pattern_name: abnormalLevelOfChemicalEntityInLocation
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns/abnormalLevelOfChemicalEntityInLocation.yaml
description: "An abnormal level of a chemical in an anatomical entity, such as abnormal level of sodium in the blood."

contributors:
  - https://orcid.org/0000-0003-4606-0597
  - https://orcid.org/0000-0002-9900-7880
  - https://orcid.org/0000-0002-3528-5267
  - https://orcid.org/0000-0001-5208-3432
  - https://orcid.org/0000-0003-4148-4606
  - https://orcid.org/0000-0001-7941-2961
  - https://orcid.org/0000-0002-7356-1779
  - https://orcid.org/0000-0001-9076-6015

classes:
  amount: PATO:0000070
  abnormal: PATO:0000460
  chemical entity: CHEBI:24431
  independent continuant: BFO:0000004
   
relations: 
  inheres_in: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051
  part_of: BFO:0000050

vars:
  chemical_entity: "'chemical entity'"
  location: "'independent continuant'"

name:
  text: "abnormal %s %s level"
  vars:
   - location
   - chemical_entity

def:
  text: "An abnormal level of %s in the %s."
  vars:
    - chemical_entity
    - location

equivalentTo:
  text: "'has_part' some ('amount' and ('inheres_in' some (%s and ('part_of' some %s))) and ('has_modifier' some 'abnormal'))"
  vars:
    - chemical_entity
    - location
