In the last years, automated segmentation has become a necessary tool for volume electron microscopy (EM) imaging. So far, the best performing techniques have been largely based on fully supervised encoder-decoder CNNs, requiring a substantial amount of annotated images. Domain Adaptation (DA) aims to alleviate the annotation burden by ‘adapting’ the networks trained on existing groundtruth data (source domain) to work on a different (target) domain with as little additional annotation as possible. Most DA research is focused on the classification task, whereas volume EM segmentation remains rather unexplored. In this work, we extend recently proposed classification DA techniques to an encoder-decoder layout and propose a novel method that adds a reconstruction decoder to the classical encoder-decoder segmentation in order to align source and target encoder features. The method has been validated on the task of segmenting mitochondria in EM volumes. We have performed DA from brain EM images to HeLa cells and from isotropic FIB SEM volumes to anisotropic TEM volumes. In all cases, the proposed method has outperformed the extended classification DA techniques and the finetuning baseline. An implementation of our work can be found on https: github.com JorisRoels domain-adaptive-segmentation.
The first sentence is redundant, you say this in the paragraph above and in the intro already. I would start this paragraph with the second sentence 'The first DA method...' The first DA method for semantic segmentation was proposed in @cite_3 . It is based on classical CNN feature extractors where the last feature layer is aligned using an adversarial loss. The recent work of @cite_8 also employs domain confusion for alignment, but additionally normalizes the visual appearance of source and target data. Alternatively, the work of @cite_6 proposes shared decoders combined with MMD regularization on the final decoder activations.
@cite_6 @cite_3 @cite_8
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The topic of semantic segmentation has witnessed considerable progress due to the powerful features learned by convolutional neural networks (CNNs) [13]. The current leading approaches for semantic segmentation exploit shape information by extracting CNN features from masked image regions. This strategy introduces artificial boundaries on the images and may impact the quality of the extracted features. Besides, the operations on the raw image domain require to compute thousands of networks on a single image, which is time-consuming. In this paper, we propose to exploit shape information via masking convolutional features. The proposal segments (e.g., super-pixels) are treated as masks on the convolutional feature maps. The CNN features of segments are directly masked out from these maps and used to train classifiers for recognition. We further propose a joint method to handle objects and “stuff” (e.g., grass, sky, water) in the same framework. State-of-the-art results are demonstrated on benchmarks of PASCAL VOC and new PASCAL-CONTEXT, with a compelling computational speed. We present a two-module approach to semantic segmentation that incorporates Convolutional Networks (CNNs) and Graphical Models. Graphical models are used to generate a small (5-30) set of diverse segmentations proposals, such that this set has high recall. Since the number of required proposals is so low, we can extract fairly complex features to rank them. Our complex feature of choice is a novel CNN called SegNet, which directly outputs a (coarse) semantic segmentation. Importantly, SegNet is specifically trained to optimize the corpus-level PASCAL IOU loss function. To the best of our knowledge, this is the first CNN specifically designed for semantic segmentation. This two-module approach achieves @math on the PASCAL 2012 segmentation challenge. Harvesting dense pixel-level annotations to train deep neural networks for semantic segmentation is extremely expensive and unwieldy at scale. While learning from synthetic data where labels are readily available sounds promising, performance degrades significantly when testing on novel realistic data due to domain discrepancies. We present Dual Channel-wise Alignment Networks (DCAN), a simple yet effective approach to reduce domain shift at both pixel-level and feature-level. Exploring statistics in each channel of CNN feature maps, our framework performs channel-wise feature alignment, which preserves spatial structures and semantic information, in both an image generator and a segmentation network. In particular, given an image from the source domain and unlabeled samples from the target domain, the generator synthesizes new images on-the-fly to resemble samples from the target domain in appearance and the segmentation network further refines high-level features before predicting semantic maps, both of which leverage feature statistics of sampled images from the target domain. Unlike much recent and concurrent work relying on adversarial training, our framework is lightweight and easy to train. Extensive experiments on adapting models trained on synthetic segmentation benchmarks to real urban scenes demonstrate the effectiveness of the proposed framework. Most existing methods of semantic segmentation still suffer from two aspects of challenges: intra-class inconsistency and inter-class indistinction. To tackle these two problems, we propose a Discriminative Feature Network (DFN), which contains two sub-networks: Smooth Network and Border Network. Specifically, to handle the intra-class inconsistency problem, we specially design a Smooth Network with Channel Attention Block and global average pooling to select the more discriminative features. Furthermore, we propose a Border Network to make the bilateral features of boundary distinguishable with deep semantic boundary supervision. Based on our proposed DFN, we achieve state-of-the-art performance 86.2 mean IOU on PASCAL VOC 2012 and 80.3 mean IOU on Cityscapes dataset.