Multiple clustering aims at discovering diverse ways of organizing data into clusters. Despite the progress made, it's still a challenge for users to analyze and understand the distinctive structure of each output clustering. To ease this process, we consider diverse clusterings embedded in different subspaces, and analyze the embedding subspaces to shed light into the structure of each clustering. To this end, we provide a two-stage approach called MISC (Multiple Independent Subspace Clusterings). In the first stage, MISC uses independent subspace analysis to seek multiple and statistical independent (i.e. non-redundant) subspaces, and determines the number of subspaces via the minimum description length principle. In the second stage, to account for the intrinsic geometric structure of samples embedded in each subspace, MISC performs graph regularized semi-nonnegative matrix factorization to explore clusters. It additionally integrates the kernel trick into matrix factorization to handle non-linearly separable clusters. Experimental results on synthetic datasets show that MISC can find different interesting clusterings from the sought independent subspaces, and it also outperforms other related and competitive approaches on real-world datasets.
COALA (Constrained Orthogonal Average Link Algorithm) @cite_29 is the classic algorithm that controls redundancy through clustering labels. It transforms linked pairs of the reference clustering into cannot-link constraints, and then uses agglomerative clustering to find an alternative clustering. MNMF (Multiple clustering by Nonnegative Matrix Factorization) @cite_19 derives a diversity regularization term from the labels of existing clusterings, and then integrates this term with the objective function of NMF to seek another clustering. The performance of both COALA and MNMF heavily depends on the quality of already discovered clusterings. To alleviate this issue, other methods simultaneously seek multiple clusterings by minimizing the correlation between the labels of two distinct clusterings and by optimizing the quality of each clustering @cite_9 @cite_18 . For example, De- @math means (Decorrelated @math -means) @cite_9 simultaneously learns two disparate clusterings by minimizing a @math -means sum squared error objective for the two clustering solutions, and by minimizing the correlation between the two clusterings. CAMI (Clustering for Alternatives with Mutual Information) @cite_5 optimizes a dual-objective function, in which the log-likelihood objective (accounting for the quality) is maximized, while the mutual information objective (accounting for the dissimilarity) of pairwise clusterings is minimized.
@cite_18 @cite_29 @cite_9 @cite_19 @cite_5
2128859735 2256361316 2022712430 2107857731
We present a new method for clustering based on compression. The method does not use subject-specific features or background knowledge, and works as follows: First, we determine a parameter-free, universal, similarity distance, the normalized compression distance or NCD, computed from the lengths of compressed data files (singly and in pairwise concatenation). Second, we apply a hierarchical clustering method. The NCD is not restricted to a specific application area, and works across application area boundaries. A theoretical precursor, the normalized information distance, co-developed by one of the authors, is provably optimal. However, the optimality comes at the price of using the noncomputable notion of Kolmogorov complexity. We propose axioms to capture the real-world setting, and show that the NCD approximates optimality. To extract a hierarchy of clusters from the distance matrix, we determine a dendrogram (ternary tree) by a new quartet method and a fast heuristic to implement it. The method is implemented and available as public software, and is robust under choice of different compressors. To substantiate our claims of universality and robustness, we report evidence of successful application in areas as diverse as genomics, virology, languages, literature, music, handwritten digits, astronomy, and combinations of objects from completely different domains, using statistical, dictionary, and block sorting compressors. In genomics, we presented new evidence for major questions in Mammalian evolution, based on whole-mitochondrial genomic analysis: the Eutherian orders and the Marsupionta hypothesis against the Theria hypothesis. Based on spectral graph theory, spectral clustering is an optimal graph partition problem. It has been proven that the spectral clustering is equivalent to nonnegative matrix factorization (NMF) under certain conditions. Based on the equivalence, some spectral clustering methods are proposed, but the global discriminative information of the dataset is neglected. In this paper, based on the equivalence between spectral clustering and NMF, we simultaneously maximize the between-class scatter matrix and minimize the within-class scatter