Network representation learning (NRL) aims to learn low-dimensional vectors for vertices in a network. Most existing NRL methods focus on learning representations from local context of vertices (such as their neighbors). Nevertheless, vertices in many complex networks also exhibit significant global patterns widely known as communities. It's intuitive that vertices in the same community tend to connect densely and share common attributes. These patterns are expected to improve NRL and benefit relevant evaluation tasks, such as link prediction and vertex classification. Inspired by the analogy between network representation learning and text modeling, we propose a unified NRL framework by introducing community information of vertices, named as Community-enhanced Network Representation Learning (CNRL). CNRL simultaneously detects community distribution of each vertex and learns embeddings of both vertices and communities. Moreover, the proposed community enhancement mechanism can be applied to various existing NRL models. In experiments, we evaluate our model on vertex classification, link prediction, and community detection using several real-world datasets. The results demonstrate that CNRL significantly and consistently outperforms other state-of-the-art methods while verifying our assumptions on the correlations between vertices and communities.
Traditional methods use hand-crafted similarity measurements such as common neighbors @cite_6 , Salton index @cite_10 , Jaccard index and resource allocation index @cite_5 for link prediction. Besides these topology-based methods, link propagation methods @cite_65 @cite_60 are based on graph regularization, which is a common approach in semi-supervised learning. Matrix factorization methods @cite_61 predict links by adapting matrix completion technic to the adjacency matrix. Further, people employ tensor to develop temporal model @cite_47 for link prediction on dynamic networks. Other methods improve the effect of link prediction by taking information like community affinity @cite_73 and vertex attribute @cite_20 into account.
@cite_61 @cite_60 @cite_65 @cite_6 @cite_5 @cite_47 @cite_73 @cite_10 @cite_20
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In this paper we discuss a very simple approach of combining content and link information in graph structures for the purpose of community discovery, a fundamental task in network analysis. Our approach hinges on the basic intuition that many networks contain noise in the link structure and that content information can help strengthen the community signal. This enables ones to eliminate the impact of noise (false positives and false negatives), which is particularly prevalent in online social networks and Web-scale information networks. Specifically we introduce a measure of signal strength between two nodes in the network by fusing their link strength with content similarity. Link strength is estimated based on whether the link is likely (with high probability) to reside within a community. Content similarity is estimated through cosine similarity or Jaccard coefficient. We discuss a simple mechanism for fusing content and link similarity. We then present a biased edge sampling procedure which retains edges that are locally relevant for each graph node. The resulting backbone graph can be clustered using standard community discovery algorithms such as Metis and Markov clustering. Through extensive experiments on multiple real-world datasets (Flickr, Wikipedia and CiteSeer) with varying sizes and characteristics, we demonstrate the effectiveness and efficiency of our methods over state-of-the-art learning and mining approaches several of which also attempt to combine link and content analysis for the purposes of community discovery. Specifically we always find a qualitative benefit when combining content with link analysis. Additionally our biased graph sampling approach realizes a quantitative benefit in that it is typically several orders of magnitude faster than competing approaches. The nearestor near-neighbor query problems arise in a large variety of database applications, usually in the context of similarity searching. Of late, there has been increasing interest in building search index structures for performing similarity search over high-dimensional data, e.g., image databases, document collections, time-series databases, and genome databases. Unfortunately, all known techniques for solving this problem fall prey to the of dimensionality." That is, the data structures scale poorly with data dimensionality; in fact, if the number of dimensions exceeds 10 to 20, searching in k-d trees and related structures involves the inspection of a large fraction of the database, thereby doing no better than brute-force linear search. It has been suggested that since the selection of features and the choice of a distance metric in typical applications is rather heuristic, determining an approximate nearest neighbor should su ce for most practical purposes. In this paper, we examine a novel scheme for approximate similarity search based on hashing. The basic idea is to hash the points Supported by NAVY N00014-96-1-1221 grant and NSF Grant IIS-9811904. Supported by Stanford Graduate Fellowship and NSF NYI Award CCR-9357849. Supported by ARO MURI Grant DAAH04-96-1-0007, NSF Grant IIS-9811904, and NSF Young Investigator Award CCR9357849, with matching funds from IBM, Mitsubishi, Schlumberger Foundation, Shell Foundation, and Xerox Corporation. Permission to copy without fee all or