Logical hidden Markov models (LOHMMs) upgrade traditional hidden Markov models to deal with sequences of structured symbols in the form of logical atoms, rather than flat characters. This note formally introduces LOHMMs and presents solutions to the three central inference problems for LOHMMs: evaluation, most likely hidden state sequence and parameter estimation. The resulting representation and algorithms are experimentally evaluated on problems from the domain of bioinformatics.
Hierarchical HMMs @cite_4 , factorial HMMs , and HMMs based on tree automata @cite_35 decompose the state variables into smaller units. In hierarchical HMMs states themselves can be HMMs, in factorial HMMs they can be factored into @math state variables which depend on one another only through the observation, and in tree based HMMs the represented probability distributions are defined over tree structures. The key difference with LOHMMs is that these approaches do not employ the logical concept of unification. Unification is essential because it allows us to introduce abstract transitions, which do not consist of more detailed states. As our experimental evidence shows, sharing information among abstract states by means of unification can lead to more accurate model estimation. The same holds for relational Markov models (RMMs) @cite_26 to which LOHMMs are most closely related. In RMMs, states can be of different types, with each type described by a different set of variables. The domain of each variable can be hierarchically structured. The main differences between LOHMMs and RMMs are that RMMs do not either support variable binding nor unification nor hidden states.
@cite_35 @cite_26 @cite_4
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Hidden Markov models (HMMs) have proven to be one of the most widely used tools for learning probabilistic models of time series data. In an HMM, information about the past is conveyed through a single discrete variable—the hidden state. We discuss a generalization of HMMs in which this state is factored into multiple state variables and is therefore represented in a distributed manner. We describe an exact algorithm for inferring the posterior probabilities of the hidden state variables given the observations, and relate it to the forward–backward algorithm for HMMs and to algorithms for more general graphical models. Due to the combinatorial nature of the hidden state representation, this exact algorithm is intractable. As in other intractable systems, approximate inference can be carried out using Gibbs sampling or variational methods. Within the variational framework, we present a structured approximation in which the the state variables are decoupled, yielding a tractable algorithm for learning the parameters of the model. Empirical comparisons suggest that these approximations are efficient and provide accurate alternatives to the exact methods. Finally, we use the structured approximation to model Bach‘s chorales and show that factorial HMMs can capture statistical structure in this data set which an unconstrained HMM cannot. Recently, hidden Markov models (HMMs) have achieved promising results for offline handwritten Chinese text recognition. However, due to the large vocabulary of Chinese characters with each modeled by a uniform and fixed number of hidden states, a high demand of memory and computation is required. In this study, to address this issue, we present parsimonious HMMs via the state tying which can fully utilize the similarities among different Chinese characters. Two-step algorithm with the data-driven question-set is adopted to generate the tied-state pool using the likelihood measure. The proposed parsimonious HMMs with both Gaussian mixture models (GMMs) and deep neural networks (DNNs) as the emission distributions not only lead to a compact model but also improve the recognition accuracy via the data sharing for the tied states and the confusion decreasing among state classes. Tested on ICDAR-2013 competition database, in the best configured case, the new parsimonious DNN-HMM can yield a relative character error rate (CER) reduction of 6.2 , 25 reduction of model size and 60 reduction of decoding time over the conventional DNN-HMM. In the compact setting case of average 1-state HMM, our parsimonious DNN-HMM significantly outperforms the conventional DNN-HMM with a relative CER reduction of 35.5 . We consider problems of sequence processing and propose a solution based on a discrete-state model in order to represent past context. We introduce a recurrent connectionist architecture having a modular structure that associates a subnetwork to each state. The model has a statistical interpretation we call input-output hidden Markov model (IOHMM). It can be trained by the estimation-maximization (EM) or generalized EM (GEM) algorithms, considering state trajectories as missing data, which decouples temporal credit assignment and actual parameter estimation. The model presents similarities to hidden Markov models (HMMs), but allows us to map input sequences to output sequences, using the same processing style as recurrent neural networks. IOHMMs are trained using a more discriminant learning paradigm than HMMs, while potentially taking advantage of the EM algorithm. We demonstrate that IOHMMs are well suited for solving grammatical inference problems on a benchmark problem. Experimental results are presented for the seven Tomita grammars, showing that these adaptive models can attain excellent generalization. In unsupervised classification, Hidden Markov Models (HMM) are used to account for a neighborhood structure between observations. The emission distributions are often supposed to belong to some parametric family. In this paper, a semiparametric model where the emission distributions are a mixture of parametric distributions is proposed to get a higher flexibility. We show that the standard EM algorithm can be adapted to infer the model parameters. For the initialization step, starting from a large number of components, a hierarchical method to combine them into the hidden states is proposed. Three likelihood-based criteria to select the components to be combined are discussed. To estimate the number of hidden states, BIC-like criteria are derived. A simulation study is carried out both to determine the best combination between the combining criteria and the model selection criteria and to evaluate the accuracy of classification. The proposed method is also illustrated using a biological dataset from the model plant Arabidopsis thaliana. A R package HMMmix is freely available on the CRAN.