As of June 2020, Index Fungorum accepts 23 species of Neoprotoparmelia.

Neoprotoparmelia amerisidiata Garima Singh & Aptroot (2018) – southeastern USA
Neoprotoparmelia australisidiata Garima Singh & Aptroot (2018) – Australia
Neoprotoparmelia brasilisidiata Garima Singh, M.Cáceres & Aptroot (2018) – South and Central tropical America
Neoprotoparmelia camptotheca (Fée) L.A.Santos & Lücking (2019) – Brazil
Neoprotoparmelia capensis V.J.Rico, A. Crespo & Garima Singh (2018) – South Africa
Neoprotoparmelia capitata (Lendemer) Garima Singh, Lumbsch & I.Schmitt (2018) – Brazil; USA
Neoprotoparmelia corallifera (Kantvilas & Papong) Garima Singh, Lumbsch & I.Schmitt (2018) – Thailand
Neoprotoparmelia crassa Garima Singh & Aptroot (2018) – Australia
Neoprotoparmelia isidiata (Diederich, Aptroot & Sérus.)
Garima Singh, Lumbsch & I.Schmitt (2018) – Papua New Guinea
Neoprotoparmelia multifera (Nyl.)
Garima Singh, Lumbsch & I.Schmitt (2018) – South America
Neoprotoparmelia nigra L.A.Santos, Lücking & Aptroot (2019) – Brazil
Neoprotoparmelia orientalis (Kantvilas & Papong) Garima Singh, Lumbsch & I.Schmitt (2018) – Thailand
Neoprotoparmelia paramultifera L.A.Santos, M.Cáceres & Aptroot (2019) – Brazil
Neoprotoparmelia paulii V.J.Rico, Lumbsch & Garima Singh (2018) – Kenya
Neoprotoparmelia plurisporibadia Garima Singh, M.Cáceres & Aptroot (2018) – Brazil
Neoprotoparmelia pseudomultifera L.A.Santos, Lücking & Aptroot (2019) – Brazil
Neoprotoparmelia pulchra (Diederich, Aptroot & Sérus.)
Garima Singh, Lumbsch & I.Schmitt (2018) – Papua New Guinea
Neoprotoparmelia purpurea L.A.Santos, Lücking & Aptroot (2019) – Brazil
Neoprotoparmelia rogersii (Elix) Sipman (2019) – Australia
Neoprotoparmelia rubrofusca Lücking & L.A.Santos (2019) – Colombia
Neoprotoparmelia saxicola (Aptroot & M.Cáceres) L.A.Santos, M.Cáceres & Aptroot (2019)
Neoprotoparmelia sexdecimspora L.A.Santos, M.Cáceres & Aptroot (2019) – Brazil
Neoprotoparmelia siamisidiata Garima Singh & Aptroot (2018) – Thailand
As of June 2020, Index Fungorum accepts 23 species of Neoprotoparmelia.
Neoprotoparmelia amerisidiata Garima Singh & Aptroot (2018) – southeastern USA
Neoprotoparmelia australisidiata Garima Singh & Aptroot (2018) – Australia
Neoprotoparmelia brasilisidiata Garima Singh, M.Cáceres & Aptroot (2018) – South and Central tropical America
Neoprotoparmelia camptotheca (Fée) L.A.Santos & Lücking (2019) – Brazil
Neoprotoparmelia capensis V.J.Rico, A. Crespo & Garima Singh (2018) – South Africa
Neoprotoparmelia capitata (Lendemer) Garima Singh, Lumbsch & I.Schmitt (2018) – Brazil; USA
Neoprotoparmelia corallifera (Kantvilas & Papong) Garima Singh, Lumbsch & I.Schmitt (2018) – Thailand
Neoprotoparmelia crassa Garima Singh & Aptroot (2018) – Australia
Neoprotoparmelia isidiata (Diederich, Aptroot & Sérus.) Garima Singh, Lumbsch & I.Schmitt (2018) – Papua New Guinea
Neoprotoparmelia multifera (Nyl.) Garima Singh, Lumbsch & I.Schmitt (2018) – South America
Neoprotoparmelia nigra L.A.Santos, Lücking & Aptroot (2019) – Brazil
Neoprotoparmelia orientalis (Kantvilas & Papong) Garima Singh, Lumbsch & I.Schmitt (2018) – Thailand
Neoprotoparmelia paramultifera L.A.Santos, M.Cáceres & Aptroot (2019) – Brazil
Neoprotoparmelia paulii V.J.Rico, Lumbsch & Garima Singh (2018) – Kenya
Neoprotoparmelia plurisporibadia Garima Singh, M.Cáceres & Aptroot (2018) – Brazil
Neoprotoparmelia pseudomultifera L.A.Santos, Lücking & Aptroot (2019) – Brazil
Neoprotoparmelia pulchra (Diederich, Aptroot & Sérus.) Garima Singh, Lumbsch & I.Schmitt (2018) – Papua New Guinea
Neoprotoparmelia purpurea L.A.Santos, Lücking & Aptroot (2019) – Brazil
Neoprotoparmelia rogersii (Elix) Sipman (2019) – Australia
Neoprotoparmelia rubrofusca Lücking & L.A.Santos (2019) – Colombia
Neoprotoparmelia saxicola (Aptroot & M.Cáceres) L.A.Santos, M.Cáceres & Aptroot (2019)
Neoprotoparmelia sexdecimspora L.A.Santos, M.Cáceres & Aptroot (2019) – Brazil
Neoprotoparmelia siamisidiata Garima Singh & Aptroot (2018) – Thailand
Neoprotoparmelia