part of this material is granted provided that the copies are not made or distributed for direct commercial advantage, the VLDB copyright notice and the title of the publication and its date appear, and notice is given that copying is by permission of the Very Large Data Base Endowment. To copy otherwise, or to republish, requires a fee and or special permission from the Endowment. Proceedings of the 25th VLDB Conference, Edinburgh, Scotland, 1999. from the database so as to ensure that the probability of collision is much higher for objects that are close to each other than for those that are far apart. We provide experimental evidence that our method gives signi cant improvement in running time over other methods for searching in highdimensional spaces based on hierarchical tree decomposition. Experimental results also indicate that our scheme scales well even for a relatively large number of dimensions (more than 50). Missing link prediction in networks is of both theoretical interest and practical significance in modern science. In this paper, we empirically investigate a simple framework of link prediction on the basis of node similarity. We compare nine well-known local similarity measures on six real networks. The results indicate that the simplest measure, namely Common Neighbours, has the best overall performance, and the Adamic-Adar index performs second best. A new similarity measure, motivated by the resource allocation process taking place on networks, is proposed and shown to have higher prediction accuracy than common neighbours. It is found that many links are assigned the same scores if only the information of the nearest neighbours is used. We therefore design another new measure exploiting information on the next nearest neighbours, which can remarkably enhance the prediction accuracy. Abstract We propose a novel approach to solving the approximate k-nearest neighbor search problem in metric spaces. The search structure is based on a navigable small world graph with vertices corresponding to the stored elements, edges to links between them, and a variation of greedy algorithm for searching. The navigable small world is created simply by keeping old Delaunay graph approximation links produced at the start of construction. The approach is very universal, defined in terms of arbitrary metric spaces and at the same time it is very simple. The algorithm handles insertions in the same way as queries: by finding approximate neighbors for the inserted element and connecting it to them. Both search and insertion can be done in parallel requiring only local information from the structure. The structure can be made distributed. The accuracy of the probabilistic k-nearest neighbor queries can be adjusted without rebuilding the structure. The performed simulation for data in the Euclidean spaces shows that the structure built using the proposed algorithm has small world navigation properties with log 2 ( n ) insertion and search complexity at fixed accuracy, and performs well at high dimensionality. Simulation on a CoPHiR dataset revealed its high efficiency in case of large datasets (more than an order of magnitude less metric computations at fixed recall) compared to permutation indexes. Only 0.03 of the 10 million 208-dimensional vector dataset is needed to be evaluated to achieve 0.999 recall (virtually exact search). For recall 0.93 processing speed 2800 queries s can be achieved on a dual Intel X5675 Xenon server node with Java implementation. We introduce a new probabilistic proximity search algorithm for range and A"-nearest neighbor (A"-NN) searching in both coordinate and metric spaces. Although there exist solutions for these problems, they boil down to a linear scan when the space is intrinsically high dimensional, as is the case in many pattern recognition tasks. This, for example, renders the A"-NN approach to classification rather slow in large databases. Our novel idea is to predict closeness between elements according to how they order their distances toward a distinguished set of anchor objects. Each element in the space sorts the anchor objects from closest to farthest to it and the similarity between orders turns out to be an excellent predictor of the closeness between the corresponding elements. We present extensive experiments comparing our method against state-of-the-art exact and approximate techniques, both in synthetic and real, metric and nonmetric databases, measuring both CPU time and distance computations. The experiments demonstrate that our technique almost always improves upon the performance of alternative techniques, in some cases by a wide margin. We propose a novel approach to performing efficient similarity search and classification in high dimensional data. In this framework, the database elements are vectors in a Euclidean space. Given a query vector in the same space, the goal is to find elements of the database that are similar to the query. In our approach, a small number of independent "voters" rank the database elements based on similarity to the query. These rankings are then combined by a highly efficient aggregation algorithm. Our methodology leads both to techniques for computing approximate nearest neighbors and to a conceptually rich alternative to nearest neighbors.One instantiation of our methodology is as follows. Each voter projects all the vectors (database elements and the query) on a random line (different for each voter), and ranks the database elements based on the proximity of the projections to the