pattern_name: abnormallyPunctateAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyPunctateAnatomicalEntity.yaml

description: 'Use this pattern for punctate morphological phenotypes where the surface of the anatomical entity exhibits dots, punctures, points or pits. Also use this pattern in cases of dotted or stippled anatomical entity surface phenotypes, e.g. epiphyseal stippling.'

#  examples:
#    - http://purl.obolibrary.org/obo/HP_0010158  # Stippling of the epiphysis of the 1st metatarsal
#    - http://purl.obolibrary.org/obo/HP_0010237  # Epiphyseal stippling of finger phalanges
#    - http://purl.obolibrary.org/obo/HP_0010655  # Epiphyseal stippling
#    - http://purl.obolibrary.org/obo/ZP_0002299  # melanocyte punctate, abnormal
#    - http://purl.obolibrary.org/obo/ZP_0015120  # melanophore stripe punctate, abnormal

contributors:
  - https://orcid.org/0000-0001-8314-2140  # Ray Stefancsik
  - https://orcid.org/0000-0002-7073-9172  # David Osumi-Sutherland
  - https://orcid.org/0000-0003-4606-0597  # Susan Bello
  - https://orcid.org/0000-0002-9900-7880  # Yvonne M. Bradford

classes:
  punctate: PATO:0001512
  abnormal: PATO:0000460
  anatomical_entity: UBERON:0001062

relations:
  characteristic_of: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym
  related_synonym: oio:hasRelatedSynonym

vars:
  anatomical_entity: "'anatomical_entity'"

name:
  text: "abnormally punctate %s"
  vars:
    - anatomical_entity

annotations:
  - annotationProperty: related_synonym
    text: "abnormally stippled %s"
    vars:
      - anatomical_entity

def:
  text: "The presence of abnormal dots, punctures, points or pits in %s."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some (
            'punctate' and
            ('characteristic_of' some %s) and
            ('has_modifier' some 'abnormal'))"
  vars:
    - anatomical_entity
