---
pattern_name: collapsedAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/collapsedAnatomicalEntity.yaml

description: 'Use this phenotype pattern when an anatomical entity has
  collapsed and loses its normal structure by becoming flat or caved in.'

#  examples:
#    - http://purl.obolibrary.org/obo/MP_0006024  # collapsed Reissner membrane
#    - http://purl.obolibrary.org/obo/MP_0012681  # collapsed brain ventricles
#    - http://purl.obolibrary.org/obo/ZP_0000118  # forebrain ventricle collapsed, abnormal
#    - http://purl.obolibrary.org/obo/ZP_0131104  # atrioventricular canal collapsed, abnormal

contributors:
  - https://orcid.org/0000-0001-8314-2140  # Ray Stefancsik
  - https://orcid.org/0000-0002-9900-7880  # Yvonne M. Bradford [ybradford]
  - https://orcid.org/0000-0002-6490-7723  # Anna V. Anagnostopoulos

classes:
  collapsed: PATO:0001478
  abnormal: PATO:0000460
  anatomical_entity: UBERON:0001062

relations:
  characteristic_of: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  anatomical_entity: "'anatomical_entity'"

name:
  text: "collapsed %s"
  vars:
    - anatomical_entity

def:
  text: "A structural failure that affects %s so that it becomes flat or caved
    in."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some (
    'collapsed' and
    ('characteristic_of' some %s) and
    ('has_modifier' some 'abnormal')
    )"
  vars:
    - anatomical_entity
...
