The emergence of high-dimensional data in various areas has brought new challenges to the ensemble clustering research. To deal with the curse of dimensionality, considerable efforts in ensemble clustering have been made by incorporating various subspace-based techniques. Besides the emphasis on subspaces, rather limited attention has been paid to the potential diversity in similarity dissimilarity metrics. It remains a surprisingly open problem in ensemble clustering how to create and aggregate a large number of diversified metrics, and furthermore, how to jointly exploit the multi-level diversity in the large number of metrics, subspaces, and clusters, in a unified framework. To tackle this problem, this paper proposes a novel multi-diversified ensemble clustering approach. In particular, we create a large number of diversified metrics by randomizing a scaled exponential similarity kernel, which are then coupled with random subspaces to form a large set of metric-subspace pairs. Based on the similarity matrices derived from these metric-subspace pairs, an ensemble of diversified base clusterings can thereby be constructed. Further, an entropy-based criterion is adopted to explore the cluster-wise diversity in ensembles, based on which the consensus function is therefore presented. Experimental results on twenty high-dimensional datasets have confirmed the superiority of our approach over the state-of-the-art.
The graph partitioning based methods @cite_39 @cite_11 @cite_19 generally construct a graph model for the ensemble of multiple base clusterings, and then partition the graph into several disjoint subsets to obtain the final clustering result. Strehl and Ghosh @cite_11 solved the ensemble clustering problem by using three graph partitioning based algorithms, namely, cluster-based similarity partitioning algorithm (CSPA), hypergraph partitioning algorithm (HGPA), and meta-clustering algorithm (MCLA). Fern and Brodley @cite_19 formulated a bipartite graph model by treating both clusters and data samples as nodes, and partitioned the graph by the METIS algorithm @cite_24 to obtain the consensus result. @cite_39 dealt with the ensemble clustering problem by sparse graph representation and random walk trajectory analysis, and presented the probability trajectory based graph partitioning (PTGP) method.
@cite_24 @cite_19 @cite_11 @cite_39
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This paper considers the problem of clustering large data sets in a high-dimensional space. Using a random forest, we first generate multiple partitions of the same input space, one per tree. The partitions from all trees are merged by intersecting them, resulting in a partition of higher resolution. A graph is then constructed by assigning a node to each region and linking adjacent nodes. This Graph of Superimposed Partitions (GSP) represents a remapped space of the input data where regions of high density are mapped to a larger number of nodes. Generating such a graph turns the clustering problem in the feature space into a graph clustering task which we solve with the Markov cluster algorithm (MCL). The proposed algorithm is able to capture non-convex structure while being computationally efficient, capable of dealing with large data sets. We show the clustering performance on synthetic data and apply the method to the task of video segmentation. We prove that any graph excluding Kr as a minor has can be partitioned into clusters of diameter at most Δ while removing at most O(r Δ) fraction of the edges. This improves over the results of Fakcharoenphol and Talwar, who building on the work of Klein, Plotkin and Rao gave a partitioning that required to remove O(r2 Δ) fraction of the edges. Our result is obtained by a new approach that relates the topological properties (excluding a minor) of a graph to its geometric properties (the induced shortest path metric). Specifically, we show that techniques used by Andreae in his investigation of the cops and robbers game on graphs excluding a fixed minor, can be used to construct padded decompositions of the metrics induced by such graphs. In particular, we get probabilistic partitions with padding parameter O(r) and strong-diameter partitions with padding parameter O(r2) for Kr-free graphs, O(k) for treewidth-k graphs, and O(log g) for graphs with genus g. A novel graph theoretic approach for data clustering is presented and its application to the image segmentation problem is demonstrated. The data to be clustered are represented by an undirected adjacency graph G with arc capacities assigned to reflect the similarity between the linked vertices. Clustering is achieved by removing arcs of G to form mutually exclusive subgraphs such that the largest inter-subgraph maximum flow is minimized. For graphs of moderate size ( approximately 2000 vertices), the optimal solution is obtained through partitioning a flow and cut equivalent tree of G, which can be efficiently constructed using the Gomory-Hu algorithm (1961). However for larger graphs this approach is impractical. New theorems for subgraph condensation are derived and are then used to develop a fast algorithm which hierarchically constructs and partitions a partially equivalent tree of much reduced size. This algorithm results in an optimal solution equivalent to that obtained by partitioning the complete equivalent tree and is able to handle very large graphs with several hundred thousand vertices. The new clustering algorithm is applied to the image segmentation problem. The segmentation is achieved by effectively searching for closed contours of edge elements (equivalent to minimum cuts in G), which consist mostly of strong