The majority of medical documents and electronic health records are in text format that poses a challenge for data processing and finding relevant documents. Looking for ways to automatically retrieve the enormous amount of health and medical knowledge has always been an intriguing topic. Powerful methods have been developed in recent years to make the text processing automatic. One of the popular approaches to retrieve information based on discovering the themes in health and medical corpora is topic modeling; however, this approach still needs new perspectives. In this research, we describe fuzzy latent semantic analysis (FLSA), a novel approach in topic modeling using fuzzy perspective. FLSA can handle health and medical corpora redundancy issue and provides a new method to estimate the number of topics. The quantitative evaluations show that FLSA produces superior performance and features to latent Dirichlet allocation, the most popular topic model.
Topic modeling defines each topic as probability distribution over words and a document as probability distribution over topics. In health and medical text mining, latent Dirichlet allocation (LDA) shows better performance than other topic models @cite_37 .
@cite_37
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Topic Model such as Latent Dirichlet Allocation(LDA) makes assumption that topic assignment of different words are conditionally independent. In this paper, we propose a new model Extended Global Topic Random Field (EGTRF) to model non-linear dependencies between words. Specifically, we parse sentences into dependency trees and represent them as a graph, and assume the topic assignment of a word is influenced by its adjacent words and distance-2 words. Word similarity information learned from large corpus is incorporated to enhance word topic assignment. Parameters are estimated efficiently by variational inference and experimental results on two datasets show EGTRF achieves lower perplexity and higher log predictive probability. Latent Dirichlet Allocation (LDA) mining thematic structure of documents plays an important role in nature language processing and machine learning areas. However, the probability distribution from LDA only describes the statistical relationship of occurrences in the corpus and usually in practice, probability is not the best choice for feature representations. Recently, embedding methods have been proposed to represent words and documents by learning essential concepts and representations, such as Word2Vec and Doc2Vec. The embedded representations have shown more effectiveness than LDA-style representations in many tasks. In this paper, we propose the Topic2Vec approach which can learn topic representations in the same semantic vector space with words, as an alternative to probability. The experimental results show that Topic2Vec achieves interesting and meaningful results. We describe latent Dirichlet allocation (LDA), a generative probabilistic model for collections of discrete data such as text corpora. LDA is a three-level hierarchical Bayesian model, in which each item of a collection is modeled as a finite mixture over an underlying set of topics. Each topic is, in turn, modeled as an infinite mixture over an underlying set of topic probabilities. In the context of text modeling, the topic probabilities provide an explicit representation of a document. We present efficient approximate inference techniques based on variational methods and an EM algorithm for empirical Bayes parameter estimation. We report results in document modeling, text classification, and collaborative filtering, comparing to a mixture of unigrams model and the probabilistic LSI model. Topic models, such as latent Dirichlet allocation (LDA), can be useful tools for the statistical analysis of document collections and other discrete data. The LDA model assumes that the words of each document arise from a mixture of topics, each of which is a distribution over the vocabulary. A limitation of LDA is the inability to model topic correlation even though, for example, a document about genetics is more likely to also be about disease than X-ray astronomy. This limitation stems from the use of the Dirichlet distribution to model the variability among the topic proportions. In this paper we develop the correlated topic model (CTM), where the topic proportions exhibit correlation via the logistic normal distribution [J. Roy. Statist. Soc. Ser. B 44 (1982) 139--177]. We derive a fast variational inference algorithm for approximate posterior inference in this model, which is complicated by the fact that the logistic normal is not conjugate to the multinomial. We apply the CTM to the articles from Science published from 1990--1999, a data set that comprises 57M words. The CTM gives a better fit of the data than LDA, and we demonstrate its use as an exploratory tool of large document collections.