This paper considers the task of thorax disease classification on chest X-ray images. Existing methods generally use the global image as input for network learning. Such a strategy is limited in two aspects. 1) A thorax disease usually happens in (small) localized areas which are disease specific. Training CNNs using global image may be affected by the (excessive) irrelevant noisy areas. 2) Due to the poor alignment of some CXR images, the existence of irregular borders hinders the network performance. In this paper, we address the above problems by proposing a three-branch attention guided convolution neural network (AG-CNN). AG-CNN 1) learns from disease-specific regions to avoid noise and improve alignment, 2) also integrates a global branch to compensate the lost discriminative cues by local branch. Specifically, we first learn a global CNN branch using global images. Then, guided by the attention heat map generated from the global branch, we inference a mask to crop a discriminative region from the global image. The local region is used for training a local CNN branch. Lastly, we concatenate the last pooling layers of both the global and local branches for fine-tuning the fusion branch. The Comprehensive experiment is conducted on the ChestX-ray14 dataset. We first report a strong global baseline producing an average AUC of 0.841 with ResNet-50 as backbone. After combining the local cues with the global information, AG-CNN improves the average AUC to 0.868. While DenseNet-121 is used, the average AUC achieves 0.871, which is a new state of the art in the community.
The CXR classification problem needs to tell the relatively subtle differences between different diseases. Usually, a disease is often characterized by a lesion region, which contains critical dues for classification. Ypsilantis al @cite_30 explore where to look in chest X-rays with recurrent attention model (RAM) @cite_17 . The RAM learns to sample the entire X-ray image sequentially and focus on informative areas. Only one disease is considered in their work. Recently, Pesce al @cite_5 explore a soft attention mechanism from the saliency map of CNN features to locate lung nodule position in radiographies. And a localization loss is calculated by comparing the predicted position with the annotated position.
@cite_30 @cite_5 @cite_17
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Chest X-Rays (CXRs) are widely used for diagnosing abnormalities in the heart and lung area. Automatically detecting these abnormalities with high accuracy could greatly enhance real world diagnosis processes. Lack of standard publicly available dataset and benchmark studies, however, makes it difficult to compare various detection methods. In order to overcome these difficulties, we have used a publicly available Indiana CXR, JSRT and Shenzhen dataset and studied the performance of known deep convolutional network (DCN) architectures on different abnormalities. We find that the same DCN architecture doesn't perform well across all abnormalities. Shallow features or earlier layers consistently provide higher detection accuracy compared to deep features. We have also found ensemble models to improve classification significantly compared to single model. Combining these insight, we report the highest accuracy on chest X-Ray abnormality detection on these datasets. We find that for cardiomegaly detection, the deep learning method improves the accuracy by a staggering 17 percentage point compared to rule based methods. We applied the techniques to the problem of tuberculosis detection on a different dataset and achieved the highest accuracy. Our localization experiments using these trained classifiers show that for spatially spread out abnormalities like cardiomegaly and pulmonary edema, the network can localize the abnormalities successfully most of the time. One remarkable result of the cardiomegaly localization is that the heart and its surrounding region is most responsible for cardiomegaly detection, in contrast to the rule based models where the ratio of heart and lung area is used as the measure. We believe that through deep learning based classification and localization, we will discover many more interesting features in medical image diagnosis that are not considered traditionally. This paper considers the task of thorax disease classification on chest X-ray images. Existing methods generally use the global image as input for network learning. Such a strategy is limited in two aspects. 1) A thorax disease usually happens in (small) localized areas which are disease specific. Training CNNs using global image may be affected by the (excessive) irrelevant noisy areas. 2) Due to the poor alignment of some CXR images, the existence of irregular borders hinders the network performance. In this paper, we address the above problems by proposing a three-branch attention guided convolution neural network (AG-CNN). AG-CNN 1) learns from disease-specific regions to avoid noise and improve alignment, 2) also integrates a global branch to compensate the lost discriminative cues by local branch. Specifically, we first learn a global CNN branch using global images. Then, guided by the attention heat map generated from the global branch, we inference a mask to crop a discriminative region from the global image. The local region is used for training a local CNN branch. Lastly, we concatenate the last pooling layers of both the global and local branches for fine-tuning the fusion branch. The Comprehensive experiment is conducted on the ChestX-ray14 dataset. We first report a strong global baseline producing an average AUC of 0.841 with ResNet-50 as backbone. After combining the local cues with the global information, AG-CNN improves the average AUC to 0.868. While DenseNet-121 is used, the average AUC achieves 0.871, which is a new state of the art in the community. The National Library of Medicine (NLM) is developing a digital chest X-ray (CXR) screening system for deployment in resource constrained communities and developing countries worldwide with a focus on early detection of tuberculosis. A critical component in the computer-aided diagnosis of digital CXRs is the automatic detection of the lung regions. In this paper, we present a nonrigid registration-driven robust lung segmentation method using image retrieval-based patient specific adaptive lung models that detects lung boundaries, surpassing state-of-the-art performance. The method consists of three main stages: 1) a content-based image retrieval approach for identifying training images (with masks) most similar to the patient CXR using a partial Radon transform and Bhattacharyya shape similarity measure, 2) creating the initial patient-specific anatomical model of lung shape using SIFT-flow for deformable registration of training masks to the patient CXR, and 3) extracting refined lung boundaries using a graph cuts optimization approach with a customized energy function. Our average accuracy of 95.4 on the public JSRT database is the highest among published results. A similar degree of accuracy of 94.1 and 91.7 on two new CXR datasets from Montgomery County, MD, USA, and India, respectively, demonstrates the robustness of our lung segmentation approach. In this work, we exploit the task of joint classification and weakly supervised localization of thoracic diseases from chest radiographs, with only image-level disease labels coupled with disease severity-level (DSL) information of a subset. A convolutional neural network (CNN) based attention-guided curriculum learning (AGCL) framework is presented, which leverages the severity-level attributes mined from radiology reports. Images in order of difficulty (grouped by different severity-levels) are fed to CNN to boost the learning gradually. In addition, highly confident samples (measured by classification probabilities) and their corresponding class-conditional heatmaps (generated by the CNN) are extracted and further fed into the AGCL framework to guide the learning of more distinctive convolutional features in the next iteration. A two-path network architecture is designed to regress the heatmaps from selected seed samples in addition to the original classification task. The joint learning scheme can improve the classification and localization performance along with more seed samples for the next iteration. We demonstrate the effectiveness of this iterative refinement framework via extensive experimental evaluations on the publicly available ChestXray14 dataset. AGCL achieves over 5.7 (averaged over 14 diseases) increase in classification AUC and 7 11 increases in Recall Precision for the localization task compared to the state of the art.