alkzar90 commited on
Commit
fff2423
1 Parent(s): ec2aad6

add custom script

Browse files
Files changed (1) hide show
  1. cell_benchmark.py +87 -0
cell_benchmark.py ADDED
@@ -0,0 +1,87 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ import os
2
+ import datasets
3
+ #from datasets import DownloadManager, DatasetInfo
4
+
5
+ _DESCRIPTION = """\
6
+ A segmentation dataset for [TODO: complete...]
7
+ """
8
+
9
+
10
+ _HOMEPAGE = "https://huggingface.co/datasets/alkzar90/cell_benchmark"
11
+ _EXTENSION = [".jpg", ".png"]
12
+ _URL_BASE = "https://huggingface.co/datasets/alkzar90/cell_benchmark/resolve/main/data/"
13
+ _SPLIT_URLS = {
14
+ "train": _URL_BASE + "train.zip",
15
+ "val": _URL_BASE + "val.zip",
16
+ "test": _URL_BASE + "test.zip",
17
+ "masks": _URL_BASE + "masks.zip",
18
+ }
19
+
20
+
21
+
22
+ class Cellsegmentation(datasets.GeneratorBasedBuilder):
23
+
24
+ def _info(self) -> DatasetInfo:
25
+ features = datasets.Features({
26
+ "image": datasets.Image(),
27
+ "masks": datasets.Image(),
28
+ "path" : datasets.Value("string"),
29
+ })
30
+ return datasets.DatasetInfo(
31
+ description=_DESCRIPTION,
32
+ features=datasets.Features(features),
33
+ supervised_keys=("image", "masks"),
34
+ homepage_HOMEPAGE,
35
+ citation="",
36
+ )
37
+
38
+
39
+ def _split_generators(self, dl_manager):
40
+ data_files = dl_manager.download_and_extract(_SPLIT_URLS)
41
+ splits = [
42
+ datasets.SplitGenerator(
43
+ name=datasets.Split.TRAIN,
44
+ gen_kwargs={
45
+ "files" : dl_manager.iter_files([data_files["train"]]),
46
+ "masks": data_files["masks"],
47
+ "split": "training",
48
+ },
49
+ ),
50
+ datasets.SplitGenerator(
51
+ name=datasets.Split.VALIDATION,
52
+ gen_kwargs={
53
+ "files" : dl_manager.iter_files([data_files["validation"]]),
54
+ "masks": data_files["masks"],
55
+ "split": "validation",
56
+ },
57
+ ),
58
+ datasets.SplitGenerator(
59
+ name=datasets.Split.TEST,
60
+ gen_kwargs={
61
+ "files" : dl_manager.iter_files([data_files["test"]]),
62
+ "masks": data_files["masks"],
63
+ "split": "test",
64
+ }
65
+ )
66
+ ]
67
+ return splits
68
+
69
+
70
+ def _generate_examples(self, files, masks, split):
71
+ mask_path = os.path.basename(masks)
72
+ for i, path in enumereate(files):
73
+ file_name = os.path.basename(path)
74
+ yield i, {
75
+ "image": path,
76
+ "masks": mask_path + "mask_" + file_name.replace("jpg", "png"),
77
+ "path": path,
78
+ }
79
+
80
+
81
+
82
+
83
+
84
+
85
+
86
+
87
+