The majority of medical documents and electronic health records are in text format that poses a challenge for data processing and finding relevant documents. Looking for ways to automatically retrieve the enormous amount of health and medical knowledge has always been an intriguing topic. Powerful methods have been developed in recent years to make the text processing automatic. One of the popular approaches to retrieve information based on discovering the themes in health and medical corpora is topic modeling; however, this approach still needs new perspectives. In this research, we describe fuzzy latent semantic analysis (FLSA), a novel approach in topic modeling using fuzzy perspective. FLSA can handle health and medical corpora redundancy issue and provides a new method to estimate the number of topics. The quantitative evaluations show that FLSA produces superior performance and features to latent Dirichlet allocation, the most popular topic model.
There are two main approaches in text mining: supervised and unsupervised. The goal of supervised approach is to disclose hidden structure in labeled datasets and the goal of unsupervised approach is to discover patterns in unlabeled datasets. The most popular techniques in supervised and unsupervised approaches are classification and clustering, correspondingly. The purpose of classification is to train a corpus with predefined labels and assign a label to a new document @cite_38 . Clustering assigns a cluster to each document in a corpus based on similarity in a cluster and dissimilarity between clusters. Among text mining techniques, topic modeling is one of popular unsupervised methods with a wide range of applications from SMS spam detection @cite_15 to image tagging @cite_28 .
@cite_28 @cite_38 @cite_15
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This paper investigates an important problem in stream mining, i.e., classification under streaming emerging new classes or SENC . The SENC problem can be decomposed into three subproblems: detecting emerging new classes, classifying known classes, and updating models to integrate each new class as part of known classes. The common approach is to treat it as a classification problem and solve it using either a supervised learner or a semi-supervised learner. We propose an alternative approach by using unsupervised learning as the basis to solve this problem. The proposed method employs completely-random trees which have been shown to work well in unsupervised learning and supervised learning independently in the literature. The completely-random trees are used as a single common core to solve all three subproblems: unsupervised learning, supervised learning, and model update on data streams. We show that the proposed unsupervised-learning-focused method often achieves significantly better outcomes than existing classification-focused methods. In this paper, we introduce and compare between two novel approaches, supervised and unsupervised, for identifying the keywords to be used in extractive summarization of text documents. Both our approaches are based on the graph-based syntactic representation of text and web documents, which enhances the traditional vector-space model by taking into account some structural document features. In the supervised approach, we train classification algorithms on a summarized collection of documents with the purpose of inducing a keyword identification model. In the unsupervised approach, we run the HITS algorithm on document graphs under the assumption that the top-ranked nodes should represent the document keywords. Our experiments on a collection of benchmark summaries show that given a set of summarized training documents, the supervised classification provides the highest keyword identification accuracy, while the highest F-measure is reached with a simple degree-based ranking. In addition, it is sufficient to perform only the first iteration of HITS rather than running it to its convergence. Many methods, including supervised and unsupervised algorithms, have been developed for extractive document summarization. Most supervised methods consider the summarization task as a two-class classification problem and classify each sentence individually without leveraging the relationship among sentences. The unsupervised methods use heuristic rules to select the most informative sentences into a summary directly, which are hard to generalize. In this paper, we present a Conditional Random Fields (CRF) based framework to keep the merits of the above two kinds of approaches while avoiding their disadvantages. What is more, the proposed framework can take the outcomes of previous methods as features and seamlessly integrate them. The key idea of our approach is to treat the summarization task as a sequence labeling problem. In this view, each document is a sequence of sentences and the summarization procedure labels the sentences by 1 and 0. The label of a sentence depends on the assignment of labels of others. We compared our proposed approach with eight existing methods on an open benchmark data set. The results show that our approach can improve the performance by more than 7.1 and 12.1 over the best supervised baseline and unsupervised baseline respectively in terms of two popular metrics F1 and ROUGE-2. Detailed analysis of the improvement is presented as well. The wealth of interaction information provided in biomedical articles motivated the implementation of text mining approaches to automatically extract biomedical relations. This paper presents an unsupervised method based on pattern clustering and sentence parsing to deal with biomedical relation extraction. Pattern clustering algorithm is based on Polynomial Kernel method, which identifies interaction words from unlabeled data; these interaction words are then used in relation extraction between entity pairs. Dependency parsing and phrase structure parsing are combined for relation extraction. Based on the semi-supervised KNN algorithm, we extend the proposed unsupervised approach to a semi-supervised approach by combining pattern clustering, dependency parsing and phrase structure parsing rules. We evaluated the approaches on two different tasks: (1) Protein–protein interactions extraction, and (2) Gene–suicide association extraction. The evaluation of task (1) on the benchmark dataset (AImed corpus) showed that our proposed unsupervised approach outperformed three supervised methods. The three supervised methods are rule based, SVM based, and Kernel based separately. The proposed semi-supervised approach is superior to the existing semi-supervised methods. The evaluation on gene–suicide association extraction on a smaller dataset from Genetic Association Database and a larger dataset from publicly available PubMed showed that the proposed unsupervised and semi-supervised methods achieved much higher F-scores than co-occurrence based method.