The performance on deep learning is significantly affected by volume of training data. Models pre-trained from massive dataset such as ImageNet become a powerful weapon for speeding up training convergence and improving accuracy. Similarly, models based on large dataset are important for the development of deep learning in 3D medical images. However, it is extremely challenging to build a sufficiently large dataset due to difficulty of data acquisition and annotation in 3D medical imaging. We aggregate the dataset from several medical challenges to build 3DSeg-8 dataset with diverse modalities, target organs, and pathologies. To extract general medical three-dimension (3D) features, we design a heterogeneous 3D network called Med3D to co-train multi-domain 3DSeg-8 so as to make a series of pre-trained models. We transfer Med3D pre-trained models to lung segmentation in LIDC dataset, pulmonary nodule classification in LIDC dataset and liver segmentation on LiTS challenge. Experiments show that the Med3D can accelerate the training convergence speed of target 3D medical tasks 2 times compared with model pre-trained on Kinetics dataset, and 10 times compared with training from scratch as well as improve accuracy ranging from 3 to 20 . Transferring our Med3D model on state-the-of-art DenseASPP segmentation network, in case of single model, we achieve 94.6 Dice coefficient which approaches the result of top-ranged algorithms on the LiTS challenge.
Pan and Yang @cite_3 have indicated that the more similar the data distribution between source domain and target domain, the better the transferring effect. According to the above observation the above defects, we believe that the pre-trained model based on 3D medical dataset should be superior to natural scene video in 3D medical target tasks. Due to the lack of large-scale 3D medical images, co-trained models based on multi-domain 3D medical image dataset may be a solution. Training network cross different domains simultaneously is a challenging task. @cite_38 proposed a data-dependent regularizer based on support vector machine for video concept detection. @cite_46 introduced a mixture-transform model for object classification and @cite_7 presented a domain adaptation network for video tracking. Since the pixel presentation and range of pixel value of medical imaging on different domains are completely different, the above methods for natural images cannot be directly applied onto the medical imaging.
@cite_38 @cite_46 @cite_7 @cite_3
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Convolutional networks (ConvNets) have achieved great successes in various challenging vision tasks. However, the performance of ConvNets would degrade when encountering the domain shift. The domain adaptation is more significant while challenging in the field of biomedical image analysis, where cross-modality data have largely different distributions. Given that annotating the medical data is especially expensive, the supervised transfer learning approaches are not quite optimal. In this paper, we propose an unsupervised domain adaptation framework with adversarial learning for cross-modality biomedical image segmentations. Specifically, our model is based on a dilated fully convolutional network for pixel-wise prediction. Moreover, we build a plug-and-play domain adaptation module (DAM) to map the target input to features which are aligned with source domain feature space. A domain critic module (DCM) is set up for discriminating the feature space of both domains. We optimize the DAM and DCM via an adversarial loss without using any target domain label. Our proposed method is validated by adapting a ConvNet trained with MRI images to unpaired CT data for cardiac structures segmentations, and achieved very promising results. Collecting well-annotated image datasets to train modern machine learning algorithms is prohibitively expensive for many tasks. One appealing alternative is rendering synthetic data where ground-truth annotations are generated automatically. Unfortunately, models trained purely on rendered images often fail to generalize to real images. To address this shortcoming, prior work introduced unsupervised domain adaptation algorithms that attempt to map representations between the two domains or learn to extract features that are domain-invariant. In this work, we present a new approach that learns, in an unsupervised manner, a transformation in the pixel space from one domain to the other. Our generative adversarial network (GAN)-based method adapts source-domain images to appear as if drawn from the target domain. Our approach not only produces plausible samples, but also outperforms the state-of-the-art on a number of unsupervised domain adaptation scenarios by large margins. Finally, we demonstrate that the adaptation process generalizes to object classes unseen during training. Collecting well-annotated image datasets to train modern machine learning algorithms is prohibitively expensive for many tasks. One appealing alternative is rendering synthetic data where ground-truth annotations are generated automatically. Unfortunately, models trained purely on rendered images fail to generalize to real images. To address this shortcoming, prior work introduced unsupervised domain adaptation algorithms that have tried to either map representations between the two domains, or learn to extract features that are domain-invariant. In this work, we approach the problem in a new light by learning in an unsupervised manner a transformation in the pixel space from one domain to the other. Our generative adversarial network (GAN)-based method adapts source-domain images to appear as if drawn from the target domain. Our approach not only produces plausible samples, but also outperforms the state-of-the-art on a number of unsupervised domain adaptation scenarios by large margins. Finally, we demonstrate that the adaptation process generalizes to object classes unseen during training. Transferring the knowledge learned from large scale datasets (e.g., ImageNet) via fine-tuning offers an effective solution for domain-specific fine-grained visual categorization (FGVC) tasks (e.g., recognizing bird species or car make & model). In such scenarios, data annotation often calls for specialized domain knowledge and thus is difficult to scale. In this work, we first tackle a problem in large scale FGVC. Our method won first place in iNaturalist 2017 large scale species classification challenge. Central to the success of our approach is a training scheme that uses higher image resolution and deals with the long-tailed distribution of training data. Next, we study transfer learning via fine-tuning from large scale datasets to small scale, domain-specific FGVC datasets. We propose a measure to estimate domain similarity via Earth Mover's Distance and demonstrate that transfer learning benefits from pre-training on a source domain that is similar to the target domain by this measure. Our proposed transfer learning outperforms ImageNet pre-training and obtains state-of-the-art results on multiple commonly used FGVC datasets.