matrix to enhance the discriminating power. We integrate the geometrical structure and discriminative structure in a joint framework. With a global discriminative regularization term added into the nonnegative matrix factorization framework, we propose two novel spectral clustering methods, named global discriminative-based nonnegative and spectral clustering (GDBNSC-Ncut and GDBNSC-Rcut) These new spectral clustering algorithms can preserve both the global geometrical structure and global discriminative structure. The intrinsic geometrical information of the dataset is detected, and clustering quality is improved with enhanced discriminating power. In addition, the proposed algorithms also have very good abilities of handling out-of-sample data. Experimental results on real word data demonstrate that the proposed algorithms outperform some state-of-the-art methods with good clustering qualities. We maximize the between-class scatter matrix.Meanwhile, we minimize the within-class scatter matrix.We integrate the geometrical structure and discriminative structure in a framework.A global discriminative regularization term added into the objective functions.The new algorithms can preserve the global geometrical and discriminative structure. Nonnegative Matrix Factorization (NMF) is an effective dimension reduction method for non-negative dyadic data, and has proven to be useful in many areas, such as text mining, bioinformatics and image processing. NMF is usually formulated as a constrained non-convex optimization problem, and many algorithms have been developed for solving it. Recently, a coordinate descent method, called FastHals, has been proposed to solve least squares NMF and is regarded as one of the state-of-the-art techniques for the problem. In this paper, we first show that FastHals has an inefficiency in that it uses a cyclic coordinate descent scheme and thus, performs unneeded descent steps on unimportant variables. We then present a variable selection scheme that uses the gradient of the objective function to arrive at a new coordinate descent method. Our new method is considerably faster in practice and we show that it has theoretical convergence guarantees. Moreover when the solution is sparse, as is often the case in real applications, our new method benefits by selecting important variables to update more often, thus resulting in higher speed. As an example, on a text dataset RCV1, our method is 7 times faster than FastHals, and more than 15 times faster when the sparsity is increased by adding an L1 penalty. We also develop new coordinate descent methods when error in NMF is measured by KL-divergence by applying the Newton method to solve the one-variable sub-problems. Experiments indicate that our algorithm for minimizing the KL-divergence is faster than the Lee & Seung multiplicative rule by a factor of 10 on the CBCL image dataset. We present new high performance numerical kernels combined with advanced optimization techniques that significantly increase the performance of parallel bidiagonal reduction. Our approach is based on developing efficient fine-grained computational tasks as well as reducing overheads associated with their high-level scheduling during the so-called bulge chasing procedure that is an essential phase of a scalable bidiagonalization procedure. In essence, we coalesce multiple tasks in a way that reduces the time needed to switch execution context between the scheduler and useful computational tasks. At the same time, we maintain the crucial information about the tasks and their data dependencies between the coalescing groups. This is the necessary condition to preserve numerical correctness of the computation. We show our annihilation strategy based on multiple applications of single orthogonal reflectors. Despite non-trivial characteristics in computational complexity and memory access patterns, our optimization approach smoothly applies to the annihilation scenario. The coalescing positively influences another equally important aspect of the bulge chasing stage: the memory reuse. For the tasks within the coalescing groups, the data is retained in high levels of the cache hierarchy and, as a consequence, operations that are normally memory-bound increase their ratio of computation to off-chip communication and become compute-bound which renders them amenable to efficient execution on multicore architectures. The performance for the new two-stage bidiagonal reduction is staggering. Our implementation results in up to 50-fold and 12-fold improvement ( 130 Gflop s) compared to the equivalent routines from LAPACK V3.2 and Intel MKL V10.3, respectively, on an eight socket hexa-core AMD Opteron multicore shared-memory system with a matrix size of 24000 &#x00D7; 24000. Last but not least, we provide a comprehensive study on the impact of the coalescing group size in terms of cache utilization and power consumption in the context of this new two-stage bidiagonal reduction.