We consider the analysis of high dimensional data given in the form of a matrix with columns consisting of observations and rows consisting of features. Often the data is such that the observations do not reside on a regular grid, and the given order of the features is arbitrary and does not convey a notion of locality. Therefore, traditional transforms and metrics cannot be used for data organization and analysis. In this paper, our goal is to organize the data by defining an appropriate representation and metric such that they respect the smoothness and structure underlying the data. We also aim to generalize the joint clustering of observations and features in the case the data does not fall into clear disjoint groups. For this purpose, we propose multiscale data-driven transforms and metrics based on trees. Their construction is implemented in an iterative refinement procedure that exploits the co-dependencies between features and observations. Beyond the organization of a single dataset, our approach enables us to transfer the organization learned from one dataset to another and to integrate several datasets together. We present an application to breast cancer gene expression analysis: learning metrics on the genes to cluster the tumor samples into cancer sub-types and validating the joint organization of both the genes and the samples. We demonstrate that using our approach to combine information from multiple gene expression cohorts, acquired by different profiling technologies, improves the clustering of tumor samples.
This work is also related to the matrix factorization proposed by @cite_10 , where the graph Laplacians of both the features and the observation regularize the decomposition of a dataset into a low-rank matrix and a sparse matrix representing noise. Then the observations are clustered using k-means on the low-dimensional principal components of the smooth low-rank matrix. Our work differs in that we preform an iterative embedding of the observations and features, not jointly, but alternating between the two while updating the graph Laplacian of each in turn. In addition, we provide a clustering of the data.
@cite_10
2346506533 2964122166 2084376194 2963701987
Low-rank recovery models have shown potential for salient object detection, where a matrix is decomposed into a low-rank matrix representing image background and a sparse matrix identifying salient objects. Two deficiencies, however, still exist. First, previous work typically assumes the elements in the sparse matrix are mutually independent, ignoring the spatial and pattern relations of image regions. Second, when the low-rank and sparse matrices are relatively coherent, e.g., when there are similarities between the salient objects and background or when the background is complicated, it is difficult for previous models to disentangle them. To address these problems, we propose a novel structured matrix decomposition model with two structural regularizations: (1) a tree-structured sparsity-inducing regularization that captures the image structure and enforces patches from the same object to have similar saliency values, and (2) a Laplacian regularization that enlarges the gaps between salient objects and the background in feature space. Furthermore, high-level priors are integrated to guide the matrix decomposition and boost the detection. We evaluate our model for salient object detection on five challenging datasets including single object, multiple objects and complex scene images, and show competitive results as compared with 24 state-of-the-art methods in terms of seven performance metrics. The smallest eigenvalues and the associated eigenvectors (i.e., eigenpairs) of a graph Laplacian matrix have been widely used for spectral clustering and community detection. However, in real-life applications, the number of clusters or communities (say, K) is generally unknown a priori. Consequently, the majority of the existing methods either choose K heuristically or they repeat the clustering method with different choices of K and accept the best clustering result. The first option, more often, yields suboptimal result, while the second option is computationally expensive. In this work, we propose an incremental method for constructing the eigenspectrum of the graph Laplacian matrix. This method leverages the eigenstructure of graph Laplacian matrix to obtain the Kth smallest eigenpair of the Laplacian matrix given a collection of all previously computed (K-1 ) smallest eigenpairs. Our proposed method adapts the Laplacian matrix such that the batch eigenvalue decomposition problem transforms into an efficient sequential leading eigenpair computation problem. As a practical application, we consider user-guided spectral clustering. Specifically, we demonstrate that users can utilize the proposed incremental method for effective eigenpair computation and for determining the desired number of clusters based on multiple clustering metrics. In this paper, we consider the problem of unsupervised feature selection. Recently, spectral feature selection algorithms, which leverage both graph Laplacian and spectral regression, have received increasing attention. However, existing spectral feature selection algorithms suffer from two major problems: 1) since the graph Laplacian is constructed from the original feature space, noisy and irrelevant features may have adverse effect on the estimated graph Laplacian and hence degenerate the quality of the induced graph embedding, 2) since the cluster labels are discrete in natural, relaxing and approximating these labels into a continuous embedding can inevitably introduce noise into the estimated cluster labels. Without considering the noise in the cluster labels, the feature selection process may be misguided. In this paper, we propose a Robust Spectral learning framework for unsupervised Feature Selection (RSFS), which jointly improves the robustness of graph embedding and sparse spectral regression. Compared with existing methods which are sensitive to noisy features, our proposed method utilizes a robust local learning method to construct the graph Laplacian and a robust spectral regression method to handle the noise on the learned cluster labels. In order to solve the proposed optimization problem, an efficient iterative algorithm is proposed. We also show the close connection between the proposed robust spectral regression and robust Huber M-estimator. Experimental results on different datasets show the superiority of RSFS. Multi-view spectral clustering, which aims at yielding an agreement or consensus data objects grouping across multi-views with their graph laplacian matrices, is a fundamental clustering problem. Among the existing methods, Low-Rank Representation (LRR) based method is quite superior in terms of its effectiveness, intuitiveness and robustness to noise corruptions. However, it aggressively tries to learn a common low-dimensional subspace for multi-view data, while inattentively ignoring the local manifold structure in each view, which is critically important to the spectral clustering; worse still, the low-rank minimization is enforced to achieve the data correlation consensus among all views, failing to flexibly preserve the local manifold structure for each view. In this paper, 1) we propose a multi-graph laplacian regularized LRR with each graph laplacian corresponding to one view to characterize its local manifold structure. 2) Instead of directly enforcing the low-rank minimization among all views for correlation consensus, we separately impose low-rank constraint on each view, coupled with a mutual structural consensus constraint, where it is able to not only well preserve the local manifold structure but also serve as a constraint for that from other views, which iteratively makes the views more agreeable. Extensive experiments on real-world multi-view data sets demonstrate its superiority.