Many real-world networks are prohibitively large for data retrieval, storage and analysis of all of its nodes and links. Understanding the structure and dynamics of these networks entails creating a smaller representative sample of the full graph while preserving its relevant topological properties. In this report, we show that graph sampling algorithms currently proposed in the literature are not able to preserve network properties even with sample sizes containing as many as 20 of the nodes from the original graph. We present a new sampling algorithm, called Tiny Sample Extractor, with a new goal of a sample size smaller than 5 of the original graph while preserving two key properties of a network, the degree distribution and its clustering co- efficient. Our approach is based on a new empirical method of estimating measurement biases in crawling algorithms and compensating for them accordingly. We present a detailed comparison of best known graph sampling algorithms, focusing in particular on how the properties of the sample subgraphs converge to those of the original graph as they grow. These results show that our sampling algorithm extracts a smaller subgraph than other algorithms while also achieving a closer convergence to the degree distribution, measured by the degree exponent, of the original graph. The subgraph generated by the Tiny Sample Extractor, however, is not necessarily representative of the full graph with regard to other proper ties such as assortativity. This indicates that the problem of extracting a truly representative small subgraph from a large graph remains unsolved.
A more rigorous but different approach to random subgraph sampling has only recently been attempted in @cite_17 which evaluates a number of different strategies including Random Vertex Expansion @cite_0 . However, while the subgraphs sampled in the methods proposed in @cite_17 achieve a sampling of subgraphs uniformly at random, they do not actually extract a single subgraph that is most representative of the full graph with respect to any given property. As a result, random sampling of subgraphs do not readily help us discern properties of the full graph, especially since the sampling of subgraphs uniformly at random leads to an over-representation of properties from dense portions of the graph.
@cite_0 @cite_17
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In order to efficiently study the characteristics of network domains and support development of network systems (e.g. algorithms, protocols that operate on networks), it is often necessary to sample a representative subgraph from a large complex network. Although recent subgraph sampling methods have been shown to work well, they focus on sampling from memory-resident graphs and assume that the sampling algorithm can access the entire graph in order to decide which nodes edges to select. Many large-scale network datasets, however, are too large and or dynamic to be processed using main memory (e.g., email, tweets, wall posts). In this work, we formulate the problem of sampling from large graph streams. We propose a streaming graph sampling algorithm that dynamically maintains a representative sample in a reservoir based setting. We evaluate the efficacy of our proposed methods empirically using several real-world data sets. Across all datasets, we found that our method produce samples that preserve better the original graph distributions. Sampling is a standard approach in big-graph analytics; the goal is to efficiently estimate the graph properties by consulting a sample of the whole population. A perfect sample is assumed to mirror every property of the whole population. Unfortunately, such a perfect sample is hard to collect in complex populations such as graphs (e.g. web graphs, social networks), where an underlying network connects the units of the population. Therefore, a good sample will be representative in the sense that graph properties of interest can be estimated with a known degree of accuracy. While previous work focused particularly on sampling schemes to estimate certain graph properties (e.g. triangle count), much less is known for the case when we need to estimate various graph properties with the same sampling scheme. In this paper, we pro- pose a generic stream sampling framework for big-graph analytics, called Graph Sample and Hold (gSH), which samples from massive graphs sequentially in a single pass, one edge at a time, while maintaining a small state in memory. We use a Horvitz-Thompson construction in conjunction with a scheme that samples arriving edges without adjacencies to previously sampled edges with probability p and holds edges with adjacencies with probability q. Our sample and hold framework facilitates the accurate estimation of subgraph patterns by enabling the dependence of the sampling process to vary based on previous history. Within our framework, we show how to produce statistically unbiased estimators for various graph properties from the sample. Given that the graph analytics will run on a sample instead of the whole population, the runtime complexity is kept under control. Moreover, given that the estimators are unbiased, the approximation error is also kept under control. Finally, we test the performance of the proposed framework (gSH) on various types of graphs, showing that from a sample with -- 40K edges, it produces estimates with relative errors In this paper, we propose an efficient method to detect the underlying structures in data. The same as RANSAC, we randomly sample MSSs (minimal size samples) and generate hypotheses. Instead of analyzing each hypothesis separately, the