In many applications, we need to measure similarity between nodes in a large network based on features of their neighborhoods. Although in-network node similarity based on proximity has been well investigated, surprisingly, measuring in-network node similarity based on neighborhoods remains a largely untouched problem in literature. One challenge is that in different applications we may need different measurements that manifest different meanings of similarity. Furthermore, we often want to make trade-offs between specificity of neighborhood matching and efficiency. In this paper, we investigate the problem in a principled and systematic manner. We develop a unified parametric model and a series of four instance measures. Those instance similarity measures not only address a spectrum of various meanings of similarity, but also present a series of trade-offs between computational cost and strictness of matching between neighborhoods of nodes being compared. By extensive experiments and case studies, we demonstrate the effectiveness of the proposed model and its instances.
Recently, Henderson @cite_5 proposed RolX, which applied Non-Negative Matrix Factorization to softly cluster nodes in a network. It assumes a node-feature matrix, which is obtained by recursive feature extraction @cite_22 . RolX factorizes the node-feature matrix into a node-role matrix and a role-feature matrix. Then, the node-role matrix can be exploited to compute similarities between nodes. Gilpin @cite_13 introduced supervision to RolX. Since these methods assume a node-feature matrix, they are not specific for in-network neighborhood-based similarity measurement.
@cite_5 @cite_13 @cite_22
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Given a network, intuitively two nodes belong to the same role if they have similar structural behavior. Roles should be automatically determined from the data, and could be, for example, "clique-members," "periphery-nodes," etc. Roles enable numerous novel and useful network-mining tasks, such as sense-making, searching for similar nodes, and node classification. This paper addresses the question: Given a graph, how can we automatically discover roles for nodes? We propose RolX (Role eXtraction), a scalable (linear in the number of edges), unsupervised learning approach for automatically extracting structural roles from general network data. We demonstrate the effectiveness of RolX on several network-mining tasks: from exploratory data analysis to network transfer learning. Moreover, we compare network role discovery with network community discovery. We highlight fundamental differences between the two (e.g., roles generalize across disconnected networks, communities do not); and show that the two approaches are complimentary in nature. We present a new method for clustering based on compression. The method does not use subject-specific features or background knowledge, and works as follows: First, we determine a parameter-free, universal, similarity distance, the normalized compression distance or NCD, computed from the lengths of compressed data files (singly and in pairwise concatenation). Second, we apply a hierarchical clustering method. The NCD is not restricted to a specific application area, and works across application area boundaries. A theoretical precursor, the normalized information distance, co-developed by one of the authors, is provably optimal. However, the optimality comes at the price of using the noncomputable notion of Kolmogorov complexity. We propose axioms to capture the real-world setting, and show that the NCD approximates optimality. To extract a hierarchy of clusters from the distance matrix, we determine a dendrogram (ternary tree) by a new quartet method and a fast heuristic to implement it. The method is implemented and available as public software, and is robust under choice of different compressors. To substantiate our claims of universality and robustness, we report evidence of successful application in areas as diverse as genomics, virology, languages, literature, music, handwritten digits, astronomy, and combinations of objects from completely different domains, using statistical, dictionary, and block sorting compressors. In genomics, we presented new evidence for major questions in Mammalian evolution, based on whole-mitochondrial genomic analysis: the Eutherian orders and the Marsupionta hypothesis against the Theria hypothesis. We present a framework to cluster nodes in directed networks according to their roles by combining Role-Based Similarity (RBS) and Markov Stability, two techniques based on flows. First we compute the RBS matrix, which contains the pairwise similarities between nodes according to the scaled number of in- and out-directed paths of different lengths. The weighted RBS similarity matrix is then transformed into an undirected similarity network using the Relaxed Minimum-Spanning Tree (RMST) algorithm, which uses the geometric structure of the RBS matrix to unblur the network, such that edges between nodes with high, direct RBS are preserved. Finally, we partition the RMST similarity network into role-communities of nodes at all scales using Markov Stability to find a robust set of roles in the network. We showcase our framework through a biological and a man-made network. We introduce an algorithm for a non-negative 3D tensor factorization for the purpose of establishing a local parts feature decomposition from an object class of images. In the past, such a decomposition was obtained using non-negative matrix factorization (NMF) where images were vectorized before being factored by NMF. A tensor factorization (NTF) on the other hand preserves the 2D representations of images and provides a unique factorization (unlike NMF which is not unique). The resulting "factors" from the NTF factorization are both sparse (like with NMF) but also separable allowing efficient convolution with the test image. Results show a superior decomposition to what an NMF can provide on all fronts - degree of sparsity, lack of ghost residue due to invariant parts and efficiency of coding of around an order of magnitude better. Experiments on using the local parts decomposition for face detection using SVM and Adaboost classifiers demonstrate that the recovered features are discriminatory and highly effective for classification.