projection of the query. The aggregation rule picks the database element that has the best median rank. This combination has several appealing features. On the theoretical side, we prove that with high probability, it produces a result that is a (1 + e) factor approximation to the Euclidean nearest neighbor. On the practical side, it turns out to be extremely efficient, often exploring no more than 5 of the data to obtain very high-quality results. This method is also database-friendly, in that it accesses data primarily in a pre-defined order without random accesses, and, unlike other methods for approximate nearest neighbors, requires almost no extra storage. Also, we extend our approach to deal with the k nearest neighbors.We conduct two sets of experiments to evaluate the efficacy of our methods. Our experiments include two scenarios where nearest neighbors are typically employed---similarity search and classification problems. In both cases, we study the performance of our methods with respect to several evaluation criteria, and conclude that they are uniformly excellent, both in terms of quality of results and in terms of efficiency. Structured data including sets, sequences, trees and graphs, pose significant challenges to fundamental aspects of data management such as efficient storage, indexing, and similarity search. With the fast accumulation of graph databases, similarity search in graph databases has emerged as an important research topic. Graph similarity search has applications in a wide range of domains including cheminformatics, bioinformatics, sensor network management, social network management, and XML documents, among others. Most of the current graph indexing methods focus on subgraph query processing, i.e. determining the set of database graphs that contains the query graph and hence do not directly support similarity search. In data mining and machine learning, various graph kernel functions have been designed to capture the intrinsic similarity of graphs. Though successful in constructing accurate predictive and classification models for supervised learning, graph kernel functions have (i) high computational complexity and (ii) non-trivial difficulty to be indexed in a graph database. Our objective is to bridge graph kernel function and similarity search in graph databases by proposing (i) a novel kernel-based similarity measurement and (ii) an efficient indexing structure for graph data management. Our method of similarity measurement builds upon local features extracted from each node and their neighboring nodes in graphs. A hash table is utilized to support efficient storage and fast search of the extracted local features. Using the hash table, a graph kernel function is defined to capture the intrinsic similarity of graphs and for fast similarity query processing. We have implemented our method, which we have named G-hash, and have demonstrated its utility on large chemical graph databases. Our results show that the G-hash method achieves state-of-the-art performance for k-nearest neighbor (k-NN) classification. Most importantly, the new similarity measurement and the index structure is scalable to large database with smaller indexing size, faster indexing construction time, and faster query processing time as compared to state-of-the-art indexing methods such as C-tree, gIndex, and GraphGrep. Knowledge graphs contain knowledge about the world and provide a structured representation of this knowledge. Current knowledge graphs contain only a small subset of what is true in the world. Link prediction approaches aim at predicting new links for a knowledge graph given the existing links between the entities. Tensor factorization approaches have proved promising for such link prediction problems. Proposed in 1927, Canonical Polyadic (CP) decomposition is among the first tensor factorization approaches. CP generally performs poorly for link prediction as it learns two independent embedding vectors for each entity, whereas they are really tied. We present a simple enhancement (which we call SimplE) of CP to allow the two embeddings of each entity to be learned dependently. The complexity of SimplE grows linearly with the size of embeddings. The embeddings learned through SimplE are interpretable, and certain types of background knowledge in terms of logical rules can be incorporated into these embeddings through weight tying. We prove SimplE is fully-expressive and derive a bound on the size of its embeddings for full expressivity. We show empirically that, despite its simplicity, SimplE outperforms several state-of-the-art tensor factorization techniques. Link prediction is a fundamental problem in social network analysis. The key technique in unsupervised link prediction is to find an appropriate similarity measure between nodes of a network. A class of wildly used similarity measures are based on random walk on graph. The traditional random walk (TRW) considers the link structures by treating all nodes in a network equivalently, and ignores the centrality of nodes of a network. However, in many real networks, nodes of a network not only prefer to link to the similar node, but also prefer to link to the central nodes of the network. To address this issue, we use maximal entropy random walk (MERW) for link prediction, which incorporates the centrality of nodes of the network. First, we study certain important properties of MERW on graph @math by constructing an eigen-weighted graph G. We show that the transition matrix and stationary distribution