Regular expression matching is essential for many applications, such as finding patterns in text, exploring substrings in large DNA sequences, or lexical analysis. However, sequential regular expression matching may be time-prohibitive for large problem sizes. In this paper, we describe a novel algorithm for parallel regular expression matching via deterministic finite automata. Furthermore, we present our tool PaREM that accepts regular expressions and finite automata as input and automatically generates the corresponding code for our algorithm that is amenable for parallel execution on shared-memory systems. We evaluate our parallel algorithm empirically by comparing it with a commonly used algorithm for sequential regular expression matching. Experiments on a dual-socket shared-memory system with 24 physical cores show speed-ups of up to 21× for 48 threads.
Mytkowicz and Schulte @cite_15 propose an approach that exploits SIMD, instruction and thread level parallelism in the context of finite state machines computations. To increase the opportunities for data-parallelism authors of [11] have devised a method for breaking data-dependencies with enumeration. This approach is not based on speculation with respect to initial state determination.
@cite_15
2147076738 2135947393 2488874620 1986834688
Modern CPUs have instructions that allow basic operations to be performed on several data elements in parallel. These instructions are called SIMD instructions, since they apply a single instruction to multiple data elements. SIMD technology was initially built into commodity processors in order to accelerate the performance of multimedia applications. SIMD instructions provide new opportunities for database engine design and implementation. We study various kinds of operations in a database context, and show how the inner loop of the operations can be accelerated using SIMD instructions. The use of SIMD instructions has two immediate performance benefits: It allows a degree of parallelism, so that many operands can be processed at once. It also often leads to the elimination of conditional branch instructions, reducing branch mispredictions.We consider the most important database operations, including sequential scans, aggregation, index operations, and joins. We present techniques for implementing these using SIMD instructions. We show that there are significant benefits in redesigning traditional query processing algorithms so that they can make better use of SIMD technology. Our study shows that using a SIMD parallelism of four, the CPU time for the new algorithms is from 10 to more than four times less than for the traditional algorithms. Superlinear speedups are obtained as a result of the elimination of branch misprediction effects. Hardware and compiler techniques for mapping data-parallel programs with divergent control flow to SIMD architectures have recently enabled the emergence of new GPGPU programming models such as CUDA, OpenCL, and DirectX Compute. The impact of branch divergence can be quite different depending upon whether the program's control flow is structured or unstructured. In this paper, we show that unstructured control flow occurs frequently in applications and can lead to significant code expansion when executed using existing approaches for handling branch divergence. This paper proposes a new technique for automatically mapping arbitrary control flow onto SIMD processors that relies on a concept of a Thread Frontier, which is a bounded region of the program containing all threads that have branched away from the current warp. This technique is evaluated on a GPU emulator configured to model i) a commodity GPU (Intel Sandybridge), and ii) custom hardware support not realized in current GPU architectures. It is shown that this new technique performs identically to the best existing method for structured control flow, and re-converges at the earliest possible point when executing unstructured control flow. This leads to i) between 1.5 - 633.2 reductions in dynamic instruction counts for several real applications, ii) simplification of the compilation process, and iii) ability to efficiently add high level unstructured programming constructs (e.g., exceptions) to existing data-parallel languages. With the use of state and memory reduction techniques in verification by explicit state enumeration, runtime becomes a major limiting factor. We describe a parallel version of the explicit state enumeration verifier Murφ for distributed memory multiprocessors and networks of workstations that is based on the message passing paradigm. In experiments with three complex cache coherence protocols, parallel Murφ shows close to linear speedups, which are largely insensitive to communication latency and bandwidth. There is some slowdown with increasing communication overhead, for which a simple yet relatively accurate approximation formula is given. Techniques to reduce overhead and required bandwidth and to allow heterogeneity and dynamically changing load in the parallel machine are discussed, which we expect will allow good speedups when using conventional networks of workstations. With the emergence of thread-level parallelism as the primary means for continued performance improvement, the programmability issue has reemerged as an obstacle to the use of architectural advances. We argue that evolving legacy libraries for dense and banded linear algebra is not a viable solution due to constraints imposed by early design decisions. We propose a philosophy of abstraction and separation of concerns that provides a promising solution in this problem domain. The first abstraction, FLASH, allows algorithms to express computation with matrices consisting of contiguous blocks, facilitating algorithms-by-blocks. Operand descriptions are registered for a particular operation a priori by the library implementor. A runtime system, SuperMatrix, uses this information to identify data dependencies between suboperations, allowing them to be scheduled to threads out-of-order and executed in parallel. But not all classical algorithms in linear algebra lend themselves to conversion to algorithms-by-blocks. We show how our recently proposed LU factorization with incremental pivoting and a closely related algorithm-by-blocks for the QR factorization, both originally designed for out-of-core computation, overcome this difficulty. Anecdotal evidence regarding the development of routines with a core functionality demonstrates how the methodology supports high productivity while experimental results suggest that high performance is abundantly achievable.