consensus information in all hypotheses is naturally fused into a hypergraph, called random consensus graph, with real structures corresponding to its dense subgraphs. The sampling process is essentially a progressive refinement procedure of the random consensus graph. Due to the huge number of hyperedges, it is generally inefficient to detect dense subgraphs on random consensus graphs. To overcome this issue, we construct a pairwise graph which approximately retains the dense subgraphs of the random consensus graph. The underlying structures are then revealed by detecting the dense subgraphs of the pair-wise graph. Since our method fuses information from all hypotheses, it can robustly detect structures even under a small number of MSSs. The graph framework enables our method to simultaneously discover multiple structures. Besides, our method is very efficient, and scales well for large scale problems. Extensive experiments illustrate the superiority of our proposed method over previous approaches, achieving several orders of magnitude speedup along with satisfactory accuracy and robustness. We use random sampling as a tool for solving undirected graph problems. We show that the sparse graph, or skeleton, that arises when we randomly sample a graph's edges will accurately approximate the value of all cuts in the original graph with high probability. This makes sampling effective for problems involving cuts in graphs. We present fast randomized (Monte Carlo and Las Vegas) algorithms for approximating and exactly finding minimum cuts and maximum flows in unweighted, undirected graphs. Our cut-approximation algorithms extend unchanged to weighted graphs while our weighted-graph flow algorithms are somewhat slower. Our approach gives a general paradigm with potential applications to any packing problem. It has since been used in a near-linear time algorithm for finding minimum cuts, as well as faster cut and flow algorithms. Our sampling theorems also yield faster algorithms for several other cut-based problems, including approximating the best balanced cut of a graph, finding a k-connected orientation of a 2k-connected graph, and finding integral multicommodity flows in graphs with a great deal of excess capacity. Our methods also improve the efficiency of some parallel cut and flow algorithms. Our methods also apply to the network design problem, where we wish to build a network satisfying certain connectivity requirements between vertices. We can purchase edges of various costs and wish to satisfy the requirements at minimum total cost. Since our sampling theorems apply even when the sampling probabilities are different for different edges, we can apply randomized rounding to solve network design problems. This gives approximation algorithms that guarantee much better approximations than previous algorithms whenever the minimum connectivity requirement is large. As a particular example, we improve the best approximation bound for the minimum k-connected subgraph problem from 1.85 to [math not displayed]. Estimating characteristics of large graphs via sampling is a vital part of the study of complex networks. Current sampling methods such as (independent) random vertex and random walks are useful but have drawbacks. Random vertex sampling may require too many resources (time, bandwidth, or money). Random walks, which normally require fewer resources per sample, can suffer from large estimation errors in the presence of disconnected or loosely connected graphs. In this work we propose a new m-dimensional random walk that uses m dependent random walkers. We show that the proposed sampling method, which we call Frontier sampling, exhibits all of the nice sampling properties of a regular random walk. At the same time, our simulations over large real world graphs show that, in the presence of disconnected or loosely connected components, Frontier sampling exhibits lower estimation errors than regular random walks. We also show that Frontier sampling is more suitable than random vertex sampling to sample the tail of the degree distribution of the graph. A recurrent challenge for modern applications is the processing of large graphs. The ability to generate representative samples of smaller size is useful not only to circumvent scalability issues but also, per se, for statistical analysis and other data mining tasks. For such purposes adequate sampling techniques must be devised. We are interested, in this paper, in the uniform random sampling of a connected subgraph from a graph. We require that the sample contains a prescribed number of vertices. The sampled graph is the corresponding induced graph. We devise, present and discuss several algorithms that leverage three different techniques: Rejection Sampling, Random Walk and Markov Chain Monte Carlo. We empirically evaluate and compare the performance of the algorithms. We show that they are effective and efficient but that there is a trade-off, which depends on the density of the graphs and the sample size. We propose one novel algorithm, which we call Neighbour Reservoir Sampling (NRS), that very successfully realizes the trade-off between effectiveness and efficiency. Considerable attention has been focused on the properties of graphs derived from Internet measurements. Router-level topologies collected via traceroute-like methods have led some to conclude that the router graph of the Internet is well modeled as a power-law random graph. In such a graph, the degree distribution of nodes follows a distribution with a power-law tail. We argue that the evidence to date for this conclusion is at best insufficient We show that when