Abstract Clinical named entity recognition aims to identify and classify clinical terms such as diseases, symptoms, treatments, exams, and body parts in electronic health records, which is a fundamental and crucial task for clinical and translational research. In recent years, deep neural networks have achieved significant success in named entity recognition and many other natural language processing tasks. Most of these algorithms are trained end to end, and can automatically learn features from large scale labeled datasets. However, these data-driven methods typically lack the capability of processing rare or unseen entities. Previous statistical methods and feature engineering practice have demonstrated that human knowledge can provide valuable information for handling rare and unseen cases. In this paper, we propose a new model which combines data-driven deep learning approaches and knowledge-driven dictionary approaches. Specifically, we incorporate dictionaries into deep neural networks. In addition, two different architectures that extend the bi-directional long short-term memory neural network and five different feature representation schemes are also proposed to handle the task. Computational results on the CCKS-2017 Task 2 benchmark dataset show that the proposed method achieves the highly competitive performance compared with the state-of-the-art deep learning methods.
Rule-based approaches rely on heuristics and handcrafted rules to identify entities. They were the dominant approaches in the early CNER systems @cite_30 @cite_12 and some recent work @cite_23 @cite_27 . However, it is difficult to list all rules to model the structure of clinical named entities, and this kind of handcrafted approaches always leads to a relatively high system engineering cost.
@cite_30 @cite_27 @cite_23 @cite_12
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Translating clinical practice guidelines into a computer-interpretable format is a challenging and laborious task. In this project we focus on supporting the early steps of the modeling process by automatically identifying conditional activities in guideline documents in order to model them automatically in further consequence. Therefore, we developed a rule-based, heuristic method that combines domain-independent information extraction rules and semantic pattern rules. The classification also uses a weighting coefficient to verify the relevance of the sentence in the context of other information aspects, such as effects, intentions, etc. Our evaluation results show that even with a small set of training data, we achieved a recall of 75 and a precision of 88 . This outcome shows that this method supports the modeling task and eases the translation of CPGs into a semi-formal model. State-of-the-art named entity recognition systems rely heavily on hand-crafted features and domain-specific knowledge in order to learn effectively from the small, supervised training corpora that are available. In this paper, we introduce two new neural architectures---one based on bidirectional LSTMs and conditional random fields, and the other that constructs and labels segments using a transition-based approach inspired by shift-reduce parsers. Our models rely on two sources of information about words: character-based word representations learned from the supervised corpus and unsupervised word representations learned from unannotated corpora. Our models obtain state-of-the-art performance in NER in four languages without resorting to any language-specific knowledge or resources such as gazetteers. State-of-the-art systems of Chinese Named Entity Recognition (CNER) require large amounts of hand-crafted features and domain-specific knowledge to achieve high performance. In this paper, we apply a bidirectional LSTM-CRF neural network that utilizes both character-level and radical-level representations. We are the first to use character-based BLSTM-CRF neural architecture for CNER. By contrasting the results of different variants of LSTM blocks, we find the most suitable LSTM block for CNER. We are also the first to investigate Chinese radical-level representations in BLSTM-CRF architecture and get better performance without carefully designed features. We evaluate our system on the third SIGHAN Bakeoff MSRA data set for simplfied CNER task and achieve state-of-the-art performance 90.95 F1. In the field of infrastructures’ surveillance and protection, it is important to make decisions based on activities occurring in the environment and its local context and conditions. In this paper we use an active rule based event processing architecture in order to make sense of situations from the combination of different signals received by the rule engine. However obtaining some high level information automatically is not without risks, especially in sensitive environments, and detection mistakes can happen for various reasons: the signal’s source can be defective, whether it is human—miss-interpretation of the signal—or computed—material malfunction; the aggregation rules can be wrong syntaxically, for example when a rule will never be triggered or a situation never detected; the interpretation given to the combination of signals does not correspond to the reality on the field—because the knowledge of the rule designer is subjective or because the environment evolves over-time—the rules are therefore incorrect semantically. In this paper, a new approach is proposed to avoid the third kind of error sources. We present a hybrid machine learning technique adapted to the complexity of the rules’ representation, in order to create a system more conform to reality. The proposed approach uses a combination of an Association Rule Mining algorithm and Inductive Logic Programming for rule induction. Empirical studies on simulated datasets demonstrate how our method can contribute to sensible systems such as the security of a public or semi-public place.