It seems some poster can not read more than what they want things to say.  The EO clearly says: "...Upon the resumption of USRAP admissions, the Secretary of State, in consultation with the Secretary of Homeland Security, is further directed to make changes, to the extent permitted by law, to prioritize refugee claims made by individuals on the basis of religious-based persecution, provided that the religion of the individual is a minority religion in the individual's country of nationality."  
The EO clearly gives priority to individuals on the basis of their religion.