After achieving success with Caen during the 2007–08 Ligue 1 season, it was suspected Gouffran would make a move elsewhere.
After consistent rumours linking him primarily with English Premier League club Arsenal, including rumors of him signing a pre-contract agreement with the club, Gouffran opted to stay in Ligue 1, signing a four-year contract with Bordeaux.
The transfer fee was priced at €6.5 million and he officially joined the club on 30 June 2008.
After starting the league season off with no league goals after 26 matches, he finally scored his first league goal for Bordeaux on 29 April 2009 in a key match against Rennes, which Bordeaux won 3–2.
On the final matchday of the season, 30 May, he scored the winning goal that secured Bordeaux the championship, against his former club Caen who were relegated to Ligue 2.
He also scored one of the goals as Bordeaux won the 2009 Coupe de la Ligue Final against Vannes OC.

Gouffran denied league leaders Paris Saint-Germain's attempt at winning seven straight Ligue 1 games, when he scored the equalizer in a 1–1 home draw on 6 November 2011.
 The result meant that Bordeaux had drawn six of their first seven league games.

Gouffran finished with Bordeaux half way through the 2012–13 season with 8 goals in 20 games.
After achieving success with Caen during the 2007–08 Ligue 1 season, it was suspected Gouffran would make a move elsewhere. After consistent rumours linking him primarily with English Premier League club Arsenal, including rumors of him signing a pre-contract agreement with the club, Gouffran opted to stay in Ligue 1, signing a four-year contract with Bordeaux. The transfer fee was priced at €6.5 million and he officially joined the club on 30 June 2008. After starting the league season off with no league goals after 26 matches, he finally scored his first league goal for Bordeaux on 29 April 2009 in a key match against Rennes, which Bordeaux won 3–2. On the final matchday of the season, 30 May, he scored the winning goal that secured Bordeaux the championship, against his former club Caen who were relegated to Ligue 2. He also scored one of the goals as Bordeaux won the 2009 Coupe de la Ligue Final against Vannes OC.
Gouffran denied league leaders Paris Saint-Germain's attempt at winning seven straight Ligue 1 games, when he scored the equalizer in a 1–1 home draw on 6 November 2011.  The result meant that Bordeaux had drawn six of their first seven league games.
Gouffran finished with Bordeaux half way through the 2012–13 season with 8 goals in 20 games.
Yoan Gouffran