We propose a novel probabilistic dimensionality reduction framework that can naturally integrate the generative model and the locality information of data. Based on this framework, we present a new model, which is able to learn a smooth skeleton of embedding points in a low-dimensional space from high-dimensional noisy data. The formulation of the new model can be equivalently interpreted as two coupled learning problem, i.e., structure learning and the learning of projection matrix. This interpretation motivates the learning of the embedding points that can directly form an explicit graph structure. We develop a new method to learn the embedding points that form a spanning tree, which is further extended to obtain a discriminative and compact feature representation for clustering problems. Unlike traditional clustering methods, we assume that centers of clusters should be close to each other if they are connected in a learned graph, and other cluster centers should be distant. This can greatly facilitate data visualization and scientific discovery in downstream analysis. Extensive experiments are performed that demonstrate that the proposed framework is able to obtain discriminative feature representations, and correctly recover the intrinsic structures of various real-world datasets.
GPLVM @cite_31 takes an alternative way to obtain marginal likelihood of data by marginalizing out @math and optimizing with respect to @math . Assume the prior distribution of @math as
@cite_31
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We consider full Bayesian inference in the multivariate normal mean model in the situation that the mean vector is sparse. The prior distribution on the vector of means is constructed hierarchically by first choosing a collection of nonzero means and next a prior on the nonzero values.We consider the posterior distribution in the frequentist set-up that the observations are generated according to a fixed mean vector, and are interested in the posterior distribution of the number of nonzero components and the contraction of the posterior distribution to the true mean vector. We find various combinations of priors on the number of nonzero coefficients and on these coefficients that give desirable performance. We also find priors that give suboptimal convergence, for instance, Gaussian priors on the nonzero coefficients.We illustrate the results by simulations. © 2012 Institute of Mathematical Statistics. Let @math be a nontrivial @math -ary predicate. Consider a random instance of the constraint satisfaction problem @math on @math variables with @math constraints, each being @math applied to @math randomly chosen literals. Provided the constraint density satisfies @math , such an instance is unsatisfiable with high probability. The problem is to efficiently find a proof of unsatisfiability. We show that whenever the predicate @math supports a @math - probability distribution on its satisfying assignments, the sum of squares (SOS) algorithm of degree @math (which runs in time @math ) refute a random instance of @math . In particular, the polynomial-time SOS algorithm requires @math constraints to refute random instances of CSP @math when @math supports a @math -wise uniform distribution on its satisfying assignments. Together with recent work of [LRS15], our result also implies that polynomial-size semidefinite programming relaxation for refutation requires at least @math constraints. Our results (which also extend with no change to CSPs over larger alphabets) subsume all previously known lower bounds for semialgebraic refutation of random CSPs. For every constraint predicate @math , they give a three-way hardness tradeoff between the density of constraints, the SOS degree (hence running time), and the strength of the refutation. By recent algorithmic results of [AOW15] and [RRS16], this full three-way tradeoff is , up to lower-order factors. We introduce a dynamic mechanism for the solution of analytically-tractable substructure in probabilistic programs, using conjugate priors and affine transformations to reduce variance in Monte Carlo estimators. For inference with Sequential Monte Carlo, this automatically yields improvements such as locally-optimal proposals and Rao-Blackwellization. The mechanism maintains a directed graph alongside the running program that evolves dynamically as operations are triggered upon it. Nodes of the graph represent random variables, edges the analytically-tractable relationships between them. Random variables remain in the graph for as long as possible, to be sampled only when they are used by the program in a way that cannot be resolved analytically. In the meantime, they are conditioned on as many observations as possible. We demonstrate the mechanism with a few pedagogical examples, as well as a linear-nonlinear state-space model with simulated data, and an epidemiological model with real data of a dengue outbreak in Micronesia. In all cases one or more variables are automatically marginalized out to significantly reduce variance in estimates of the marginal likelihood, in the final case facilitating a random-weight or pseudo-marginal-type importance sampler for parameter estimation. We have implemented the approach in Anglican and a new probabilistic programming language called Birch. We consider the problem of finding the minimizer of a convex function @math of the form @math where a low-rank factorization of @math is readily available. We consider the regime where @math . As second-order methods prove to be effective in finding the minimizer to a high-precision, in this work, we propose randomized Newton-type algorithms that exploit sub-sampling of @math , as well as inexact updates, as means to reduce the computational complexity. Two non-uniform sampling distributions based on block norm squares and block partial leverage scores are considered in order to capture important terms among @math . We show that at each iteration non-uniformly sampling at most @math terms from @math is sufficient to achieve a linear-quadratic convergence rate in @math when a suitable initial point is provided. In addition, we show that our algorithms achieve a lower computational complexity and exhibit more robustness and better dependence on problem specific quantities, such as the condition number, compared to similar existing methods, especially the ones based on uniform sampling. Finally, we empirically demonstrate that our methods are at least twice as fast as Newton's methods with ridge logistic regression on several real datasets.