---
pattern_name: abnormallyProtrudingAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormallyProtrudingAnatomicalEntity.yaml

description: 'Use this phenotype pattern template, when an anatomical entity is
  protruding or projecting out or beyond a surface or boundary. When an
  anatomical entity is abnormally protruding or projecting from the body, use
  the more specific pattern of "exsertedAnatomicalEntity" instead of the
  pattern defined below.'

#  examples:
#    - http://purl.obolibrary.org/obo/ZP_0002287  # forebrain protruding, abnormal
#    - http://purl.obolibrary.org/obo/HP_0010808  # Protruding tongue
#    - http://purl.obolibrary.org/obo/MP_0009908  # protruding tongue
#    - http://purl.obolibrary.org/obo/XPO_0115495  # abnormally protruding proctodeum

contributors:
  - https://orcid.org/0000-0001-8314-2140  # Ray Stefancsik
  - https://orcid.org/0000-0002-7356-1779  # Nicolas Matentzoglu
  - https://orcid.org/0000-0003-4606-0597  # Susan Bello
  - https://orcid.org/0000-0002-6490-7723  # Anna V. Anagnostopoulos

classes:
  protruding: PATO:0001598
  abnormal: PATO:0000460
  anatomical_entity: UBERON:0001062

relations:
  characteristic_of: RO:0000052
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym

vars:
  anatomical_entity: "'anatomical_entity'"

name:
  text: "abnormally protruding %s"
  vars:
    - anatomical_entity

annotations:
  - annotationProperty: exact_synonym
    text: "abnormal %s protrusion"
    vars:
      - anatomical_entity
  - annotationProperty: exact_synonym
    text: "protruding %s"
    vars:
      - anatomical_entity

def:
  text: "An abnormally protruding %s that extends out above or beyond an
    anatomical surface or boundary."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some (
    'protruding' and
    ('characteristic_of' some %s) and
    ('has_modifier' some 'abnormal')
    )"
  vars:
    - anatomical_entity
...
