pattern_name: abnormalAbsenceOfChemicalEntityInLocation
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalAbsenceOfChemicalEntityInLocation.yaml
description: "A chemical (entity) such as sodium is missing from an anatomical location, such as blood."

contributors:
- https://orcid.org/0000-0003-4606-0597
- https://orcid.org/0000-0002-3528-5267
- https://orcid.org/0000-0001-5208-3432
- https://orcid.org/0000-0003-4148-4606
- https://orcid.org/0000-0001-7941-2961
- https://orcid.org/0000-0001-9076-6015
classes:
  absent: PATO:0000462
  abnormal: PATO:0000460
  chemical entity: CHEBI:24431
  independent continuant: BFO:0000004

relations:
  inheres_in: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051
  part_of: BFO:0000050

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  chemical_entity: "'chemical entity'"
  location: "'independent continuant'"
name:
  text: "absent %s in %s"
  vars:
  - chemical_entity
  - location

def:
  text: "Absent or undetectable level of %s in %s."
  vars:
  - chemical_entity
  - location

equivalentTo:
  text: "'has_part' some ('absent' and ('inheres_in' some (%s and ('part_of' some %s))) and ('has_modifier' some 'abnormal'))"
  vars:
  - chemical_entity
  - location