edges, while rejecting contours containing isolated strong edges. This method is able to accurately locate region boundaries and at the same time guarantees the formation of closed edge contours. > In this work, we show the deficiencies of the graph model for decomposing sparse matrices for parallel matrix-vector multiplication. Then, we propose two hypergraph models which avoid all deficiencies of the graph model. The proposed models reduce the decomposition problem to the well-known hypergraph partitioning problem widely encountered in circuit partitioning in VLSI. We have implemented fast Kernighan-Lin based graph and hypergraph partitioning heuristics and used the successful multilevel graph partitioning tool (Metis) for the experimental evaluation of the validity of the proposed hypergraph models. We have also developed a multilevel hypergraph partitioning heuristic for experimenting the performance of the multilevel approach on hypergraph partitioning. Experimental results on sparse matrices, selected from Harwell-Boeing collection and NETLIB suite, confirm both the validity of our proposed hypergraph models and appropriateness of the multilevel approach to hypergraph partitioning. In this paper, we examine a spectral clustering algorithm for similarity graphs drawn from a simple random graph model, where nodes are allowed to have varying degrees, and we provide theoretical bounds on its performance. The random graph model we study is the Extended Planted Partition (EPP) model, a variant of the classical planted partition model. The standard approach to spectral clustering of graphs is to compute the bottom k singular vectors or eigenvectors of a suitable graph Laplacian, project the nodes of the graph onto these vectors, and then use an iterative clustering algorithm on the projected nodes. However a challenge with applying this approach to graphs generated from the EPP model is that unnormalized Laplacians do not work, and normalized Laplacians do not concentrate well when the graph has a number of low degree nodes. We resolve this issue by introducing the notion of a degree-corrected graph Laplacian. For graphs with many low degree nodes, degree correction has a regularizing eect on the Laplacian. Our spectral clustering algorithm projects the nodes in the graph onto the bottom k right singular vectors of the degree-corrected random-walk Laplacian, and clusters the nodes in this subspace. We show guarantees on the performance of this algorithm, demonstrating that it outputs the correct partition under a wide range of parameter values. Unlike some previous work, our algorithm does not require access to any generative parameters of the model. Graph partitioning requires the division of a graph's vertex set into k equally sized subsets s.t. some objective function is optimized. High-quality partitions are important for many applications, whose objective functions are often NP-hard to optimize. Most state-of-the-art graph partitioning libraries use a variant of the Kernighan-Lin (KL) heuristic within a multilevel framework. While these libraries are very fast, their solutions do not always meet all user requirements. Moreover, due to its sequential nature, KL is not easy to parallelize. Its use as a load balancer in parallel numerical applications therefore requires complicated adaptations. That is why we developed previously an inherently parallel algorithm, called Bubble-FOS C [H. Meyerhenke, B. Monien, S. Schamberger, Accelerating shape optimizing load balancing for parallel FEM simulations by algebraic multigrid, in: Proceedings of the 20th IEEE International Parallel and Distributed Processing Symposium, IPDPS'06, IEEE Computer Society, 2006, p. 57 (CD)], which optimizes partition shapes by a diffusive mechanism. However, it is too slow for practical use, despite its high solution quality. In this paper, besides proving that Bubble-FOS C converges towards a local optimum of a potential function, we develop a much faster method for the improvement of partitionings. This faster method called TruncCons is based on a different diffusive process, which is restricted to local areas of the graph and also contains a high degree of parallelism. By coupling TruncCons with Bubble-FOS C in a multilevel framework based on two different hierarchy construction methods, we obtain our new graph partitioning heuristic DibaP. Compared to Bubble-FOS C, DibaP shows a considerable acceleration, while retaining the positive properties of the slower algorithm. Experiments with popular benchmark graphs show that DibaP computes consistently better results than the state-of-the-art libraries METIS and JOSTLE. Moreover, with our new algorithm, we have improved the best known edge-cut values for a significant number of partitionings of six widely used benchmark graphs. A critical problem in cluster ensemble research is how to combine multiple clusterings to yield a final superior clustering result. Leveraging advanced graph partitioning techniques, we solve this problem by reducing it to a graph partitioning problem. We introduce a new reduction method that constructs a bipartite graph from a given cluster ensemble. The resulting graph models both instances and clusters of the ensemble simultaneously as vertices in the graph. Our approach retains all of the information provided by a given ensemble, allowing the similarity among instances and the similarity among clusters to be considered collectively in forming the final clustering. Further, the resulting graph partitioning problem can be solved efficiently. We empirically evaluate the proposed approach against two commonly used graph formulations and show that it is more robust