of MERW on G are identical to the ones of TRW on G. Based on G, we further give the maximal entropy graph Laplacians, and show how to fast compute the hitting time and commute time of MERW. Second, we propose four new graph kernels and two similarity measures based on MERW for link prediction. Finally, to exhibit the power of MERW in link prediction, we compare 27 various link prediction methods over 3 synthetic and 8 real networks. The results show that our newly proposed MERW based methods outperform the state-of-the-art method on most datasets. We present a new method for clustering based on compression. The method does not use subject-specific features or background knowledge, and works as follows: First, we determine a parameter-free, universal, similarity distance, the normalized compression distance or NCD, computed from the lengths of compressed data files (singly and in pairwise concatenation). Second, we apply a hierarchical clustering method. The NCD is not restricted to a specific application area, and works across application area boundaries. A theoretical precursor, the normalized information distance, co-developed by one of the authors, is provably optimal. However, the optimality comes at the price of using the noncomputable notion of Kolmogorov complexity. We propose axioms to capture the real-world setting, and show that the NCD approximates optimality. To extract a hierarchy of clusters from the distance matrix, we determine a dendrogram (ternary tree) by a new quartet method and a fast heuristic to implement it. The method is implemented and available as public software, and is robust under choice of different compressors. To substantiate our claims of universality and robustness, we report evidence of successful application in areas as diverse as genomics, virology, languages, literature, music, handwritten digits, astronomy, and combinations of objects from completely different domains, using statistical, dictionary, and block sorting compressors. In genomics, we presented new evidence for major questions in Mammalian evolution, based on whole-mitochondrial genomic analysis: the Eutherian orders and the Marsupionta hypothesis against the Theria hypothesis. This work addresses graph-based semi-supervised classification and betweenness computation in large, sparse, networks (several millions of nodes). The objective of semi-supervised classification is to assign a label to unlabeled nodes using the whole topology of the graph and the labeling at our disposal. Two approaches are developed to avoid explicit computation of pairwise proximity between the nodes of the graph, which would be impractical for graphs containing millions of nodes. The first approach directly computes, for each class, the sum of the similarities between the nodes to classify and the labeled nodes of the class, as suggested initially in [1,2]. Along this approach, two algorithms exploiting different state-of-the-art kernels on a graph are developed. The same strategy can also be used in order to compute a betweenness measure. The second approach works on a trellis structure built from biased random walks on the graph, extending an idea introduced in [3]. These random walks allow to define a biased bounded betweenness for the nodes of interest, defined separately for each class. All the proposed algorithms have a linear computing time in the number of edges while providing good results, and hence are applicable to large sparse networks. They are empirically validated on medium-size standard data sets and are shown to be competitive with state-of-the-art techniques. Finally, we processed a novel data set, which is made available for benchmarking, for multi-class classification in a large network: the U.S. patents citation network containing 3M nodes (of six different classes) and 38M edges. The three proposed algorithms achieve competitive results (around 85 classification rate) on this large network-they classify the unlabeled nodes within a few minutes on a standard workstation. In this paper, we present a new framework for geo-locating an image utilizing a novel multiple nearest neighbor feature matching method using Generalized Minimum Clique Graphs (GMCP). First, we extract local features (e.g., SIFT) from the query image and retrieve a number of nearest neighbors for each query feature from the reference data set. Next, we apply our GMCP-based feature matching to select a single nearest neighbor for each query feature such that all matches are globally consistent. Our approach to feature matching is based on the proposition that the first nearest neighbors are not necessarily the best choices for finding correspondences in image matching. Therefore, the proposed method considers multiple reference nearest neighbors as potential matches and selects the correct ones by enforcing consistency among their global features (e.g., GIST) using GMCP. In this context, we argue that using a robust distance function for finding the similarity between the global features is essential for the cases where the query matches multiple reference images with dissimilar global features. Towards this end, we propose a robust distance function based on the Gaussian Radial Basis Function (G-RBF). We evaluated the proposed framework on a new data set of 102k street view images; the experiments show it outperforms the state of the art by 10 percent. Abstract Many networks derived from society and nature are temporal and incomplete. The temporal link prediction problem in networks is to predict