In this paper, we present COCI, the OpenCitations Index of Crossref open DOI-to-DOI citations (this http URL). COCI is the first open citation index created by OpenCitations, in which we have applied the concept of citations as first-class data entities, and it contains more than 445 million DOI-to-DOI citation links derived from the data available in Crossref. These citations are described in RDF by means of the newly extended version of the OpenCitations Data Model (OCDM). We introduce the workflow we have developed for creating these data, and also show the additional services that facilitate the access to and querying of these data via different access points: a SPARQL endpoint, a REST API, bulk downloads, Web interfaces, and direct access to the citations via HTTP content negotiation. Finally, we present statistics regarding the use of COCI citation data, and we introduce several projects that have already started to use COCI data for different purposes.
Finally, Semantic Lancet @cite_14 proposes to build a dataset of scholarly publication metadata and citations (including the specification of the citation functions) starting from articles published by Elsevier. To date it includes bibliographic metadata, abstract and citations of 291 articles published in the Journal of Web Semantics.
@cite_14
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In this poster we introduce the Semantic Lancet Project, whose goal is to make available rich data about scholarly publications and to provide users with sophisticated services on top of those data. Representing the semantics of unstructured scientific publications will certainly facilitate access and search and hopefully lead to new discoveries. However, current digital libraries are usually limited to classic flat structured metadata even for scientific publications that potentially contain rich semantic metadata. In addition, how to search the scientific literature of linked semantic metadata is an open problem. We have developed a semantic digital library oreChem ChemxSeer that models chemistry papers with semantic metadata. It stores and indexes extracted metadata from a chemistry paper repository Chemx Seer using "compound objects". We use the Open Archives Initiative Object Reuse and Exchange (OAI-ORE) (http: www.openarchives.org ore standard to define a compound object that aggregates metadata fields related to a digital object. Aggregated metadata can be managed and retrieved easily as one unit resulting in improved ease-of-use and has the potential to improve the semantic interpretation of shared data. We show how metadata can be extracted from documents and aggregated using OAI-ORE. ORE objects are created on demand; thus, we are able to search for a set of linked metadata with one query. We were also able to model new types of metadata easily. For example, chemists are especially interested in finding information related to experiments in documents. We show how paragraphs containing experiment information in chemistry papers can be extracted and tagged based on a chemistry ontology with 470 classes, and then represented in ORE along with other document-related metadata. Our algorithm uses a classifier with features that are words that are typically only used to describe experiments, such as "apparatus", "prepare", etc. Using a dataset comprised of documents from the Royal Society of Chemistry digital library, we show that the our proposed methodperforms well in extracting experiment-related paragraphs from chemistry documents. This paper presents the analysis and modelling of two data sets associated with the literature of hypertext as represented by the ACM Hypertext conference series. This work explores new ways of organising and accessing the vast amount of interrelated information. The first data set, including all the full papers published in this series (1987 1998), is structured and visualised as a semantic space. This semantic space provides an access point for each paper in this collection. The second data set, containing author co-citation counts based on nine conferences in the series (1989 1998), is analysed and mapped in its entirety and in three evenly distributed sub-periods. Specialties  major research fronts in the field of hypertext  are identified based on the results of a factor analysis and corresponding author co-citation maps. The names of authors in these maps are linked to the bibliographical and citation summaries of these authors on the WWW. Motivation: Medical Subject Headings (MeSH) indexing, which is to assign a set of MeSH main headings to citations, is crucial for many important tasks in biomedical text mining and information retrieval. Large-scale MeSH indexing has two challenging aspects: the citation side and MeSH side. For the citation side, all existing methods, including Medical Text Indexer (MTI) by National Library of Medicine and the state-of-the-art method, MeSHLabeler, deal with text by bag-of-words, which cannot capture semantic and context-dependent information well. Methods: We propose DeepMeSH that incorporates deep semantic information for large-scale MeSH indexing. It addresses the two challenges in both citation and MeSH sides. The citation side challenge is solved by a new deep semantic representation, D2V-TFIDF, which concatenates both sparse and dense semantic representations. The MeSH side challenge is solved by using the ‘learning to rank’ framework of MeSHLabeler, which integrates various types of evidence generated from the new semantic representation. Results: DeepMeSH achieved a Micro F-measure of 0.6323, 2 higher than 0.6218 of MeSHLabeler and 12 higher than 0.5637 of MTI, for BioASQ3 challenge data with 6000 citations. Availability and Implementation: The software is available upon request. Contact: nc.ude.naduf@fsuhz Supplementary information: Supplementary data are available at Bioinformatics online.