The Nystr " o m method is routinely used for out-of-sample extension of kernel matrices. We describe how this method can be applied to find the singular value decomposition (SVD) of general matrices and the eigenvalue decomposition (EVD) of square matrices. We take as an input a matrix @math , a user defined integer @math and @math , a matrix sampled from the columns and rows of @math . These are used to construct an approximate rank- @math SVD of @math in @math operations. If @math is square, the rank- @math EVD can be similarly constructed in @math operations. Thus, the matrix @math is a compressed version of @math . We discuss the choice of @math and propose an algorithm that selects a good initial sample for a pivoted version of @math . The proposed algorithm performs well for general matrices and kernel matrices whose spectra exhibit fast decay.
The Cholesky decomposition of a matrix factors it into @math , where @math is an upper triangular matrix. Initially, @math . The ICD algorithm applies the Cholesky decomposition to @math while symmetrically pivoting the columns and rows of @math according to a greedy criterion. The algorithm has an outer loop that scans the columns of @math according to a pivoting order. The results for each column determine the next column to scan. This loop is terminated early after @math columns were scanned by using a heuristic on the trace of the residual @math . This algorithm ( @cite_31 ) approximates @math . This is equivalent to a Nystr " o m approximation where the initial sample is taken as the intersection of the pivoted columns and rows.
@cite_31
1554201860 2127144731 1998269045 2094542090
Given a matrix A e ℝ m ×n of rank r, and an integer k < r, the top k singular vectors provide the best rank-k approximation to A. When the columns of A have specific meaning, it is desirable to find (provably) "good" approximations to A k which use only a small number of columns in A. Proposed solutions to this problem have thus far focused on randomized algorithms. Our main result is a simple greedy deterministic algorithm with guarantees on the performance and the number of columns chosen. Specifically, our greedy algorithm chooses c columns from A with @math such that @math where C gr is the matrix composed of the c columns, @math is the pseudo-inverse of C gr ( @math is the best reconstruction of A from C gr), and ¼(A) is a measure of the coherence in the normalized columns of A. The running time of the algorithm is O(SVD(A k) + mnc) where SVD(A k) is the running time complexity of computing the first k singular vectors of A. To the best of our knowledge, this is the first deterministic algorithm with performance guarantees on the number of columns and a (1 + e) approximation ratio in Frobenius norm. The algorithm is quite simple and intuitive and is obtained by combining a generalization of the well known sparse approximation problem from information theory with an existence result on the possibility of sparse approximation. Tightening the analysis along either of these two dimensions would yield improved results. In this paper, we describe scalable parallel algorithms for symmetric sparse matrix factorization, analyze their performance and scalability, and present experimental results for up to 1,024 processors on a Gray T3D parallel computer. Through our analysis and experimental results, we demonstrate that our algorithms substantially improve the state of the art in parallel direct solution of sparse linear systems-both in terms of scalability and overall performance. It is a well known fact that dense matrix factorization scales well and can be implemented efficiently on parallel computers. In this paper, we present the first algorithms to factor a wide class of sparse matrices (including those arising from two- and three-dimensional finite element problems) that are asymptotically as scalable as dense matrix factorization algorithms on a variety of parallel architectures. Our algorithms incur less communication overhead and are more scalable than any previously known parallel formulation of sparse matrix factorization. Although, in this paper, we discuss Cholesky factorization of symmetric positive definite matrices, the algorithms can be adapted for solving sparse linear least squares problems and for Gaussian elimination of diagonally dominant matrices that are almost symmetric in structure. An implementation of one of our sparse Cholesky factorization algorithms delivers up to 20 GFlops on a Gray T3D for medium-size structural engineering and linear programming problems. To the best of our knowledge, this is the highest performance ever obtained for sparse Cholesky factorization on any supercomputer. Many data analysis applications deal with large matrices and involve approximating the matrix using a small number of “components.” Typically, these components are linear combinations of the rows and columns of the matrix, and are thus difficult to interpret in terms of the original features of the input data. In this paper, we propose and study matrix approximations that are explicitly expressed in terms of a small number of columns and or rows of the data matrix, and thereby more amenable to interpretation in terms of the original data. Our main algorithmic results are two randomized algorithms which take as input an @math matrix @math and a rank parameter @math . In our first algorithm, @math is chosen, and we let @math , where @math is the Moore-Penrose generalized inverse of @math . In our second algorithm @math , @math , @math are chosen, and we let @math . ( @math and @math are matrices that consist of actual columns and rows, respectively, of @math , and @math is a generalized inverse of their intersection.) For each algorithm, we show that with probability at least @math , @math , where @math is the “best” rank- @math approximation provided by truncating the SVD of @math , and where @math is the Frobenius norm of the matrix @math . The number of columns of @math and rows of @math is a low-degree polynomial in @math , @math , and @math . Both the Numerical Linear Algebra community and the Theoretical Computer Science community have studied variants of these matrix decompositions over the last ten years. However, our two algorithms are the first polynomial time algorithms for such low-rank matrix approximations that come with relative-error guarantees; previously, in some cases, it was not even known whether such matrix decompositions exist. Both of our algorithms are simple and they take time of the order needed to approximately compute the top @math singular vectors of @math . The technical crux of our analysis is a novel, intuitive sampling method we introduce in this paper called “subspace sampling.” In subspace sampling, the sampling probabilities depend on the Euclidean norms of the rows of the top singular vectors. This allows us to obtain provable relative-error guarantees by deconvoluting “subspace” information and “size-of- @math ” information in the input matrix. This technique is likely to be useful for other matrix approximation and data analysis problems. This paper presents a parallel sparse Cholesky factorization algorithm for shared-memory MIMD multiprocessors. The algorithm is particularly well suited for vector supercomputers with multiple processors, such as the Cray Y-MP. The new algorithm is a straightforward parallelization of the left-looking supernodal sparse Cholesky factorization algorithm. Like its sequential predecessor, it improves performance by reducing indirect addressing and memory traffic. Experimental results on a Cray Y-MP demonstrate the effectiveness of the new algorithm. On eight processors of a Cray Y-MP, the new routine performs the factorization at rates exceeding one Gflop for several test problems from the Harwell–Boeing sparse matrix collection.