Supporting top-k document retrieval queries on general text databases, that is, finding the k documents where a given pattern occurs most frequently, has become a topic of interest with practical applications. While the problem has been solved in optimal time and linear space, the actual space usage is a serious concern. In this paper we study various reduced-space structures that support top-k retrieval and propose new alternatives. Our experimental results show that our novel algorithms and data structures dominate almost all the space time tradeoff.
We consider the plain and the compressed wavelet tree representations, and the straightforward and novel representations of 's succinct structure. We compare these alternatives with the original 's method (on plain and compressed wavelet trees), to test the hypothesis that adding 's structure is worth the extra space. Similarly, we include in the comparison the basic 's method (with their structure compressed or not) over 's @cite_18 sequence representation, to test the hypothesis that using 's method over the wavelet tree is worth compared to the brute force method over the fastest sequence representation @cite_18 . This brute force method is also at the core of the new proposal by @cite_22 .
@cite_18 @cite_22
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We investigate the usage of the wavelet tree and the rank select-dictionary data structures on hybrid-structured variable-length codes, which represent an integer in the form of a unary code section followed by a binary section. We propose to handle unary and binary partitions as separate streams and create wavelet trees or R S dictionaries over the unary streams, which grants us the opportunity to directly access any codeword. Particularly concentrating on Elias and Rice schemes, we introduce several solutions that i) improve the compression significantly, and ii) provide random access in constant or logarithmic time. Experiments are conducted to compare the performances of the proposed codes against Elias Rice schemes and more recent state-of-the-art codings such as Simple9, PForDelta,DACs, and improved-AC techniques. We observed that the newly introduced methods outperform the original Elias Rice codecs by approximately 30 and the others by approximately 10 in terms of compression ratios. The methods described in this study are generic and may further be extended to some other hybrid structure (unary binary) variable-length codes as well. The field of succinct data structures has flourished over the last 16 years. Starting from the compressed suffix array (CSA) by Grossi and Vitter (STOC 2000) and the FM-index by Ferragina and Manzini (FOCS 2000), a number of generalizations and applications of string indexes based on the Burrows-Wheeler transform (BWT) have been developed, all taking an amount of space that is close to the input size in bits. In many large-scale applications, the construction of the index and its usage need to be considered as one unit of computation. Efficient string indexing and analysis in small space lies also at the core of a number of primitives in the data-intensive field of high-throughput DNA sequencing. We report the following advances in string indexing and analysis. We show that the BWT of a string @math can be built in deterministic @math time using just @math bits of space, where @math . Within the same time and space budget, we can build an index based on the BWT that allows one to enumerate all the internal nodes of the suffix tree of @math . Many fundamental string analysis problems can be mapped to such enumeration, and can thus be solved in deterministic @math time and in @math bits of space from the input string. We also show how to build many of the existing indexes based on the BWT, such as the CSA, the compressed suffix tree (CST), and the bidirectional BWT index, in randomized @math time and in @math bits of space. The previously fastest construction algorithms for BWT, CSA and CST, which used @math bits of space, took @math time for the first two structures, and @math time for the third, where @math is any positive constant. Contrary to the state of the art, our bidirectional BWT index supports every operation in constant time per element in its output. Given a sequence S e s1s2…sn of integers smaller than r e O(polylog(n)), we show how S can be represented using nH0(S) p o(n) bits, so that we can know any sq, as well as answer rank and select queries on S, in constant time. H0(S) is the zero-order empirical entropy of S and nH0(S) provides an information-theoretic lower bound to the bit storage of any sequence S via a fixed encoding of its symbols. This extends previous results on binary sequences, and improves previous results on general sequences where those queries are answered in O(log r) time. For larger r, we can still represent S in nH0(S) p o(n log r) bits and answer queries in O(log r log log n) time. Another contribution of this article is to show how to combine our compressed representation of integer sequences with a compression boosting technique to design compressed full-text indexes that scale well with the size of the input alphabet Σ. Specifically, we design a variant of the FM-index that indexes a string T[1, n] within nHk(T) p o(n) bits of storage, where Hk(T) is the kth-order empirical entropy of T. This space bound holds simultaneously for all k ≤ α logvΣv n, constant 0 Compared to all previous works, our index is the first that removes the alphabet-size dependance from all query times, in particular, counting time is linear in the pattern length. Still, our index uses essentially the same space of the kth-order entropy of the text T, which is the best space obtained in previous work. We can also handle larger alphabets of size vΣv e O(nβ), for any 0 Spanners, emulators, and approximate distance oracles can be viewed as lossy compression schemes that represent an unweighted graph metric in small space, say O(n1+Δ) bits. There is an inherent tradeoff between the sparsity parameter Δ and the stretch function f of the compression scheme, but the qualitative nature of this tradeoff has remained a persistent open problem. It has been known for some time that when Δ ≥ 1 3 there are schemes with constant additive stretch (distance d is stretched to at most f(d) = d + O(1)), and recent results of Abboud and Bodwin show that when Δ In this paper we show that the lower bound of Abboud and Bodwin is just the first step in a hierarchy of lower bounds that characterize the asymptotic behavior of the optimal stretch function f for sparsity parameter Δ ∈ (0,1 3). Specifically, for any integer k ≥ 2, any compression scheme with size [EQUATION] has a sublinear additive stretch function f: f(d) = d + Ω(d1−1 k). This lower bound matches Thorup and Zwick's (2006) construction of sublinear additive emulators. It also shows that Elkin and Peleg's (1 + ϵ, β)-spanners have an essentially optimal tradeoff between Δ, ϵ, and β, and that the sublinear additive spanners of Pettie (2009) and Chechik (2013) are not too far from optimal. To complement these lower bounds we present a new construction of (1 + ϵ, O(k ϵ)k−1)-spanners with size [EQUATION], where hk Our lower bound technique exhibits several interesting degrees of freedom in the framework of Abboud and Bodwin. By carefully exploiting these freedoms, we are able to obtain lower bounds for several related combinatorial objects. We get lower bounds on the size of (β, ϵ)-hopsets, matching Elkin and Neiman's construction (2016), and lower bounds on shortcutting sets for digraphs that preserve the transitive closure. Our lower bound simplifies Hesse's (2003) refutation of Thorup's conjecture (1992), which stated that adding a linear number of shortcuts suffices to reduce the diameter to polylogarithmic. Finally, we show matching upper and lower bounds for graph compression schemes that work for graph metrics with girth at least 2γ + 1. One consequence is that 's (2010) additive O(γ)-spanners with size [EQUATION] cannot be improved in the exponent.