Biological membranes are one of the most basic structures and regions of interest in cell biology. In the study of membranes, segment extraction is a well-known and difficult problem because of impeding noise, directional and thickness variability, etc. Recent advances in electron microscopy membrane segmentation are able to cope with such difficulties by training convolutional neural networks. However, because of the massive amount of features that have to be extracted while propagating forward, the practical usability diminishes, even with state-of-the-art GPU's. A significant part of these network features typically contains redundancy through correlation and sparsity. In this work, we propose a pruning method for convolutional neural networks that ensures the training loss increase is minimized. We show that the pruned networks, after retraining, are more efficient in terms of time and memory, without significantly affecting the network accuracy. This way, we manage to obtain real-time membrane segmentation performance, for our specific electron microscopy setup.
CNN's extract a large amount of features by combining various layers of convolutions, making them computationally intensive. Even with the most advanced GPU's, this can become an issue. Therefore, pruning methods have been proposed @cite_1 @cite_9 @cite_10 . These techniques remove feature maps, based on particle filters @cite_1 or weight sparsity @cite_9 @cite_10 , and retrain the pruned network. In this work, we propose a pruning method based on training loss minimization, while maintaining the original network accuracy. Our method shows competitive performance, compared to state-of-the-art sparsity-based pruning.
@cite_10 @cite_9 @cite_1
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The success of CNNs in various applications is accompanied by a significant increase in the computation and parameter storage costs. Recent efforts toward reducing these overheads involve pruning and compressing the weights of various layers without hurting original accuracy. However, magnitude-based pruning of weights reduces a significant number of parameters from the fully connected layers and may not adequately reduce the computation costs in the convolutional layers due to irregular sparsity in the pruned networks. We present an acceleration method for CNNs, where we prune filters from CNNs that are identified as having a small effect on the output accuracy. By removing whole filters in the network together with their connecting feature maps, the computation costs are reduced significantly. In contrast to pruning weights, this approach does not result in sparse connectivity patterns. Hence, it does not need the support of sparse convolution libraries and can work with existing efficient BLAS libraries for dense matrix multiplications. We show that even simple filter pruning techniques can reduce inference costs for VGG-16 by up to 34 and ResNet-110 by up to 38 on CIFAR10 while regaining close to the original accuracy by retraining the networks. The success of CNNs in various applications is accompanied by a significant increase in the computation and parameter storage costs. Recent efforts toward reducing these overheads involve pruning and compressing the weights of various layers without hurting original accuracy. However, magnitude-based pruning of weights reduces a significant number of parameters from the fully connected layers and may not adequately reduce the computation costs in the convolutional layers due to irregular sparsity in the pruned networks. We present an acceleration method for CNNs, where we prune filters from CNNs that are identified as having a small effect on the output accuracy. By removing whole filters in the network together with their connecting feature maps, the computation costs are reduced significantly. In contrast to pruning weights, this approach does not result in sparse connectivity patterns. Hence, it does not need the support of sparse convolution libraries and can work with existing efficient BLAS libraries for dense matrix multiplications. We show that even simple filter pruning techniques can reduce inference costs for VGG-16 by up to 34 and ResNet-110 by up to 38 on CIFAR10 while regaining close to the original accuracy by retraining the networks. Real-time application of deep learning algorithms is often hindered by high computational complexity and frequent memory accesses. Network pruning is a promising technique to solve this problem. However, pruning usually results in irregular network connections that not only demand extra representation efforts but also do not fit well on parallel computation. We introduce structured sparsity at various scales for convolutional neural networks: feature map-wise, kernel-wise, and intra-kernel strided sparsity. This structured sparsity is very advantageous for direct computational resource savings on embedded computers, in parallel computing environments, and in hardware-based systems. To decide the importance of network connections and paths, the proposed method uses a particle filtering approach. The importance weight of each particle is assigned by assessing the misclassification rate with a corresponding connectivity pattern. The pruned network is retrained to compensate for the losses due to pruning. While implementing convolutions as matrix products, we particularly show that intra-kernel strided sparsity with a simple constraint can significantly reduce the size of the kernel and feature map tensors. The proposed work shows that when pruning granularities are applied in combination, we can prune the CIFAR-10 network by more than 70 with less than a 1 loss in accuracy. Recently there has been a lot of work on pruning filters from deep convolutional neural networks (CNNs) with the intention of reducing computations. The key idea is to rank the filters based on a certain criterion (say, l1-norm, average percentage of zeros, etc) and retain only the top ranked filters. Once the low scoring filters are pruned away the remainder of the network is fine tuned and is shown to give performance comparable to the original unpruned network. In this work, we report experiments which suggest that the comparable performance of the pruned network is not due to the specific criterion chosen but due to the inherent plasticity of deep neural networks which allows them to recover from the loss of pruned filters once the rest of the filters are fine-tuned. Specifically, we show counter-intuitive results wherein by randomly pruning 25-50 filters from deep CNNs we are able to obtain the same performance as obtained by using state of the art pruning methods. We empirically validate our claims by doing an exhaustive evaluation with VGG-16 and ResNet-50. Further, we also evaluate a real world scenario where a CNN trained on all 1000 ImageNet classes needs to be tested on only a small set of classes at test time (say, only animals). We create a new benchmark dataset from ImageNet to evaluate such class specific pruning and show that even here a random pruning strategy gives close to state of the art performance. Lastly, unlike existing approaches which mainly focus on the task of image classification, in this work we also report results on object detection. We show that using a simple random pruning strategy we can achieve significant speed up in object detection (74 improvement in fps) while retaining the same accuracy as that of the original Faster RCNN model.