i definitely think he's better than Carter.  They both played 7 full seasons in Toronto, Carter wound up with a slash line as a Jay:

.257/.308/.473 (.782 OPS)

To include this season, Jose's Jay slash line would be:

.261/.383/.537 (.921 OPS)

That's miles better than Carter.

Of course, Carter has the home run, which will always be up there as a top-2 moment (him and Alomar vs Eck battle for that #1 spot), but the bat flip is no slouch either.  

If I had a top 5, it'd be:  Alomar, Halladay, Stieb, Delgado, Bautista.