New applications of data mining, such as in biology, bioinformatics, or sociology, are faced with large datasets structured as graphs. We introduce a novel class of tree-shaped patterns called tree queries, and present algorithms for mining tree queries and tree-query associations in a large data graph. Novel about our class of patterns is that they can contain constants, and can contain existential nodes which are not counted when determining the number of occurrences of the pattern in the data graph. Our algorithms have a number of provable optimality properties, which are based on the theory of conjunctive database queries. We propose a practical, database-oriented implementation in SQL, and show that the approach works in practice through experiments on data about food webs, protein interactions, and citation analysis.
Cook and Holder @cite_6 apply in their SUBDUE system the minimum description length (MDL) principle to discover substructures in a labeled data graph. The MDL principle states that the best pattern, is that pattern that minimizes the description length of the complete data graph. Hence, in SUBDUE a pattern is evaluated on how well it can compress the entire dataset. The input for the SUBDUE system is a labeled data graph; nodes and edges are labeled with non-unique labels. This is in contrast with the unique labels ( constants') in our system. But as we already noted, non-unique node labels and edge-labels can easily be simulated by constants, but the converse is not obvious. The SUBDUE system only mines patterns, no association rules.
@cite_6
2274829541 2124996875 2150045644 2101460669
Recent sequential pattern mining methods have used the minimum description length (MDL) principle to define an encoding scheme which describes an algorithm for mining the most compressing patterns in a database. We present a novel subsequence interleaving model based on a probabilistic model of the sequence database, which allows us to search for the most compressing set of patterns without designing a specific encoding scheme. Our proposed algorithm is able to efficiently mine the most relevant sequential patterns and rank them using an associated measure of interestingness. The efficient inference in our model is a direct result of our use of a structural expectation-maximization framework, in which the expectation-step takes the form of a submodular optimization problem subject to a coverage constraint. We show on both synthetic and real world datasets that our model mines a set of sequential patterns with low spuriousness and redundancy, high interpretability and usefulness in real-world applications. Furthermore, we demonstrate that the quality of the patterns from our approach is comparable to, if not better than, existing state of the art sequential pattern mining algorithms. The ability to identify interesting and repetitive substructures is an essential component to discovering knowledge in structural data. We describe a new version of our SUBDUE substructure discovery system based on the minimum description length principle. The SUBDUE system discovers substructures that compress the original data and represent structural concepts in the data. By replacing previously-discovered substructures in the data, multiple passes of SUBDUE produce a hierarchical description of the structural regularities in the data. SUBDUE uses a computationally-bounded inexact graph match that identifies similar, but not identical, instances of a substructure and finds an approximate measure of closeness of two substructures when under computational constraints. In addition to the minimumdescription length principle, other background knowledge can be used by SUBDUE to guide the search towards more appropriate substructures. Experiments in a variety of domains demonstrate SUBDUE's ability to find substructures capable of compressing the original data and to discover structural concepts important to the domain. Discovering contrasts between collections of data is an important task in data mining. In this paper, we introduce a new type of contrast pattern, called a minimal distinguishing subsequence (MDS). An MDS is a minimal subsequence that occurs frequently in one class of sequences and infrequently in sequences of another class. It is a natural way of representing strong and succinct contrast information between two sequential datasets and can be useful in applications such as protein comparison, document comparison and building sequential classification models. Mining MDS patterns is a challenging task and is significantly different from mining contrasts between relational transactional data. One particularly important type of constraint that can be integrated into the mining process is the maximum gap constraint. We present an efficient algorithm called ConSGapMiner, to mine all MDSs according to a maximum gap constraint. It employs highly efficient bitset and Boolean operations, for powerful gap based pruning within a prefix growth framework. A performance evaluation with both sparse and dense datasets, demonstrates the scalability of ConSGapMiner and shows its ability to mine patterns from high dimensional datasets at low supports. The minimum description length (MDL) principle is a powerful method of inductive inference, the basis of statistical modeling, pattern recognition, and machine learning. It holds that the best explanation, given a limited set of observed data, is the one that permits the greatest compression of the data. MDL methods are particularly well-suited for dealing with model selection, prediction, and estimation problems in situations where the models under consideration can be arbitrarily complex, and overfitting the data is a serious concern. This extensive, step-by-step introduction to the MDL Principle provides a comprehensive reference (with an emphasis on conceptual issues) that is accessible to graduate students and researchers in statistics, pattern classification, machine learning, and data mining, to philosophers interested in the foundations of statistics, and to researchers in other applied sciences that involve model selection, including biology, econometrics, and experimental psychology. Part I provides a basic introduction to MDL and an overview of the concepts in statistics and information theory needed to understand MDL. Part II treats universal coding, the information-theoretic notion on which MDL is built, and part III gives a formal treatment of MDL theory as a theory of inductive inference based on universal coding. Part IV provides a comprehensive overview of the statistical theory of exponential families with an emphasis on their information-theoretic properties. The text includes a number of summaries, paragraphs offering the reader a "fast track" through the material, and boxes highlighting the most important concepts.