or injured %s in the %s, that may lead to impaired function."
  vars:
  - anatomical_entity
  - location

equivalentTo:
  text: "'has_part' some ('damaged' and ('inheres_in' some (%s and ('part_of' some %s))) and ('has_modifier' some 'abnormal'))"
  vars:
  - anatomical_entity
  - location
