pattern_name: irregularMassDensityOfAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/irregularMassDensityOfAnatomicalEntity.yaml

description: "Use it in cases of irregular mass density of anatomical entity. Please, note that 'density' in 'irregular density' implies mass density in PATO right now. This is going to change. Area and volume density will be split out and made siblings of mass density. It means that there will be new patterns to be used for phenotypes where irregular mass density is inappropriate, i.e counts of entities per unit area/volume."

#  examples:
#    - http://purl.obolibrary.org/obo/HP_0003948  # Irregular epiphyses of the elbow
#    - http://purl.obolibrary.org/obo/HP_0003301  # Irregular vertebral endplates
#    - http://purl.obolibrary.org/obo/HP_0004019  # Radial metaphyseal irregularity
#    - http://purl.obolibrary.org/obo/ZP_0015028  # iridophore mass density, abnormal

contributors:
  - https://orcid.org/0000-0001-8314-2140  # Ray Stefancsik
  - https://orcid.org/0000-0002-7073-9172  # David Osumi-Sutherland
  - https://orcid.org/0000-0003-4606-0597  # Susan Bello
  - https://orcid.org/0000-0002-9900-7880  # Yvonne M. Bradford

classes:
  irregular_density: PATO:0002141
  abnormal: PATO:0000460
  anatomical_entity: UBERON:0001062

relations:
  characteristic_of: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  anatomical_entity: "'anatomical_entity'"

name:
  text: "irregular mass density of %s"
  vars:
    - anatomical_entity

annotations:
  - annotationProperty: exact_synonym
    text: "irregularity of %s mass density"
    vars:
      - anatomical_entity

def:
  text: "An irregularity in the mass density of %s."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some (
        'irregular_density' and
        'characteristic_of' some %s and
        'has_modifier' some 'abnormal')"
  vars:
    - anatomical_entity
