The segmentation of plant roots from soil and other growing media in X-ray computed tomography images is needed to effectively study the root system architecture without excavation. However, segmentation is a challenging problem in this context because the root and non-root regions share similar features. In this paper, we describe a method based on level sets and specifically adapted for this segmentation problem. In particular, we deal with the issues of using a level sets approach on large image volumes for root segmentation, and track active regions of the front using an occupancy grid. This method allows for straightforward modifications to a narrow-band algorithm such that excessive forward and backward movements of the front can be avoided, distance map computations in a narrow band context can be done in linear time through modification of 's distance transform algorithm, and regions of the image volume are iteratively used to estimate distributions for root versus non-root classes. Results are shown of three plant species of different maturity levels, grown in three different media. Our method compares favorably to a state-of-the-art method for root segmentation in X-ray CT image volumes.
The process in many level-set methods, per iteration, given these preliminaries can be represented roughly in four steps as shown in Algorithm . Because of the presence of @math in Equation , we use the narrow band hypothesis, and the band distance is a parameter in our method. To compute the curvature @math , we use the difference of normals method @cite_29 @cite_20 , and as in @cite_23 approximate @math because @math is the signed distance function.
@cite_29 @cite_23 @cite_20
2001663593 2049981393 2963282659 2002850151
par>We prove some non-approximability results for restrictions of basic combinatorial optimization problems to instances of bounded “degreeror bounded “width.” Specifically: We prove that the Max 3SAT problem on instances where each variable occurs in at most B clauses, is hard to approximate to within a factor @math , unless @math . H stad [18] proved that the problem is approximable to within a factor @math in polynomial time, and that is hard to approximate to within a factor @math . Our result uses a new randomized reduction from general instances of Max 3SAT to bounded-occurrences instances. The randomized reduction applies to other Max SNP problems as well. We observe that the Set Cover problem on instances where each set has size at most B is hard to approximate to within a factor @math unless @math . The result follows from an appropriate setting of parameters in Feige's reduction [11]. This is essentially tight in light of the existence of @math -approximate algorithms [20, 23, 9] We present a new PCP construction, based on applying parallel repetition to the inner verifier,'' and we provide a tight analysis for it. Using the new construction, and some modifications to known reductions from PCP to Hitting Set, we prove that Hitting Set with sets of size B is hard to approximate to within a factor @math . The problem can be approximated to within a factor B [19], and it is the Vertex Cover problem for B =2. The relationship between hardness of approximation and set size seems to have not been explored before. We observe that the Independent Set problem on graphs having degree at most B is hard to approximate to within a factor @math , unless P = NP . This follows from a comination of results by Clementi and Trevisan [28] and Reingold, Vadhan and Wigderson [27]. It had been observed that the problem is hard to approximate to within a factor @math unless P = NP [1]. An algorithm achieving factor @math is also known [21, 2, 30, 16 . The authors describe a general-purpose, representation-independent method for the accurate and computationally efficient registration of 3-D shapes including free-form curves and surfaces. The method handles the full six degrees of freedom and is based on the iterative closest point (ICP) algorithm, which requires only a procedure to find the closest point on a geometric entity to a given point. The ICP algorithm always converges monotonically to the nearest local minimum of a mean-square distance metric, and the rate of convergence is rapid during the first few iterations. Therefore, given an adequate set of initial rotations and translations for a particular class of objects with a certain level of 'shape complexity', one can globally minimize the mean-square distance metric over all six degrees of freedom by testing each initial registration. One important application of this method is to register sensed data from unfixtured rigid objects with an ideal geometric model, prior to shape inspection. Experimental results show the capabilities of the registration algorithm on point sets, curves, and surfaces. > A new algorithm is presented for computing a canonical rank- @math tensor approximation that has minimal distance to a given tensor in the Frobenius norm, where the canonical rank- @math tensor consists of the sum of @math rank-one tensors. Each iteration of the method consists of three steps. In the first step, a tentative new iterate is generated by a stand-alone one-step process, for which we use alternating least squares (ALS). In the second step, an accelerated iterate is generated by a nonlinear generalized minimal residual (GMRES) approach, recombining previous iterates in an optimal way, and essentially using the stand-alone one-step process as a preconditioner. In particular, the nonlinear extension of GMRES we use that was proposed by Washio and Oosterlee in [Electron. Trans. Numer. Anal., 15 (2003), pp. 165--185] for nonlinear partial differential equation problems (which is itself related to other existing acceleration methods for nonlinear equation systems). In the third step, a line search is perfor... A discrete uncoupling process for finite spaces is introduced, called the Markov Cluster Process or the MCL process. The process is the engine for the graph clustering algorithm called the MCL algorithm. The MCL process takes a stochastic matrix as input, and then alternates expansion and inflation, each step defining a stochastic matrix in terms of the previous one. Expansion corresponds with taking the @math th power of a stochastic matrix, where @math . Inflation corresponds with a parametrized operator @math , @math , that maps the set of (column) stochastic matrices onto itself. The image @math is obtained by raising each entry in @math to the @math th power and rescaling each column to have sum 1 again. In practice the process converges very fast towards a limit that is invariant under both matrix multiplication and inflation, with quadratic convergence around the limit points. The heuristic behind the process is its expected behavior for (Markov) graphs possessing cluster structure. The process is typically applied to the matrix of random walks on a given graph @math , and the connected components of (the graph associated with) the process limit generically allow a clustering interpretation of @math . The limit is in general extremely sparse and iterands are sparse in a weighted sense, implying that the MCL algorithm is very fast and highly scalable. Several mathematical properties of the MCL process are established. Most notably, the process (and algorithm) iterands posses structural properties generalizing the mapping from process limits onto clusterings. The inflation operator @math maps the class of matrices that are diagonally similar to a symmetric matrix onto itself. The phrase diagonally positive semi-definite (dpsd) is used for matrices that are diagonally similar to a positive semi-definite matrix. For @math and for @math a stochastic dpsd matrix, the image @math is again dpsd. Determinantal inequalities satisfied by a dpsd matrix @math imply a natural ordering among the diagonal elements of @math , generalizing the mapping of process limits onto clusterings. The spectrum of @math is of the form @math , where @math is the number of endclasses of the ordering associated with @math , and @math is the dimension of @math . This attests to the uncoupling effect of the inflation operator.