Embedding network data into a low-dimensional vector space has shown promising performance for many real-world applications, such as node classification and entity retrieval. However, most existing methods focused only on leveraging network structure. For social networks, besides the network structure, there also exists rich information about social actors, such as user profiles of friendship networks and textual content of citation networks. These rich attribute information of social actors reveal the homophily effect, exerting huge impacts on the formation of social networks. In this paper, we explore the rich evidence source of attributes in social networks to improve network embedding. We propose a generic Social Network Embedding framework (SNE), which learns representations for social actors (i.e., nodes) by preserving both the structural proximity and attribute proximity. While the structural proximity captures the global network structure, the attribute proximity accounts for the homophily effect. To justify our proposal, we conduct extensive experiments on four real-world social networks. Compared to the state-of-the-art network embedding approaches, SNE can learn more informative representations, achieving substantial gains on the tasks of link prediction and node classification. Specifically, SNE significantly outperforms node2vec with an 8.2 relative improvement on the link prediction task, and a 12.7 gain on the node classification task.
Some earlier works such as Local Linear Embedding (LLE) @cite_2 , IsoMAP @cite_12 and Laplacian Eigenmap @cite_25 first transform data into an affinity graph based on the feature vectors of nodes ( e.g., k-nearest neighbors of nodes) and then embed the graph by solving the leading eigenvectors of the affinity matrix.
@cite_25 @cite_12 @cite_2
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This paper introduces the SpecLoc algorithm that performs clustering without pre-assigning the number of clusters. This is achieved by the use of a special property of matrix eigenvectors, called weak localization. The signless Laplacian matrix is created on the basis of a mutual neighbor graph. A new measure, introduced in this work, allows for selection of weakly localized eigenvectors. Experiments confirm good performance of the proposed algorithm for weakly separated groups of real datasets, including cancer gene expression matrices. We present a method combining affinity prediction with region agglomeration, which improves significantly upon the state of the art of neuron segmentation from electron microscopy (EM) in accuracy and scalability. Our method consists of a 3D U-Net, trained to predict affinities between voxels, followed by iterative region agglomeration. We train using a structured loss based on Malis, encouraging topologically correct segmentations obtained from affinity thresholding. Our extension consists of two parts: First, we present a quasi-linear method to compute the loss gradient, improving over the original quadratic algorithm. Second, we compute the gradient in two separate passes to avoid spurious gradient contributions in early training stages. Our predictions are accurate enough that simple learning-free percentile-based agglomeration outperforms more involved methods used earlier on inferior predictions. We present results on three diverse EM datasets, achieving relative improvements over previous results of 27, 15, and 250 percent. Our findings suggest that a single method can be applied to both nearly isotropic block-face EM data and anisotropic serial sectioned EM data. The runtime of our method scales linearly with the size of the volume and achieves a throughput of @math ∼ 2.6 seconds per megavoxel, qualifying our method for the processing of very large datasets. The smallest eigenvalues and the associated eigenvectors (i.e., eigenpairs) of a graph Laplacian matrix have been widely used for spectral clustering and community detection. However, in real-life applications, the number of clusters or communities (say, K) is generally unknown a priori. Consequently, the majority of the existing methods either choose K heuristically or they repeat the clustering method with different choices of K and accept the best clustering result. The first option, more often, yields suboptimal result, while the second option is computationally expensive. In this work, we propose an incremental method for constructing the eigenspectrum of the graph Laplacian matrix. This method leverages the eigenstructure of graph Laplacian matrix to obtain the Kth smallest eigenpair of the Laplacian matrix given a collection of all previously computed (K-1 ) smallest eigenpairs. Our proposed method adapts the Laplacian matrix such that the batch eigenvalue decomposition problem transforms into an efficient sequential leading eigenpair computation problem. As a practical application, we consider user-guided spectral clustering. Specifically, we demonstrate that users can utilize the proposed incremental method for effective eigenpair computation and for determining the desired number of clusters based on multiple clustering metrics. In this paper we propose an inexact spectral matching algorithm that embeds large graphs on a low-dimensional isometric space spanned by a set of eigenvectors of the graph Laplacian. Given two sets of eigenvectors that correspond to the smallest non-null eigenvalues of the Laplacian matrices of two graphs, we project each graph onto its eigenenvectors. We estimate the histograms of these one-dimensional graph projections (eigenvector histograms) and we show that these histograms are well suited for selecting a subset of significant eigenvectors, for ordering them, for solving the sign-ambiguity of eigenvector computation, and for aligning two embeddings. This results in an inexact graph matching solution that can be improved using a rigid point registration algorithm. We apply the proposed methodology to match surfaces represented by meshes.