and achieves comparable or better performance in comparison to its competitors. The availability of larger and larger graph datasets, growing exponentially over the years, has created several new algorithmic challenges to be addressed. Sequential approaches have become unfeasible, while interest on parallel and distributed algorithms has greatly increased. Appropriately partitioning the graph as a preprocessing step can improve the degree of parallelism of its analysis. A number of heuristic algorithms have been developed to solve this problem, but many of them subdivide the graph on its vertex set, thus obtaining a vertex-partitioned graph. Aim of this paper is to explore a completely different approach based on edge partitioning, in which edges, rather than vertices, are partitioned into disjoint subsets. Contribution of this paper is twofold: first, we introduce a graph processing framework based on edge partitioning, that is flexible enough to be applied to several different graph problems. Second, we show the feasibility of these ideas by presenting a distributed edge partitioning algorithm called d-fep. Our framework is thoroughly evaluated, using both simulations and an Hadoop implementation running on the Amazon EC2 cloud. The experiments show that d-fep is efficient, scalable and obtains consistently good partitions. The resulting edge-partitioned graph can be exploited to obtain more efficient implementations of graph analysis algorithms. We prove tight upper bounds on the logarithmic derivative of the independence and matching polynomials of d-regular graphs. For independent sets, this theorem is a strengthening of Kahn's result that a disjoint union of copies of Kd;d maximizes the number of independent sets of a bipartite d-regular graph, Galvin and Tet ali's result that the independence polynomial is maximized by the same, and Zhao's extension of both results to all d-regular graphs. For matchings, this shows that the matching polynomial and the total number of matchings of a d-regular graph are maximized by a union of copies of Kd;d. Using this we prove the asymptotic upper matching conjecture of Friedland, Krop, Lundow, and Markstrom. In probabilistic language, our main theorems state that for all d-regular graphs and all �, the occupancy fraction of the hard-core model and the edge occupancy fraction of the monomer-dimer model with fugacity � are maximized by Kd;d. Our method involves constrained optimization problems over distributions of random variables and applies to all d-regular graphs directly, without a reduction to the bipartite case. Using a variant of the method we prove a lower bound on the occupancy fraction of the hard-core model on any d-regular, vertex-transitive, bipartite graph: the occupancy fraction of such a graph is strictly greater than the occupancy fraction of the unique translationinvariant hard-core measure on the infinite d-regular tree A prominent tool in many problems involving metric spaces is a notion of randomized low-diameter decomposition. Loosely speaking, ( )-decomposition refers to a probability distribution over partitions of the metric into sets of low diameter, such that nearby points (parameterized by ( >0 )) are likely to be “clustered” together. Applying this notion to the shortest-path metric in edge-weighted graphs, it is known that n-vertex graphs admit an (O( n) )-padded decomposition (Bartal, 37th annual symposium on foundations of computer science. IEEE, pp 184–193, 1996), and that excluded-minor graphs admit O(1)-padded decomposition (, 25th annual ACM symposium on theory of computing, pp 682–690, 1993; Fakcharoenphol and Talwar, J Comput Syst Sci 69(3), 485–497, 2004; , Proceedings of the 46th annual ACM symposium on theory of computing. STOC ’14, pp 79–88. ACM, New York, NY, USA, 2014). We design decompositions to the family of p-path-separable graphs, which was defined by Abraham and Gavoille (Proceedings of the twenty-fifth annual acm symposium on principles of distributed computing, PODC ’06, pp 188–197, 2006) and refers to graphs that admit vertex-separators consisting of at most p shortest paths in the graph. Our main result is that every p-path-separable n-vertex graph admits an (O( (p n)) )-decomposition, which refines the (O( n) ) bound for general graphs, and provides new bounds for families like bounded-treewidth graphs. Technically, our clustering process differs from previous ones by working in (the shortest-path metric of) carefully chosen subgraphs. One standard solution for analyzing large natural graphs is to adopt distributed computation on clusters. In distributed computation, graph partitioning (GP) methods assign the vertices or edges of a graph to different machines in a balanced way so that some distributed algorithms can be adapted for. Most of traditional GP methods are offline, which means that the whole graph has been observed before partitioning. However, the offline methods often incur high computation cost. Hence, streaming graph partitioning (SGP) methods, which can partition graphs in an online way, have recently attracted great attention in distributed computation. There exist two typical GP strategies: edge-cut and vertex-cut. Most SGP methods adopt edge-cut, but few vertex-cut methods have been proposed for SGP. However, the vertex-cut strategy would be a better choice than the edge-cut strategy because the degree of a natural graph in general follows a highly skewed power-law distribution. Thus, we propose a novel method, called S-PowerGraph, for SGP of natural graphs by vertex-cut. Our S-PowerGraph method is simple but effective. Experiments on several large natural graphs and synthetic graphs show that our