graphs are sampled using traceroute-like methods, the resulting degree distribution can differ sharply from that of the underlying graph. For example, given a sparse Erdos-Renyi random graph, the subgraph formed by a collection of shortest paths from a small set of random sources to a larger set of random destinations can exhibit a degree distribution remarkably like a power-law. We explore the reasons for how this effect arises, and show that in such a setting, edges are sampled in a highly biased manner. This insight allows us to formulate tests for determining when sampling bias is present. When we apply these tests to a number of well-known datasets, we find strong evidence for sampling bias. Despite great effort spent measuring topological features of large networks like the Internet, it was recently argued that sampling based on taking paths through the network (e.g., traceroutes) introduces a fundamental bias in the observed degree distribution. We examine this bias analytically and experimentally. For classic random graphs with mean degree c, we show analytically that traceroute sampling gives an observed degree distribution P(k) 1 k for k < c, even though the underlying degree distribution is Poisson. For graphs whose degree distributions have power-law tails P(k) k^-alpha, the accuracy of traceroute sampling is highly sensitive to the population of low-degree vertices. In particular, when the graph has a large excess (i.e., many more edges than vertices), traceroute sampling can significantly misestimate alpha. †§ ¶ Most studies of networks have only looked at small subsets of the true network. Here, we discuss the sampling properties of a network’s degree distribution under the most parsimonious sampling scheme. Only if the degree distributions of the network and randomly sampled subnets belong to the same family of probability distributions is it possible to extrapolate from subnet data to properties of the global network. We show that this condition is indeed satisfied for some important classes of networks, notably classical random graphs and exponential random graphs. For scale-free degree distributions, however, this is not the case. Thus, inferences about the scale-free nature of a network may have to be treated with some caution. The work presented here has important implications for the analysis of molecular networks as well as for graph theory and the theory of networks in general. complex networks protein interaction networks random graphs sampling theory Mapping the Internet generally consists in sampling the network from a limited set of sources by using "traceroute"-like probes. This methodology, akin to the merging of different spanning trees to a set of destinations, has been argued to introduce uncontrolled sampling biases that might produce statistical properties of the sampled graph which sharply differ from the original ones. Here we explore these biases and provide a statistical analysis of their origin. We derive a mean-field analytical approximation for the probability of edge and vertex detection that exploits the role of the number of sources and targets and allows us to relate the global topological properties of the underlying network with the statistical accuracy of the sampled graph. In particular we find that the edge and vertex detection probability is depending on the betweenness centrality of each element. This allows us to show that shortest path routed sampling provides a better characterization of underlying graphs with scale-free topology. We complement the analytical discussion with a throughout numerical investigation of simulated mapping strategies in different network models. We show that sampled graphs provide a fair qualitative characterization of the statistical properties of the original networks in a fair range of different strategies and exploration parameters. The numerical study also allows the identification of intervals of the exploration parameters that optimize the fraction of nodes and edges discovered in the sampled graph. This finding might hint the steps toward more efficient mapping strategies. Recent interest in graph pattern mining has shifted from finding all frequent subgraphs to obtaining a small subset of frequent subgraphs that are representative, discriminative or significant. The main motivation behind that is to cope with the scalability problem that the graph mining algorithms suffer when mining databases of large graphs. Another motivation is to obtain a succinct output set that is informative and useful. In the same spirit, researchers also proposed sampling based algorithms that sample the output space of the frequent patterns to obtain representative subgraphs. In this work, we propose a generic sampling framework that is based on Metropolis-Hastings algorithm to sample the output space of frequent subgraphs. Our experiments on various sampling strategies show the versatility, utility and efficiency of the proposed sampling approach. We discuss two sampling schemes for selecting random subnets from a network, random sampling and connectivity dependent sampling, and investigate how the degree distribution of a node in the network is affected by the two types of sampling. Here we derive a necessary and sufficient condition that guarantees that the degree distributions of the subnet and the true network belong to the same family of probability distributions. For completely random sampling of nodes we find that this condition is satisfied by classical random graphs; for the vast majority of networks this condition will, however, not be met. We furthermore discuss the case where the probability of