Abstract This article presents our steps to integrate complex and partly unstructured medical data into a clinical research database with subsequent decision support. Our main application is an integrated faceted search tool, accompanied by the visualisation of results of automatic information extraction from textual documents. We describe the details of our technical architecture (open-source tools), to be replicated at other universities, research institutes, or hospitals. Our exemplary use cases are nephrology and mammography. The software was first developed in the nephrology domain and then adapted to the mammography use case. We report on these case studies, illustrating how the application can be used by a clinician and which questions can be answered. We show that our architecture and the employed software modules are suitable for both areas of application with a limited amount of adaptations. For example, in nephrology we try to answer questions about the temporal characteristics of event sequences to gain significant insight from the data for cohort selection. We present a versatile time-line tool that enables the user to explore relations between a multitude of diagnosis and laboratory values.
Faceted search allows the user to explore a data collection by applying filters in an arbitrary order. The information elements are organised by a faceted classification system among multiple dimensions, called facets. In a faceted search interface, labels are assigned to hierarchical items from the collection. This representation known as hierarchical faceted search is gaining great attraction within several information retrieval communities @cite_13 @cite_11 . Some previous approaches focus on automating the creation of such hierarchical faceted metadata structures @cite_22 . We however implement a special multi-facet functionality for our medical data where we already know the hierarchy of the terms according to clinical ontologies. Design recommendations for hierarchical faceted search interfaces @cite_12 include the support for flexible navigation, seamless integration with keyword search on the full text, fluid alternation between refining and expanding, avoidance of empty result sets, and at all times retaining a feeling of control and understanding (of the patient data).
@cite_13 @cite_22 @cite_12 @cite_11
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Faceted search is becoming a popular method to allow users to interactively search and navigate complex information spaces. A faceted search system presents users with key-value metadata that is used for query refinement. While popular in e-commerce and digital libraries, not much research has been conducted on which metadata to present to a user in order to improve the search experience. Nor are there repeatable benchmarks for evaluating a faceted search engine. This paper proposes the use of collaborative filtering and personalization to customize the search interface to each user's behavior. This paper also proposes a utility based framework to evaluate the faceted interface. In order to demonstrate these ideas and better understand personalized faceted search, several faceted search algorithms are proposed and evaluated using the novel evaluation methodology. Previous research has shown that faceted browsing is effective and enjoyable in searching and browsing large collections of data. In this work, we explore the efficacy of interactive visualization systems in supporting exploration and sensemaking within faceted datasets. To do this, we developed an interactive visualization system called FacetLens, which exposes trends and relationships within faceted datasets. FacetLens implements linear facets to enable users not only to identify trends but also to easily compare several trends simultaneously. Furthermore, it offers pivot operations to allow users to navigate the faceted dataset using relationships between items. We evaluate the utility of the system through a description of insights gained while experts used the system to explore the CHI publication repository as well as a database of funding grant data, and report a formative user study that identified usability issues. Documents in rich text corpora usually contain multiple facets of information. For example, an article about a specific disease often consists of different facets such as symptom, treatment, cause, diagnosis, prognosis, and prevention. Thus, documents may have different relations based on different facets. Powerful search tools have been developed to help users locate lists of individual documents that are most related to specific keywords. However, there is a lack of effective analysis tools that reveal the multifaceted relations of documents within or cross the document clusters. In this paper, we present FacetAtlas, a multifaceted visualization technique for visually analyzing rich text corpora. FacetAtlas combines search technology with advanced visual analytical tools to convey both global and local patterns simultaneously. We describe several unique aspects of FacetAtlas, including (1) node cliques and multifaceted edges, (2) an optimized density map, and (3) automated opacity pattern enhancement for highlighting visual patterns, (4) interactive context switch between facets. In addition, we demonstrate the power of FacetAtlas through a case study that targets patient education in the health care domain. Our evaluation shows the benefits of this work, especially in support of complex multifaceted data analysis. This paper extends traditional faceted search to support richer information discovery tasks over more complex data models. Our first extension adds exible, dynamic business intelligence aggregations to the faceted application, enabling users to gain insight into their data that is far richer than just knowing the quantities of documents belonging to each facet. We see this capability as a step toward bringing OLAP capabilities, traditionally supported by databases over relational data, to the domain of free-text queries over metadata-rich content. Our second extension shows how one can efficiently extend a faceted search engine to support correlated facets - a more complex information model in which the values associated with a document across multiple facets are not independent. We show that by reducing the problem to a recently solved tree-indexing scenario, data with correlated facets can be efficiently indexed and retrieved