S-PowerGraph can outperform the state-of-the-art baselines. In this work, we show that the standard graph-partitioning-based decomposition of sparse matrices does not reflect the actual communication volume requirement for parallel matrix-vector multiplication. We propose two computational hypergraph models which avoid this crucial deficiency of the graph model. The proposed models reduce the decomposition problem to the well-known hypergraph partitioning problem. The recently proposed successful multilevel framework is exploited to develop a multilevel hypergraph partitioning tool PaToH for the experimental verification of our proposed hypergraph models. Experimental results on a wide range of realistic sparse test matrices confirm the validity of the proposed hypergraph models. In the decomposition of the test matrices, the hypergraph models using PaToH and hMeTiS result in up to 63 percent less communication volume (30 to 38 percent less on the average) than the graph model using MeTiS, while PaToH is only 1.3-2.3 times slower than MeTiS on the average. Distributed graph processing platforms have helped emerging application domains use commodity clusters and Clouds to analyze large graphs. Vertex-centric programming models like Google Pregel, and their subgraph-centric variants, specify data-parallel application logic for a single vertex or component that execute iteratively. The locality and balancing of components within partitions affects the performance of such platforms. We propose three partitioning strategies for a subgraph-centric model, and analyze their impact on CPU utilization, communication, iterations, and makespan. We analyze these using Breadth First Search and PageRank algorithms on powerlaw and spatio-planar graphs. They are validated on a commodity cluster using our GoFFish subgraph-centric platform, and compared against Apache Giraph vertex-centric platform. Our experiments show upto 8 times improvement in utilization resulting to upto 5 times improvement of overall makespan for flat and hierarchical partitioning over the default strategy due to improved machine utilization. Further, these also exhibit better horizontal scalability relative to Giraph. In this paper we present a parallel formulation of the multilevel graph partitioning and sparse matrix ordering algorithm. A key feature of our parallel formulation (that distinguishes it from other proposed parallel formulations of multilevel algorithms) is that it partitions the vertices of the graph intopparts while distributing the overall adjacency matrix of the graph among allpprocessors. This mapping results in substantially smaller communication than one-dimensional distribution for graphs with relatively high degree, especially if the graph is randomly distributed among the processors. We also present a parallel algorithm for computing a minimal cover of a bipartite graph which is a key operation for obtaining a small vertex separator that is useful for computing the fill reducing ordering of sparse matrices. Our parallel algorithm achieves a speedup of up to 56 on 128 processors for moderate size problems, further reducing the already moderate serial run time of multilevel schemes. Furthermore, the quality of the produced partitions and orderings are comparable to those produced by the serial multilevel algorithm that has been shown to outperform both spectral partitioning and multiple minimum degree. Although many successful ensemble clustering approaches have been developed in recent years, there are still two limitations to most of the existing approaches. First, they mostly overlook the issue of uncertain links, which may mislead the overall consensus process. Second, they generally lack the ability to incorporate global information to refine the local links. To address these two limitations, in this paper, we propose a novel ensemble clustering approach based on sparse graph representation and probability trajectory analysis. In particular, we present the elite neighbor selection strategy to identify the uncertain links by locally adaptive thresholds and build a sparse graph with a small number of probably reliable links. We argue that a small number of probably reliable links can lead to significantly better consensus results than using all graph links regardless of their reliability. The random walk process driven by a new transition probability matrix is utilized to explore the global information in the graph. We derive a novel and dense similarity measure from the sparse graph by analyzing the probability trajectories of the random walkers, based on which two consensus functions are further proposed. Experimental results on multiple real-world datasets demonstrate the effectiveness and efficiency of our approach. The graph partitioning problem is to divide the vertices of a graph into disjoint clusters to minimize the total cost of the edges cut by the clusters. A spectral partitioning heuristic uses the graph's eigenvectors to construct a geometric representation of the graph (e.g., linear orderings) which are subsequently partitioned. Our main result shows that when all the eigenvectors are used, graph partitioning reduces to a new vector partitioning problem. This result implies that as many eigenvectors as are practically possible should be used to construct a solution. This philosophy is in contrast to that of the widely used spectral bipartitioning (SB) heuristic (which uses only a single eigenvector) and several previous multi-way partitioning heuristics [8, 11, 17, 27, 38] (which use k eigenvectors to construct k-way partitionings). Our result motivates a simple ordering heuristic that is a multiple-eigenvector