pattern_name: abnormalShapeOfAnatomicalEntityByShapeType 
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalShapeOfAnatomicalEntityByShapeType.yaml
description: "Anatomical enity with an abnormal shape of a specified shape, e.g. columnar shaped head."

contributors:
  - https://orcid.org/0000-0002-3528-5267
  - https://orcid.org/0000-0001-5208-3432
  - https://orcid.org/0000-0003-4148-4606
  
classes:
  shape: PATO:0000052
  abnormal: PATO:0000460
  anatomical entity: UBERON:0001062 

relations: 
  inheres_in: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym 

vars:
  entity: "'anatomical entity'"
  shape: "'shape'"

name:
  text: "%s %s"
  vars:
   - shape
   - entity

annotations:
  - 
    annotationProperty: exact_synonym
    text: "abnormal %s shape of %s"
    vars:
     - shape
     - entity

def:
  text: "Any structural anomaly that causes %s to be %s shaped."
  vars:
    - entity
    - shape

equivalentTo:
  text: "'has_part' some (%s and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))"
  vars:
    - shape
    - entity
