Most of the existing graph embedding methods focus on nodes, which aim to output a vector representation for each node in the graph such that two nodes being "close" on the graph are close too in the low-dimensional space. Despite the success of embedding individual nodes for graph analytics, we notice that an important concept of embedding communities (i.e., groups of nodes) is missing. Embedding communities is useful, not only for supporting various community-level applications, but also to help preserve community structure in graph embedding. In fact, we see community embedding as providing a higher-order proximity to define the node closeness, whereas most of the popular graph embedding methods focus on first-order and or second-order proximities. To learn the community embedding, we hinge upon the insight that community embedding and node embedding reinforce with each other. As a result, we propose ComEmbed, the first community embedding method, which jointly optimizes the community embedding and node embedding together. We evaluate ComEmbed on real-world data sets. We show it outperforms the state-of-the-art baselines in both tasks of node classification and community prediction.
In terms of the information to preserve, most graph embedding methods try to preserve first-order proximity and or second-order proximity @cite_1 @cite_19 @cite_6 @cite_17 . Some recent attempts consider higher-order proximity, by factorizing a higher-order node-node proximity matrix by PageRank or Katz index @cite_2 @cite_3 . Hence their higher-order proximity is based on the graph reachability via random walk, where the notion of community is missing. In contrast, our community embedding tries to preserve all the first-, second- and community-aware higher-order proximity.
@cite_1 @cite_6 @cite_3 @cite_19 @cite_2 @cite_17
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Graph embedding algorithms embed a graph into a vector space where the structure and the inherent properties of the graph are preserved. The existing graph embedding methods cannot preserve the asymmetric transitivity well, which is a critical property of directed graphs. Asymmetric transitivity depicts the correlation among directed edges, that is, if there is a directed path from u to v, then there is likely a directed edge from u to v. Asymmetric transitivity can help in capturing structures of graphs and recovering from partially observed graphs. To tackle this challenge, we propose the idea of preserving asymmetric transitivity by approximating high-order proximity which are based on asymmetric transitivity. In particular, we develop a novel graph embedding algorithm, High-Order Proximity preserved Embedding (HOPE for short), which is scalable to preserve high-order proximities of large scale graphs and capable of capturing the asymmetric transitivity. More specifically, we first derive a general formulation that cover multiple popular high-order proximity measurements, then propose a scalable embedding algorithm to approximate the high-order proximity measurements based on their general formulation. Moreover, we provide a theoretical upper bound on the RMSE (Root Mean Squared Error) of the approximation. Our empirical experiments on a synthetic dataset and three real-world datasets demonstrate that HOPE can approximate the high-order proximities significantly better than the state-of-art algorithms and outperform the state-of-art algorithms in tasks of reconstruction, link prediction and vertex recommendation. Graph Embedding methods are aimed at mapping each vertex into a low dimensional vector space, which preserves certain structural relationships among the vertices in the original graph. Recently, several works have been proposed to learn embeddings based on sampled paths from the graph, e.g., DeepWalk, Line, Node2Vec. However, their methods only preserve symmetric proximities, which could be insufficient in many applications, even the underlying graph is undirected. Besides, they lack of theoretical analysis of what exactly the relationships they preserve in their embedding space. In this paper, we propose an asymmetric proximity preserving (APP) graph embedding method via random walk with restart, which captures both asymmetric and high-order similarities between node pairs. We give theoretical analysis that our method implicitly preserves the Rooted PageRank score for any two vertices. We conduct extensive experiments on tasks of link prediction and node recommendation on open source datasets, as well as online recommendation services in Alibaba Group, in which the training graph has over 290 million vertices and 18 billion edges, showing our method to be highly scalable and effective. The graph embedding paradigm projects nodes of a graph into a vector space, which can facilitate various downstream graph analysis tasks such as node classification and clustering. To efficiently learn node embeddings from a graph, graph embedding techniques usually preserve the proximity between node pairs sampled from the graph using random walks. In the context of a heterogeneous graph, which contains nodes from different domains, classical random walks are biased towards highly visible domains where nodes are associated with a dominant number of paths. To overcome this bias, existing heterogeneous graph embedding techniques typically rely on meta-paths (i.e., fixed sequences of node types) to guide random walks. However, using these meta-paths either requires prior knowledge from domain experts for optimal meta-path selection, or requires extended computations to combine all meta-paths shorter than a predefined length. In this paper, we propose an alternative solution that does not involve any meta-path. Specifically, we propose JUST, a heterogeneous graph embedding technique using random walks with JUmp and STay strategies to overcome the aforementioned bias in an more efficient manner. JUST can not only gracefully balance between homogeneous and heterogeneous edges, it can also balance the node distribution over different domains (i.e., node types). By conducting a thorough empirical evaluation of our method on three heterogeneous graph datasets, we show the superiority of our proposed technique. In particular, compared to a state-of-the-art heterogeneous graph embedding technique Hin2vec, which tries to optimally combine all meta-paths shorter than a predefined length, our technique yields better results in most experiments, with a dramatically reduced embedding learning time (about 3x speedup). Network embedding is an important method to learn low-dimensional representations of vertexes in networks, aiming to capture and preserve the network structure. Almost all the existing network embedding methods adopt shallow models. However, since the underlying network structure is complex, shallow models cannot capture the highly non-linear network structure, resulting in sub-optimal network representations. Therefore, how to find a method that is able to effectively capture the highly non-linear network structure and preserve the global and local structure is an open yet important problem. To solve this problem, in this paper we propose a Structural Deep Network Embedding method, namely SDNE. More specifically, we first propose a semi-supervised deep model, which has multiple layers of non-linear functions, thereby being able to capture the highly non-linear network structure. Then we propose to exploit the first-order and second-order proximity jointly to preserve the network structure. The second-order proximity is used by the unsupervised component to capture the global network structure. While the first-order proximity is used as the supervised information in the supervised component to preserve the local network structure. By jointly optimizing them in the semi-supervised deep model, our method can preserve both the local and global network structure and is robust to sparse networks. Empirically, we conduct the experiments on five real-world networks, including a language network, a citation network and three social networks. The results show that compared to the baselines, our method can reconstruct the original network significantly better and achieves substantial gains in three applications, i.e. multi-label classification, link prediction and visualization.