Feature missing is a serious problem in many applications, which may lead to low quality of training data and further significantly degrade the learning performance. While feature acquisition usually involves special devices or complex process, it is expensive to acquire all feature values for the whole dataset. On the other hand, features may be correlated with each other, and some values may be recovered from the others. It is thus important to decide which features are most informative for recovering the other features as well as improving the learning performance. In this paper, we try to train an effective classification model with least acquisition cost by jointly performing active feature querying and supervised matrix completion. When completing the feature matrix, a novel target function is proposed to simultaneously minimize the reconstruction error on observed entries and the supervised loss on training data. When querying the feature value, the most uncertain entry is actively selected based on the variance of previous iterations. In addition, a bi-objective optimization method is presented for cost-aware active selection when features bear different acquisition costs. The effectiveness of the proposed approach is well validated by both theoretical analysis and experimental study.
A common limitation of these methods is that they do not consider the case where some of the missing features can be accurately recovered from the observed entries, and thus may waste the acquisition cost of unnecessary queries. There is one study that tried to query both missing features and labels, and built an imputation model for missing features @cite_2 . However, it requires a complete set of training examples for training a model, which may not be satisfied in real applications .
@cite_2
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Missing values are a common problem when applying classification algorithms to real-world medical data. This is especially true for trauma patients, where the emergent nature of the cases makes it difficult to collect all of the relevant data for each patient. Standard methods for handling missingness first learn a model to estimate missing data values, and subsequently train and evaluate a classifier using data imputed with this model. Recently, several proposed methods have demonstrated the benefits of jointly estimating the imputation model and classifier parameters. However, these methods make assumptions that limit their utility with many real-world medical datasets. For example, the assumption that data elements are missing at random is often invalid.We address this situation by exploring a novel approach for jointly learning the imputation model and classifier. Unlike previous algorithms, our approach makes no assumptions about the missingness of the data, can be used with arbitrary probabilistic data models and classification loss functions, and can be used when both the training and testing data have missing values. We investigate the utility of this approach on the prediction of several patient outcomes in a large national registry of trauma patients, and find that it significantly outperforms standard sequential methods. Missing values widely exist in many real-world datasets, which hinders the performing of advanced data analytics. Properly filling these missing values is crucial but challenging, especially when the missing rate is high. Many approaches have been proposed for missing value imputation (MVI), but they are mostly heuristics-based, lacking a principled foundation and do not perform satisfactorily in practice. In this paper, we propose a probabilistic framework based on deep generative models for MVI. Under this framework, imputing the missing entries amounts to seeking a fixed-point solution between two conditional distributions defined on the missing entries and latent variables respectively. These distributions are parameterized by deep neural networks (DNNs) which possess high approximation power and can capture the nonlinear relationships between missing entries and the observed values. The learning of weight parameters of DNNs is performed by maximizing an approximation of the log-likelihood of observed values. We conducted extensive evaluation on 13 datasets and compared with 11 baselines methods, where our methods largely outperforms the baselines. Imputing missing values in high dimensional time-series is a difficult problem. This paper presents a strategy for training energy-based graphical models for imputation directly, bypassing difficulties probabilistic approaches would face. The training strategy is inspired by recent work on optimization-based learning (Domke, 2012) and allows complex neural models with convolutional and recurrent structures to be trained for imputation tasks. In this work, we use this training strategy to derive learning rules for three substantially different neural architectures. Inference in these models is done by either truncated gradient descent or variational mean-field iterations. In our experiments, we found that the training methods outperform the Contrastive Divergence learning algorithm. Moreover, the training methods can easily handle missing values in the training data itself during learning. We demonstrate the performance of this learning scheme and the three models we introduce on one artificial and two real-world data sets. Missing data is a significant problem impacting all domains. State-of-the-art framework for minimizing missing data bias is multiple imputation, for which the choice of an imputation model remains nontrivial. We propose a multiple imputation model based on overcomplete deep denoising autoencoders. Our proposed model is capable of handling different data types, missingness patterns, missingness proportions and distributions. Evaluation on several real life datasets show our proposed model significantly outperforms current state-of-the-art methods under varying conditions while simultaneously improving end of the line analytics.