In the wake of recent advances in experimental methods in neuroscience, the ability to record in-vivo neuronal activity from awake animals has become feasible. The availability of such rich and detailed physiological measurements calls for the development of advanced data analysis tools, as commonly used techniques do not suffice to capture the spatio-temporal network complexity. In this paper, we propose a new hierarchical coupled-geometry analysis that implicitly takes into account the connectivity structures between neurons and the dynamic patterns at multiple time scales. Our approach gives rise to the joint organization of neurons and dynamic patterns in data-driven hierarchical data structures. These structures provide local to global data representations, from local partitioning of the data in flexible trees through a new multiscale metric to a global manifold embedding. The application of our techniques to in-vivo neuronal recordings demonstrate the capability of extracting neuronal activity patterns and identifying temporal trends, associated with particular behavioral events and manipulations introduced in the experiments.
These methods share significant drawbacks, as they are mostly heuristic, providing only an approximation of a largely unknown system, and their quality is often hard to assess @cite_0 . More importantly, they are all prone to the curse of dimensionality". On the one hand, designing a parametric generative model for truly complex high-dimensional data, such as neuronal behavioral recordings, requires considerable flexibility, resulting in a model with a large number of tunable parameters. On the other hand, estimating a large number of parameters, and fitting a predefined class of dynamical models to high-dimensional data, is practically infeasible, thereby leading to poor data representations. Our approach is better designed to deal with dynamical systems and aims to alleviate the shortcomings present in current analysis methods. The proposed framework deviates from common recently used in neuroscience as it makes only very general smoothness assumptions, rather than postulating a-priori specific structural models. In addition, we show that it takes into consideration the high dimensional spatio-temporal neuronal network structure.
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Building intelligent systems that are capable of extracting high-level representations from high-dimensional sensory data lies at the core of solving many AI related tasks, including object recognition, speech perception, and language understanding. Theoretical and biological arguments strongly suggest that building such systems requires models with deep architectures that involve many layers of nonlinear processing. The aim of the thesis is to demonstrate that deep generative models that contain many layers of latent variables and millions of parameters can be learned efficiently, and that the learned high-level feature representations can be successfully applied in a wide spectrum of application domains, including visual object recognition, information retrieval, and classification and regression tasks. In addition, similar methods can be used for nonlinear dimensionality reduction. The first part of the thesis focuses on analysis and applications of probabilistic generative models called Deep Belief Networks. We show that these deep hierarchical models can learn useful feature representations from a large supply of unlabeled sensory inputs. The learned high-level representations capture a lot of structure in the input data, which is useful for subsequent problem-specific tasks, such as classification, regression or information retrieval, even though these tasks are unknown when the generative model is being trained. In the second part of the thesis, we introduce a new learning algorithm for a different type of hierarchical probabilistic model, which we call a Deep Boltzmann Machine. Like Deep Belief Networks, Deep Boltzmann Machines have the potential of learning internal representations that become increasingly complex at higher layers, which is a promising way of solving object and speech recognition problems. Unlike Deep Belief Networks and many existing models with deep architectures, the approximate inference procedure, in addition to a fast bottom-up pass, can incorporate top-down feedback. This allows Deep Boltzmann Machines to better propagate uncertainty about ambiguous inputs. The convolutional neural networks (CNNs) have proven to be a powerful tool for discriminative learning. Recently researchers have also started to show interest in the generative aspects of CNNs in order to gain a deeper understanding of what they have learned and how to further improve them. This paper investigates generative modeling of CNNs. The main contributions include: (1) We construct a generative model for the CNN in the form of exponential tilting of a reference distribution. (2) We propose a generative gradient for pre-training CNNs by a non-parametric importance sampling scheme, which is fundamentally different from the commonly used discriminative gradient, and yet has the same computational architecture and cost as the latter. (3) We propose a generative visualization method for the CNNs by sampling from an explicit parametric image distribution. The proposed visualization method can directly draw synthetic samples for any given node in a trained CNN by the Hamiltonian Monte Carlo (HMC) algorithm, without resorting to any extra hold-out images. Experiments on the challenging ImageNet benchmark show that the proposed generative gradient pre-training consistently helps improve the performances of CNNs, and the proposed generative visualization method generates meaningful and varied samples of synthetic images from a large-scale deep CNN. Generating high-resolution, photo-realistic images has been a long-standing goal in machine learning. Recently, [37] showed one interesting way to synthesize novel images by performing gradient ascent in the latent space of a generator network to maximize the activations of one or multiple neurons in a separate classifier network. In this paper we extend this method by introducing an additional prior on the latent code, improving both sample quality and sample diversity, leading to a state-of-the-art generative model that produces high quality images at higher resolutions (227 &#xd7; 227) than previous generative models, and does so for all 1000 ImageNet categories. In addition, we provide a unified probabilistic interpretation of related activation maximization methods and call the general class of models Plug and Play Generative Networks. PPGNs are composed of 1) a generator network G that is capable of drawing a wide range of image types and 2) a replaceable condition network C that tells the generator what to draw. We demonstrate the generation of images conditioned on a class (when C is an ImageNet or MIT Places classification network) and also conditioned on a caption (when C is an image captioning network). Our method also improves the state of the art of Multifaceted Feature Visualization [40], which generates the set of synthetic inputs that activate a neuron in order to better understand how deep neural networks operate. Finally, we show that our model performs reasonably well at the task of image inpainting. While image models are used in this paper, the approach is modality-agnostic and can be applied to many types of data. Generative state estimators based on probabilistic filters and smoothers are one of the most popular classes of state estimators for robots and autonomous vehicles. However, generative models have limited capacity to handle rich sensory observations, such as camera images, since they must model the entire distribution over sensor readings. Discriminative models do not suffer from this limitation, but are typically more complex to train as latent variable models for state estimation. We present an alternative approach where the parameters of the latent state distribution are directly optimized as a deterministic computation graph, resulting in a simple and effective gradient descent algorithm for training discriminative state estimators. We show that this procedure can be used to train state estimators that use complex input, such as raw camera images, which must be processed using expressive nonlinear function approximators such as convolutional neural networks. Our model can be viewed as a type of recurrent neural network, and the connection to probabilistic filtering allows us to design a network architecture that is particularly well suited for state estimation. We evaluate our approach on synthetic tracking task with raw image inputs and on the visual odometry task in the KITTI dataset. The results show significant improvement over both standard generative approaches and regular recurrent neural networks.