links at time T + 1 based on a given temporal network from time 1 to T , which is essential to important applications. The current algorithms either predict the temporal links by collapsing the dynamic networks or collapsing features derived from each network, which are criticized for ignoring the connection among slices. to overcome the issue, we propose a novel graph regularized nonnegative matrix factorization algorithm (GrNMF) for the temporal link prediction problem without collapsing the dynamic networks. To obtain the feature for each network from 1 to t , GrNMF factorizes the matrix associated with networks by setting the rest networks as regularization, which provides a better way to characterize the topological information of temporal links. Then, the GrNMF algorithm collapses the feature matrices to predict temporal links. Compared with state-of-the-art methods, the proposed algorithm exhibits significantly improved accuracy by avoiding the collapse of temporal networks. Experimental results of a number of artificial and real temporal networks illustrate that the proposed method is not only more accurate but also more robust than state-of-the-art approaches. Hashing methods have been widely used for approximate nearest neighbor search in recent years due to its computational and storage effectiveness. Most existing multimodal hashing methods try to preserve the similarity relationship based on either metric distances or semantic labels in a procrustean way, while ignoring the intra-class and inter-class variations inherent in the metric space. In this paper, we propose a novel multimodal hashing method, termed as semantic neighbor graph hashing (SNGH), which aims to preserve the fine-grained similarity metric based on the semantic graph that is constructed by jointly pursuing the semantic supervision and the local neighborhood structure. Specifically, the semantic graph is constructed to capture the local similarity structure for the image modality and the text modality, respectively. Furthermore, we define a function based on the local similarity in particular to adaptively calculate multi-level similarities by encoding the intra-class and inter-class variations. After obtaining the unified hash codes, the logistic regression with kernel trick is employed to learn view-specific hash functions independently for each modality. Extensive experiments are conducted on four widely used multimodal data sets. The experimental results demonstrate the superiority of the proposed SNGH method compared with the state-of-the-art multimodal hashing methods. The data in many disciplines such as social networks, Web analysis, etc. is link-based, and the link structure can be exploited for many different data mining tasks. In this article, we consider the problem of temporal link prediction: Given link data for times 1 through T, can we predict the links at time T + 1? If our data has underlying periodic structure, can we predict out even further in time, i.e., links at time T + 2, T + 3, etc.? In this article, we consider bipartite graphs that evolve over time and consider matrix- and tensor-based methods for predicting future links. We present a weight-based method for collapsing multiyear data into a single matrix. We show how the well-known Katz method for link prediction can be extended to bipartite graphs and, moreover, approximated in a scalable way using a truncated singular value decomposition. Using a CANDECOMP PARAFAC tensor decomposition of the data, we illustrate the usefulness of exploiting the natural three-dimensional structure of temporal link data. Through several numerical experiments, we demonstrate that both matrix- and tensor-based techniques are effective for temporal link prediction despite the inherent difficulty of the problem. Additionally, we show that tensor-based techniques are particularly effective for temporal data with varying periodic patterns. We present an efficient spectral method for finding consistent correspondences between two sets of features. We build the adjacency matrix M of a graph whose nodes represent the potential correspondences and the weights on the links represent pairwise agreements between potential correspondences. Correct assignments are likely to establish links among each other and thus form a strongly connected cluster. Incorrect correspondences establish links with the other correspondences only accidentally, so they are unlikely to belong to strongly connected clusters. We recover the correct assignments based on how strongly they belong to the main cluster of M, by using the principal eigenvector of M and imposing the mapping constraints required by the overall correspondence mapping (one-to-one or one-to-many). The experimental evaluation shows that our method is robust to outliers, accurate in terms of matching rate, while being much faster than existing methods Domain specific (dis-)similarity or proximity measures used e.g. in alignment algorithms of sequence data are popular to analyze complicated data objects and to cover domain specific data properties. Without an underlying vector space these data are given as pairwise (dis-)similarities only. The few available methods for such data focus widely on similarities and do not scale to large datasets. Kernel methods are very effective for metric similarity matrices, also at large scale, but costly transformations are necessary starting with non-metric (dis-) similarities. We propose an integrative combination of Nystrom approximation, potential double centering