This paper presents two approaches to quantifying and visualizing variation in datasets of trees. The first approach localizes subtrees in which significant population differences are found through hypothesis testing and sparse classifiers on subtree features. The second approach visualizes the global metric structure of datasets through low-distortion embedding into hyperbolic planes in the style of multidimensional scaling. A case study is made on a dataset of airway trees in relation to Chronic Obstructive Pulmonary Disease.
While a large body of work has been done on classifying structured data, less is known about how to identify which parts of a structure are relevant for the classification problem. Most such work has been done in settings where there is a correspondence between the parts constituting the data object: In analysis of brain connectivity @cite_26 @cite_23 , one usually has a matching between the nodes in the dataset, while in voxel-based morphometry @cite_30 or shape analysis @cite_18 , registration is used to match different images to a template. A popular approach to such problems is @cite_20 @cite_26 @cite_33 , which detects discriminative substructures in data described by fixed-length Euclidean vectors with a known underlying structure relating the vector coordinates. However, anatomical trees usually cannot be described by fixed-length vectors without discarding parts of the tree. Thus, these methods are not directly applicable.
@cite_30 @cite_18 @cite_26 @cite_33 @cite_23 @cite_20
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We explore a new approach to shape recognition based on a virtually infinite family of binary features (queries) of the image data, designed to accommodate prior information about shape invariance and regularity. Each query corresponds to a spatial arrangement of several local topographic codes (or tags), which are in themselves too primitive and common to be informative about shape. All the discriminating power derives from relative angles and distances among the tags. The important attributes of the queries are a natural partial ordering corresponding to increasing structure and complexity; semi-invariance, meaning that most shapes of a given class will answer the same way to two queries that are successive in the ordering; and stability, since the queries are not based on distinguished points and substructures. No classifier based on the full feature set can be evaluated, and it is impossible to determine a priori which arrangements are informative. Our approach is to select informative features and build tree classifiers at the same time by inductive learning. In effect, each tree provides an approximation to the full posterior where the features chosen depend on the branch that is traversed. Due to the number and nature of the queries, standard decision tree construction based on a fixed-length feature vector is not feasible. Instead we entertain only a small random sample of queries at each node, constrain their complexity to increase with tree depth, and grow multiple trees. The terminal nodes are labeled by estimates of the corresponding posterior distribution over shape classes. An image is classified by sending it down every tree and aggregating the resulting distributions. The method is applied to classifying handwritten digits and synthetic linear and nonlinear deformations of three hundred L AT E X symbols. Stateof-the-art error rates are achieved on the National Institute of Standards and Technology database of digits. The principal goal of the experiments on L AT E X symbols is to analyze invariance, generalization error and related issues, and a comparison with artificial neural networks methods is presented in this context. We present a tree-structured network architecture for large-scale image classification. The trunk of the network contains convolutional layers optimized over all classes. At a given depth, the trunk splits into separate branches, each dedicated to discriminate a different subset of classes. Each branch acts as an expert classifying a set of categories that are difficult to tell apart, while the trunk provides common knowledge to all experts in the form of shared features. The training of our “network of experts” is completely end-to-end: the partition of categories into disjoint subsets is learned simultaneously with the parameters of the network trunk and the experts are trained jointly by minimizing a single learning objective over all classes. The proposed structure can be built from any existing convolutional neural network (CNN). We demonstrate its generality by adapting 4 popular CNNs for image categorization into the form of networks of experts. Our experiments on CIFAR100 and ImageNet show that in every case our method yields a substantial improvement in accuracy over the base CNN, and gives the best result achieved so far on CIFAR100. Finally, the improvement in accuracy comes at little additional cost: compared to the base network, the training time is only moderately increased and the number of parameters is comparable or in some cases even lower. We present a tree-structured network architecture for large scale image classification. The trunk of the network contains convolutional layers optimized over all classes. At a given depth, the trunk splits into separate branches, each dedicated to discriminate a different subset of classes. Each branch acts as an expert classifying a set of categories that are difficult to tell apart, while the trunk provides common knowledge to all experts in the form of shared features. The training of our "network of experts" is completely end-to-end: the partition of categories into disjoint subsets is learned simultaneously with the parameters of the network trunk and the experts are trained jointly by minimizing a single learning objective over all classes. The proposed structure can be built from any existing convolutional neural network (CNN). We demonstrate its generality by adapting 4 popular CNNs for image categorization into the form of networks of experts. Our experiments on CIFAR100 and ImageNet show that in every case our method yields a substantial improvement in accuracy over the base CNN, and gives the best result achieved so far on CIFAR100. Finally, the improvement in accuracy comes at little additional cost: compared to the base network, the training time is only moderately increased and the number of parameters is comparable or in some cases even lower. We introduce a novel neural network architecture for encoding and synthesis of 3D shapes, particularly their structures. Our key insight is that 3D shapes are effectively characterized by their hierarchical organization of parts, which reflects fundamental intra-shape relationships such as adjacency and symmetry. We develop a recursive neural net (RvNN) based autoencoder to map a flat, unlabeled, arbitrary part layout to a compact code. The code effectively captures hierarchical structures of man-made 3D objects of varying structural complexities despite being fixed-dimensional: an associated decoder maps a code back to a full hierarchy. The learned bidirectional mapping is further tuned using an adversarial setup to yield a generative model of plausible structures, from which novel structures can be sampled. Finally, our structure synthesis framework is augmented by a second trained module that produces fine-grained part geometry, conditioned on global and local structural context, leading to a full generative pipeline for 3D shapes. We demonstrate that without supervision, our network learns meaningful structural hierarchies adhering to perceptual grouping principles, produces compact codes which enable applications such as shape classification and partial matching, and supports shape synthesis and interpolation with significant variations in topology and geometry.