In 2001, the Minus Five and the Young Fresh Fellows, another McCaughey project, released a split double album, Let the War Against Music Begin/Because We Hate You; the "Let the War Against Music Begin" half was the Minus 5 submission.

After a change of guard at Hollywood Records, the Minus 5 found themselves releasing music via independent channels, with the Return to Sender label releasing a collection of outtakes from Let the War Against Music Begin called I Don't Know Who I Am before McCaughey signed the band to the Yep Roc label for his collaboration with Wilco, Down With Wilco.
Yep Roc later issued an EP dominated by Down With Wilco outtakes, At the Organ, and reissued In Rock, a collection of tunes McCaughey recorded in a single day in 2000.

In 2002, the band contributed a track, "Girl I Never Met" to Rami Jaffee, Pete Yorn, and Marc Dauer's Trampoline Records release: Trampoline Records Volume I.
The band's seventh album, self-titled (but known as The Gun Album), was released early 2006, and features, along the regular line-up, guest appearances by Wilco, Kelly Hogan and The Decemberists' singer/songwriter Colin Meloy, among others.

Buck and McCaughey went on to play in The Baseball Project together in 2008.

The Minus 5 appeared on John Wesley Harding's 2009 release, Who Was Changed and Who Was Dead and released Killingsworth later that year.

In 2012 recorded a version of the 1976 hit single by the Sutherland Brothers and Quiver "Arms of Mary" for a fund raising CD titled "Super Hits Of The Seventies" for radio station WFMU.
 The band played at SXSW in 2013.

In January 2017 The Minus 5 joined Alejandro Escovedo for a short tour.
 For each concert Scott McCaughey, Kurt Bloch, Peter Buck, and John Moen played one set as the Minus Five, and then a second set backing Escovedo, sometimes with Kelly Hogan, too.
 All of them had also performed on Escovedo's 2016 album Burn Something Beautiful, for which Escovedo, McCaughey, and Buck co-wrote the songs.
In 2001, the Minus Five and the Young Fresh Fellows, another McCaughey project, released a split double album, Let the War Against Music Begin/Because We Hate You; the "Let the War Against Music Begin" half was the Minus 5 submission.
After a change of guard at Hollywood Records, the Minus 5 found themselves releasing music via independent channels, with the Return to Sender label releasing a collection of outtakes from Let the War Against Music Begin called I Don't Know Who I Am before McCaughey signed the band to the Yep Roc label for his collaboration with Wilco, Down With Wilco. Yep Roc later issued an EP dominated by Down With Wilco outtakes, At the Organ, and reissued In Rock, a collection of tunes McCaughey recorded in a single day in 2000.
In 2002, the band contributed a track, "Girl I Never Met" to Rami Jaffee, Pete Yorn, and Marc Dauer's Trampoline Records release: Trampoline Records Volume I.
The band's seventh album, self-titled (but known as The Gun Album), was released early 2006, and features, along the regular line-up, guest appearances by Wilco, Kelly Hogan and The Decemberists' singer/songwriter Colin Meloy, among others.
Buck and McCaughey went on to play in The Baseball Project together in 2008.
The Minus 5 appeared on John Wesley Harding's 2009 release, Who Was Changed and Who Was Dead and released Killingsworth later that year.
In 2012 recorded a version of the 1976 hit single by the Sutherland Brothers and Quiver "Arms of Mary" for a fund raising CD titled "Super Hits Of The Seventies" for radio station WFMU.  The band played at SXSW in 2013.
In January 2017 The Minus 5 joined Alejandro Escovedo for a short tour.  For each concert Scott McCaughey, Kurt Bloch, Peter Buck, and John Moen played one set as the Minus Five, and then a second set backing Escovedo, sometimes with Kelly Hogan, too.  All of them had also performed on Escovedo's 2016 album Burn Something Beautiful, for which Escovedo, McCaughey, and Buck co-wrote the songs.
The Minus 5