and eigenvalue correction to obtain valid kernel matrices at linear costs in the number of samples. By the proposed approach effective kernel approaches become accessible. Experiments with several larger (dis-)similarity datasets show that the proposed method achieves much better runtime performance than the standard strategy while keeping competitive model accuracy. The main contribution is an efficient and accurate technique, to convert (potentially non-metric) large scale dissimilarity matrices into approximated positive semi-definite kernel matrices at linear costs. HighlightsWe propose a linear time and memory efficient approach for converting low rank dissimilarity matrices to similarity matrices and vice versa.Our approach is applicable for proximities obtained from non-metric proximity measures (indefinite kernels, non-standard dissimilarity measures).The presented approach also comprises a generalization of Landmark MDS - the presented approach is in general more accurate and flexible than Landmark MDS.We provide an alternative derivation of the Nystrom approximation together with a convergence proof, also for indefinite kernels not given in the workshop paper as a core element of the approach. Previous experiments with low dimensional data sets have shown that Gabriel graph methods for instance-based learning are among the best machine learning algorithms for pattern classification applications. However, as the dimensionality of the data grows large, all data points in the training set tend to become Gabriel neighbors of each other, bringing the efficacy of this method into question. Indeed, it has been conjectured that for high-dimensional data, proximity graph methods that use sparser graphs, such as relative neighbor graphs (RNG) and minimum spanning trees (MST) would have to be employed in order to maintain their privileged status. Here the performance of proximity graph methods, in instance-based learning, that employ Gabriel graphs, relative neighborhood graphs, and minimum spanning trees, are compared experimentally on high-dimensional data sets. These methods are also compared empirically against the traditional k-NN rule and support vector machines (SVMs), the leading competitors of proximity graph methods. Abstract Similarity networks contain important topological features and patterns critical to understanding interactions among samples in a large dataset. To create a comprehensive view of the interactions within a dataset, the Similarity Network Fusion (SNF) technique has been proposed to fuse the similarity networks based on different data types into one similarity network that represents the full spectrum of underlying data. In this paper, a modified version of SNF, which is named as Contextual Information based SNF (CI-SNF), is proposed. In CI-SNF, first, modified Jaccard distance is performed on the SNF fused similarity to utilize the contextual information contained in the fused similarity network. Second, the local consistency of samples from the same category is enhanced by speculating that the samples which are located high in the Jaccard distance based ranking list of a specific query are from the same category as the query. Third, the inverted index technique is introduced to utilize the sparsity property of the locally consistent similarity network to enhance the computational efficiency. To verify the effectiveness and efficiency of CI-SNF model, it is applied in four different tasks, Cover Song Identification (CSI), image classification, cancer subtype identification, and drug taxonomy, respectively. Extensive experiments on thirteen challenging datasets demonstrate that CI-SNF scheme outperforms state-of-the-art similarity fusion algorithms including SNF in all four tasks. It is also verified that utilizing the contextual information contained in the SNF-based similarity network helps to enhance the performance of the SNF-based scheme, further. In this paper we explore the notion of mobile users' similarity as a key enabler of innovative applications hinging on opportunistic mobile encounters. In particular, we analyze the performance of known similarity metrics, applicable to our problem domain, as well as propose a novel temporal-based metric, in an attempt to quantify the inherently qualitative notion of similarity. Towards this objective, we first introduce generalized profile structures, beyond mere location, that aim to capture users interests and prior experiences, in the form of a probability distribution. Afterwards, we analyze known and proposed similarity metrics for the proposed profile structures using publicly available data. Apart from the classic Cosine similarity, we identify a distance metric from probability theory, namely Hellinger distance, as a strong candidate for quantifying similarity due to the probability distribution structure of the proposed profiles. In addition, we introduce a novel temporal similarity metric, based on matrix vectorization, to capitalize on the richness in the temporal dimension and maintain low complexity. Finally, the numerical results unveil a number of key insights. First, the temporal metrics yield, on the average, lower similarity indices, compared to the non-temporal ones, due to incorporating the dynamics in the temporal dimension. Second, the Hellinger distance holds great promise for quantifying similarity between probability distribution profiles. Third, vectorized metrics constitute a low-complexity approach towards temporal similarity on resource-limited mobile devices.