pattern_name: abnormalMorphologyOfPartOfAnatomicalEntity
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalMorphologyOfPartOfAnatomicalEntity.yaml
description: "An morphological abnormality in a part of an anatomical entity. Morphology encompasses shape and colour, but more specific patterns exist. Example: HP:0012718 Morphological abnormality of the gastrointestinal tract. Note that pattern is very powerful, because it captures all parts of an anatomical entity, down to the cells! If in doubt, consider using abnormalMorphologyOfAnatomicalEntity instead, which captures only the abnormal morphology of the referenced anatomical entity as a whole."

contributors:
  - https://orcid.org/0000-0001-5208-3432

  
classes:
  morphology: PATO:0000051
  abnormal: PATO:0000460
  anatomical entity: UBERON:0001062

relations: 
  inheres_in_part_of: RO:0002314
  has_modifier: RO:0002573
  has_part: BFO:0000051

annotationProperties:
  exact_synonym: oio:hasExactSynonym 

vars:
  anatomical_entity: "'anatomical entity'"

name:
  text: "abnormal %s morphology"
  vars:
   - anatomical_entity

annotations:
  - annotationProperty: exact_synonym
    text: "abnormal morphology of %s"
    vars:
     - anatomical_entity     

def:
  text: "Any unspecified morphological anomaly of part of the %s, such as, for example, abnormal shape or colour."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some ('morphology' and ('inheres_in_part_of' some %s) and ('has_modifier' some 'abnormal'))"
  vars:
    - anatomical_entity