sampling a node depends on the degree of a node and we find that even classical random graphs are no longer closed under this sampling regime. We conclude by relating the results to real Eschericia coli protein interaction network data. Given a huge real graph, how can we derive a representative sample? There are many known algorithms to compute interesting measures (shortest paths, centrality, betweenness, etc.), but several of them become impractical for large graphs. Thus graph sampling is essential.The natural questions to ask are (a) which sampling method to use, (b) how small can the sample size be, and (c) how to scale up the measurements of the sample (e.g., the diameter), to get estimates for the large graph. The deeper, underlying question is subtle: how do we measure success?.We answer the above questions, and test our answers by thorough experiments on several, diverse datasets, spanning thousands nodes and edges. We consider several sampling methods, propose novel methods to check the goodness of sampling, and develop a set of scaling laws that describe relations between the properties of the original and the sample.In addition to the theoretical contributions, the practical conclusions from our work are: Sampling strategies based on edge selection do not perform well; simple uniform random node selection performs surprisingly well. Overall, best performing methods are the ones based on random-walks and "forest fire"; they match very accurately both static as well as evolutionary graph patterns, with sample sizes down to about 15 of the original graph. We consider the task of topology discovery of sparse random graphs using end-to-end random measurements (e.g., delay) between a subset of nodes, referred to as the participants. The rest of the nodes are hidden, and do not provide any information for topology discovery. We consider topology discovery under two routing models: (a) the participants exchange messages along the shortest paths and obtain end-to-end measurements, and (b) additionally, the participants exchange messages along the second shortest path. For scenario (a), our proposed algorithm results in a sub-linear edit-distance guarantee using a sub-linear number of uniformly selected participants. For scenario (b), we obtain a much stronger result, and show that we can achieve consistent reconstruction when a sub-linear number of uniformly selected nodes participate. This implies that accurate discovery of sparse random graphs is tractable using an extremely small number of participants. We finally obtain a lower bound on the number of participants required by any algorithm to reconstruct the original random graph up to a given edit distance. We also demonstrate that while consistent discovery is tractable for sparse random graphs using a small number of participants, in general, there are graphs which cannot be discovered by any algorithm even with a significant number of participants, and with the availability of end-to-end information along all the paths between the participants. © 2012 Wiley Periodicals, Inc. Random Struct. Alg., 2013 Sampling is a standard approach in big-graph analytics; the goal is to efficiently estimate the graph properties by consulting a sample of the whole population. A perfect sample is assumed to mirror every property of the whole population. Unfortunately, such a perfect sample is hard to collect in complex populations such as graphs (e.g. web graphs, social networks etc), where an underlying network connects the units of the population. Therefore, a good sample will be representative in the sense that graph properties of interest can be estimated with a known degree of accuracy. While previous work focused particularly on sampling schemes used to estimate certain graph properties (e.g. triangle count), much less is known for the case when we need to estimate various graph properties with the same sampling scheme. In this paper, we propose a generic stream sampling framework for big-graph analytics, called Graph Sample and Hold (gSH). To begin, the proposed framework samples from massive graphs sequentially in a single pass, one edge at a time, while maintaining a small state. We then show how to produce unbiased estimators for various graph properties from the sample. Given that the graph analysis algorithms will run on a sample instead of the whole population, the runtime complexity of these algorithm is kept under control. Moreover, given that the estimators of graph properties are unbiased, the approximation error is kept under control. Finally, we show the performance of the proposed framework (gSH) on various types of graphs, such as social graphs, among others. Counting the frequency of small subgraphs is a fundamental technique in network analysis across various domains, most notably in bioinformatics and social networks. The special case of triangle counting has received much attention. Getting results for 4-vertex patterns is highly challenging, and there are few practical results known that can scale to massive sizes. Indeed, even a highly tuned enumeration code takes more than a day on a graph with millions of edges. Most previous work that runs for truly massive graphs employ clusters and massive parallelization. We provide a sampling algorithm that provably and accurately approximates the frequencies of all 4-vertex pattern subgraphs. Our algorithm is based on a novel technique of 3-path sampling and a special pruning scheme to decrease the variance in estimates. We provide theoretical proofs for the accuracy of our algorithm, and give formal bounds for the error and confidence of our estimates. We perform