We present the EpiReader, a novel model for machine comprehension of text. Machine comprehension of unstructured, real-world text is a major research goal for natural language processing. Current tests of machine comprehension pose questions whose answers can be inferred from some supporting text, and evaluate a model's response to the questions. The EpiReader is an end-to-end neural model comprising two components: the first component proposes a small set of candidate answers after comparing a question to its supporting text, and the second component formulates hypotheses using the proposed candidates and the question, then reranks the hypotheses based on their estimated concordance with the supporting text. We present experiments demonstrating that the EpiReader sets a new state-of-the-art on the CNN and Children's Book Test machine comprehension benchmarks, outperforming previous neural models by a significant margin.
Most of the details for the very recent AS Reader are provided in the description of our Extractor module in , so we do not summarize it further here. This model @cite_3 set the previous state-of-the-art on the CBT dataset.
@cite_3
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In this paper, we present a novel approach to machine reading comprehension for the MS-MARCO dataset. Unlike the SQuAD dataset that aims to answer a question with exact text spans in a passage, the MS-MARCO dataset defines the task as answering a question from multiple passages and the words in the answer are not necessary in the passages. We therefore develop an extraction-then-synthesis framework to synthesize answers from extraction results. Specifically, the answer extraction model is first employed to predict the most important sub-spans from the passage as evidence, and the answer synthesis model takes the evidence as additional features along with the question and passage to further elaborate the final answers. We build the answer extraction model with state-of-the-art neural networks for single passage reading comprehension, and propose an additional task of passage ranking to help answer extraction in multiple passages. The answer synthesis model is based on the sequence-to-sequence neural networks with extracted evidences as features. Experiments show that our extraction-then-synthesis method outperforms state-of-the-art methods. Automatic whole-brain extraction from magnetic resonance images (MRI), also known as skull stripping, is a key component in most neuroimage pipelines. As the first element in the chain, its robustness is critical for the overall performance of the system. Many skull stripping methods have been proposed, but the problem is not considered to be completely solved yet. Many systems in the literature have good performance on certain datasets (mostly the datasets they were trained tuned on), but fail to produce satisfactory results when the acquisition conditions or study populations are different. In this paper we introduce a robust, learning-based brain extraction system (ROBEX). The method combines a discriminative and a generative model to achieve the final result. The discriminative model is a Random Forest classifier trained to detect the brain boundary; the generative model is a point distribution model that ensures that the result is plausible. When a new image is presented to the system, the generative model is explored to find the contour with highest likelihood according to the discriminative model. Because the target shape is in general not perfectly represented by the generative model, the contour is refined using graph cuts to obtain the final segmentation. Both models were trained using 92 scans from a proprietary dataset but they achieve a high degree of robustness on a variety of other datasets. ROBEX was compared with six other popular, publicly available methods (BET, BSE, FreeSurfer, AFNI, BridgeBurner, and GCUT) on three publicly available datasets (IBSR, LPBA40, and OASIS, 137 scans in total) that include a wide range of acquisition hardware and a highly variable population (different age groups, healthy diseased). The results show that ROBEX provides significantly improved performance measures for almost every method dataset combination. We propose a unified model combining the strength of extractive and abstractive summarization. On the one hand, a simple extractive model can obtain sentence-level attention with high ROUGE scores but less readable. On the other hand, a more complicated abstractive model can obtain word-level dynamic attention to generate a more readable paragraph. In our model, sentence-level attention is used to modulate the word-level attention such that words in less attended sentences are less likely to be generated. Moreover, a novel inconsistency loss function is introduced to penalize the inconsistency between two levels of attentions. By end-to-end training our model with the inconsistency loss and original losses of extractive and abstractive models, we achieve state-of-the-art ROUGE scores while being the most informative and readable summarization on the CNN Daily Mail dataset in a solid human evaluation. Motivation: The abundance of biomedical literature has attracted significant interest in novel methods to automatically extract biomedical relations from the literature. Until recently, most research was focused on extracting binary relations such as protein–protein interactions and drug–disease relations. However, these binary relations cannot fully represent the original biomedical data. Therefore, there is a need for methods that can extract fine-grained and complex relations known as biomedical events. Results: In this article we propose a novel method to extract biomedical events from text. Our method consists of two phases. In the first phase, training data are mapped into structured representations. Based on that, templates are used to extract rules automatically. In the second phase, extraction methods are developed to process the obtained rules. When evaluated against the Genia event extraction abstract and full-text test datasets (Task 1), we obtain results with F-scores of 52.34 and 53.34, respectively, which are comparable to the state-of-the-art systems. Furthermore, our system achieves superior performance in terms of computational efficiency. Availability: Our source code is available for academic use at http: dl.dropbox.com u 10256952 BioEvent.zip Contact: [email protected]