---
pattern_name: abnormallyOpaqueAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyOpaqueAnatomicalEntity.yaml

description: 'Use this phenotype pattern in case of reduced clarity of an
  anatomical entity, for example, when it is cloudy or shows decreased
  transparency.'

#  examples:
#    - http://purl.obolibrary.org/obo/HP_0000518  # Cataract
#    - http://purl.obolibrary.org/obo/HP_0007787  # Posterior subcapsular cataract
#    - http://purl.obolibrary.org/obo/MP_0001304  # cataract
#    - http://purl.obolibrary.org/obo/MP_0002700  # opacity of vitreous body
#    - http://purl.obolibrary.org/obo/ZP_0002198  # yolk opaque, abnormal

contributors:
  - https://orcid.org/0000-0001-8314-2140  # Ray Stefancsik
  - https://orcid.org/0000-0003-4606-0597  # Susan Bello
  - https://orcid.org/0000-0002-6490-7723  # Anna V. Anagnostopoulos

classes:
  opaque: PATO:0000963
  abnormal: PATO:0000460
  anatomical_entity: UBERON:0001062

relations:
  characteristic_of: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  anatomical_entity: "'anatomical_entity'"

name:
  text: "opaque %s"
  vars:
    - anatomical_entity

annotations:
  - annotationProperty: exact_synonym
    text: "opacity of %s"
    vars:
      - anatomical_entity

  - annotationProperty: exact_synonym
    text: "cloudy %s"
    vars:
      - anatomical_entity

def:
  text: "Impaired ability or inability of light to pass through %s."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some (
    'opaque' and
    ('characteristic_of' some %s) and
    ('has_modifier' some 'abnormal')
    )"
  vars:
    - anatomical_entity
...