a detailed empirical study and show that our algorithm provides estimates within 1 relative error for all subpatterns (over a large class of test graphs), while being orders of magnitude faster than enumeration and other sampling based algorithms. Our algorithm takes less than a minute (on a single commodity machine) to process an Orkut social network with 300 million edges. State-of-the-art techniques for probability sampling of users of online social networks (OSNs) are based on random walks on a single social relation (typically friendship). While powerful, these methods rely on the social graph being fully connected. Furthermore, the mixing time of the sampling process strongly depends on the characteristics of this graph. In this paper, we observe that there often exist other relations between OSN users, such as membership in the same group or participation in the same event. We propose to exploit the graphs these relations induce, by performing a random walk on their union multigraph. We design a computationally efficient way to perform multigraph sampling by randomly selecting the graph on which to walk at each iteration. We demonstrate the benefits of our approach through (i) simulation in synthetic graphs, and (ii) measurements of Last.fm- an Internet website for music with social networking features. More specifically, we show that multigraph sampling can obtain a representative sample and faster convergence, even when the individual graphs fail, i.e., are disconnected or highly clustered. We propose a novel method, based on concepts from expander graphs, to sample communities in networks. We show that our sampling method, unlike previous techniques, produces subgraphs representative of community structure in the original network. These generated subgraphs may be viewed as stratified samples in that they consist of members from most or all communities in the network. Using samples produced by our method, we show that the problem of community detection may be recast into a case of statistical relational learning. We empirically evaluate our approach against several real-world datasets and demonstrate that our sampling method can effectively be used to infer and approximate community affiliation in the larger network. Sampling from large graphs is an area of great interest, especially since the emergence of huge structures such as Online Social Networks (OSNs) and the World Wide Web (WWW). These networks, when viewed as graphs, often contain hundreds of millions of vertices and billions of edges. The large scale properties of a network can be summarized in terms of parameters of the underlying graph, such as the total number of vertices, edges and triangles. The large size of these networks makes it computationally expensive to obtain such structural properties of the underlying graph by exhaustive search. If we can estimate these properties by taking small but representative samples from the network, then size is no longer such a problem. In this paper we present a general framework to estimate network properties using random walks. These methods work under the assumption we are able to obtain local characteristics of a vertex during each step of the random walk, for example the number and labels of the neighboring vertices of a specific vertex These assumptions are relatively reasonable in practice, but may add some additional query cost to each step of the random walk. We also present some practical methods to estimate the total number of edges links m, number of vertices nodes n and number of connected triads of vertices (triangles) t in graphs with degree distributions which follow a power-law and higher number of triangles higher than expected in random graphs. We use these graphs since they tend to better correspond to the structure of large online networks, and in fact some of the data used are taken from such a network. Additionally we present experimental estimates for n, m, t we obtained using our methods on real or manufactured networks. In order to make the methods practical, the total number of steps made by the walk was limited to at most the size n of the network. In fact the results appear to converge for a lower number of steps, indicating that our proposed methods are feasible in practice. This paper builds theoretical foundations for the recovery of a newly proposed class of smooth graph signals, approximately bandlimited graph signals, under three sampling strategies: uniform sampling, experimentally designed sampling, and active sampling. We then state minimax lower bounds on the maximum risk for the approximately bandlimited class under these three sampling strategies and show that active sampling cannot fundamentally outperform experimentally designed sampling. We propose a recovery strategy to compare uniform sampling with experimentally designed sampling. As the proposed recovery strategy lends itself well to statistical analysis, we derive the exact mean square error for each sampling strategy. To study convergence rates, we introduce two types of graphs and find that 1) the proposed recovery strategy achieves the optimal rates; and 2) the experimentally designed sampling fundamentally outperforms uniform sampling for Type-2 class of graphs. To validate our proposed recovery strategy, we test it on five specific graphs: a ring graph with @math nearest neighbors, an Erdős–Renyi graph, a random geometric graph, a small-world graph, and a power-law graph and find that experimental results match the proposed theory well. This paper also presents a comprehensive explanation for when and why sampling for semi-supervised learning with graphs works.