pattern_name: filenameWithoutFileExtension
pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/filenameWithoutFileExtension.yaml
description: "A description that helps people chose this pattern for the appropriate scenario."

contributors:
  - https://orcid.org/0000-0002-9900-7880
  - https://orcid.org/0000-0001-9076-6015
  - https://orcid.org/0000-0003-4148-4606
  - https://orcid.org/0000-0002-3528-5267
  - https://orcid.org/0000-0002-7356-1779 (nico)
  - https://orcid.org/0000-0001-5208-3432 (nicole)
  - https://orcid.org/0000-0001-7941-2961 (leigh)

classes:
  quality: PATO:0000001
  process quality: PATO:0001236
  abnormal: PATO:0000460
  anatomical entity: UBERON:0001062
  biological process: GO:0008150
  chemical entity: CHEBI:24431
  molecular function: GO:0003674

relations: 
  inheres_in: RO:0000052
  inheres_in_part_of: RO:0002314
  has_modifier: RO:0002573
  has_part: BFO:0000051
  occurs_in: BFO:0000066
  part_of: BFO:0000050
  towards: RO:0002503

  
annotationProperties:
  exact_synonym: oio:hasExactSynonym 

vars:
  anatomical_entity: "'anatomical entity'"
  chemical_entity: "'chemical entity'"
  biological_process: "'biological process'"
  molecular_function: "'molecular function'"
  location: "'anatomical entity'"

name:
  text: "abnormal %s"
  vars:
   - anatomical_entity

annotations:
  - annotationProperty: exact_synonym
    text: "abnormality of %s"
    vars:
     - anatomical_entity

def:
  text: "Abnormality of %s."
  vars:
    - anatomical_entity

equivalentTo:
  text: "'has_part' some ('quality' and ('inheres_in' some %s) and ('has_modifier' some 'abnormal'))"
  vars:
    - anatomical_entity
