High schools
Brazoswood High School (Clute; Grades 9-12; Mascot: Buccaneers)
Brazosport High School (Freeport; Grades 9-12; Mascot: Exporters)
5-8 schools
Clute Intermediate School (Clute; Grades 5-6 & 7-8; Mascot: Cougars)
Intermediate Schools (7-8)
Freeport Intermediate School (Freeport; Grades 7-8; Mascot: Redskins)
2001-02 National Blue Ribbon School 
Lake Jackson Intermediate School (Lake Jackson; Grades 7-8; Mascot: Panthers)
Middle Schools (5-6)
R. O'Hara Lanier Middle School (Freeport; Grades: 5-6; Mascot: Lions)
Grady B. Rasco Middle School (Lake Jackson; Grades: 5-6; Mascot: Rockets)
Elementary Schools
Stephen F. Austin Elementary (Jones Creek; Grades: PreK-6)
A. P. Beutel Elementary School (Lake Jackson; Grades: K-4) - Its current building was scheduled to open in 2017.

2007 National Blue Ribbon School 
Bess Brannen Elementary School (Lake Jackson; Grades: K-4)
Freeport Elementary School - The $19.2 million facility opened in 2018.
VLK Architects designed the building.
The student capacity is 750.

Madge Griffith Elementary School (Clute; Grades: K-4)
Elisabeth Ney Elementary School (Lake Jackson; Grades: K-4)
T. W. Ogg Elementary (Clute; Grades: K-4)
1996-97 National Blue Ribbon School 
Gladys Polk Elementary (Richwood; Grades: K-4)
O. M. Roberts Elementary (Lake Jackson; Grades: K-4)
Velasco Elementary School (Freeport; Grades: 2-4) - It was a Kindergarten through grade 4 school until 2017, when it became a grade 2-4 school for all of Freeport.
Grades K-1 were moved to O. A. Fleming Elementary, which was scheduled to close in 2018 and be replaced by Freeport Elementary.

Alternative School
Lighthouse Learning Center (Clute; All Grades)
High schools
Brazoswood High School (Clute; Grades 9-12; Mascot: Buccaneers)
Brazosport High School (Freeport; Grades 9-12; Mascot: Exporters)
5-8 schools
Clute Intermediate School (Clute; Grades 5-6 & 7-8; Mascot: Cougars)
Intermediate Schools (7-8)
Freeport Intermediate School (Freeport; Grades 7-8; Mascot: Redskins)
2001-02 National Blue Ribbon School 
Lake Jackson Intermediate School (Lake Jackson; Grades 7-8; Mascot: Panthers)
Middle Schools (5-6)
R. O'Hara Lanier Middle School (Freeport; Grades: 5-6; Mascot: Lions)
Grady B. Rasco Middle School (Lake Jackson; Grades: 5-6; Mascot: Rockets)
Elementary Schools
Stephen F. Austin Elementary (Jones Creek; Grades: PreK-6)
A. P. Beutel Elementary School (Lake Jackson; Grades: K-4) - Its current building was scheduled to open in 2017.
2007 National Blue Ribbon School 
Bess Brannen Elementary School (Lake Jackson; Grades: K-4)
Freeport Elementary School - The $19.2 million facility opened in 2018. VLK Architects designed the building. The student capacity is 750.
Madge Griffith Elementary School (Clute; Grades: K-4)
Elisabeth Ney Elementary School (Lake Jackson; Grades: K-4)
T. W. Ogg Elementary (Clute; Grades: K-4)
1996-97 National Blue Ribbon School 
Gladys Polk Elementary (Richwood; Grades: K-4)
O. M. Roberts Elementary (Lake Jackson; Grades: K-4)
Velasco Elementary School (Freeport; Grades: 2-4) - It was a Kindergarten through grade 4 school until 2017, when it became a grade 2-4 school for all of Freeport. Grades K-1 were moved to O. A. Fleming Elementary, which was scheduled to close in 2018 and be replaced by Freeport Elementary.
Alternative School
Lighthouse Learning Center (Clute; All Grades)
Brazosport Independent School District