extension of SB. This heuristic not only significantly outperforms recursive SB, but can also yield excellent multi-way VLSI circuit partitionings as compared to [1, 11]. Our experiments suggest that the vector partitioning perspective opens the door to new and effective partitioning heuristics. The present paper updates and improves a preliminary version of this work [5]. Graph partitioning is one of the most studied NP-complete problems. Given a graph G=(V, E) , the task is to partition the vertex set V into k disjoint subsets of about the same size, such that the number of edges with endpoints in different subsets is minimized. In this paper, we present a highly effective multilevel memetic algorithm, which integrates a new multiparent crossover operator and a powerful perturbation-based tabu search algorithm. The proposed crossover operator tends to preserve the backbone with respect to a certain number of parent individuals, i.e., the grouping of vertices which is common to all parent individuals. Extensive experimental studies on numerous benchmark instances from the graph partitioning archive show that the proposed approach, within a time limit ranging from several minutes to several hours, performs far better than any of the existing graph partitioning algorithms in terms of solution quality. Given an arc-weighted directed graph G = (V, A, spl lscr ) and a pair of nodes s, t, we seek to find an s-t walk of length at most B that maximizes some given function f of the set of nodes visited by the walk. The simplest case is when we seek to maximize the number of nodes visited: this is called the orienteering problem. Our main result is a quasi-polynomial time algorithm that yields an O(log OPT) approximation for this problem when f is a given submodular set function. We then extend it to the case when a node v is counted as visited only if the walk reaches v in its time window [R(v), D(v)]. We apply the algorithm to obtain several new results. First, we obtain an O(log OPT) approximation for a generalization of the orienteering problem in which the profit for visiting each node may vary arbitrarily with time. This captures the time window problem considered earlier for which, even in undirected graphs, the best approximation ratio known [Bansal, (2004)] is O(log sup 2 OPT). The second application is an O(log sup 2 k) approximation for the k-TSP problem in directed graphs (satisfying asymmetric triangle inequality). This is the first non-trivial approximation algorithm for this problem. The third application is an O(log sup 2 k) approximation (in quasi-poly time) for the group Steiner problem in undirected graphs where k is the number of groups. This improves earlier ratios (Garg, ) by a logarithmic factor and almost matches the inapproximability threshold on trees (Halperin and Krauthgamer, 2003). This connection to group Steiner trees also enables us to prove that the problem we consider is hard to approximate to a ratio better than spl Omega (log sup 1- spl epsi OPT), even in undirected graphs. Even though our algorithm runs in quasi-poly time, we believe that the implications for the approximability of several basic optimization problems are interesting. Clustering ensembles have emerged as a powerful method for improving both the robustness and the stability of unsupervised classification solutions. However, finding a consensus clustering from multiple partitions is a difficult problem that can be approached from graph-based, combinatorial or statistical perspectives. We offer a probabilistic model of consensus using a finite mixture of multinomial distributions in a space of clustering. A combined partition is found as a solution to the corresponding maximum likelihood problem using the GA algorithm. The excellent scalability of this algorithm and comprehensible underlying model are particularly important for clustering of large datasets. This study includes two sections, at the first, calculate correlation matrix. this matrix show correlation between samples and we found the best samples that can be in the center of clusters. In the other section a genetic algorithm is employed to produce the most stable partitions from an evolving ensemble (population) of clustering algorithms along with a special objective function. The objective function evaluates multiple partitions according to changes caused by data perturbations and prefers those clustering that are least susceptible to those perturbations. We present a novel algorithm for agglomerative hierarchical clustering based on evaluating marginal likelihoods of a probabilistic model. This algorithm has several advantages over traditional distance-based agglomerative clustering algorithms. (1) It defines a probabilistic model of the data which can be used to compute the predictive distribution of a test point and the probability of it belonging to any of the existing clusters in the tree. (2) It uses a model-based criterion to decide on merging clusters rather than an ad-hoc distance metric. (3) Bayesian hypothesis testing is used to decide which merges are advantageous and to output the recommended depth of the tree. (4) The algorithm can be interpreted as a novel fast bottom-up approximate inference method for a Dirichlet process (i.e. countably infinite) mixture model (DPM). It provides a new lower bound on the marginal likelihood of a DPM by summing over exponentially many clusterings of the data in polynomial time. We describe procedures for learning the model hyperpa-rameters, computing the predictive distribution, and extensions to the algorithm. Experimental results on synthetic and real-world data sets demonstrate useful properties of the algorithm.