A crucial aspect of a knowledge base population system that extracts new facts from text corpora, is the generation of training data for its relation extractors. In this paper, we present a method that maximizes the effectiveness of newly trained relation extractors at a minimal annotation cost. Manual labeling can be significantly reduced by Distant Supervision, which is a method to construct training data automatically by aligning a large text corpus with an existing knowledge base of known facts. For example, all sentences mentioning both 'Barack Obama' and 'US' may serve as positive training instances for the relation born_in(subject,object). However, distant supervision typically results in a highly noisy training set: many training sentences do not really express the intended relation. We propose to combine distant supervision with minimal manual supervision in a technique called feature labeling, to eliminate noise from the large and noisy initial training set, resulting in a significant increase of precision. We further improve on this approach by introducing the Semantic Label Propagation method, which uses the similarity between low-dimensional representations of candidate training instances, to extend the training set in order to increase recall while maintaining high precision. Our proposed strategy for generating training data is studied and evaluated on an established test collection designed for knowledge base population tasks. The experimental results show that the Semantic Label Propagation strategy leads to substantial performance gains when compared to existing approaches, while requiring an almost negligible manual annotation effort.
@cite_1 @cite_19 extract a rich list of manually designed structural, lexical, syntactic and semantic features to represent the given relation mentions. These features are cues for the decision whether the relation is present or not. Afterwards a classifier is trained on positive and negative examples. In contrast, @cite_58 @cite_28 @cite_30 represent each relation mention as an object such as an augmented token sequence or a parse tree, and use a carefully designed kernel function, e.g., subsequence kernel or a convolution tree kernel, to calculate their similarity with test patterns. These objects are usually augmented with extra features such as semantic information. With the recent success of deep neural networks in NLP, have emerged as effective relation extractors @cite_48 @cite_18 . CNNs avoid the need for preprocessing and feature design by transforming tokens into dense vectors using embeddings of words. Lexical and sentence-level features are extracted using deep neural nets. Finally, the features are fed into a soft-max classifier to predict the relationship between two marked nouns.
@cite_30 @cite_18 @cite_28 @cite_48 @cite_1 @cite_19 @cite_58
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The state-of-the-art methods used for relation classification are primarily based on statistical machine learning, and their performance strongly depends on the quality of the extracted features. The extracted features are often derived from the output of pre-existing natural language processing (NLP) systems, which leads to the propagation of the errors in the existing tools and hinders the performance of these systems. In this paper, we exploit a convolutional deep neural network (DNN) to extract lexical and sentence level features. Our method takes all of the word tokens as input without complicated pre-processing. First, the word tokens are transformed to vectors by looking up word embeddings 1 . Then, lexical level features are extracted according to the given nouns. Meanwhile, sentence level features are learned using a convolutional approach. These two level features are concatenated to form the final extracted feature vector. Finally, the features are fed into a softmax classifier to predict the relationship between two marked nouns. The experimental results demonstrate that our approach significantly outperforms the state-of-the-art methods. Relation classification is an important semantic processing task for which state-ofthe-art systems still rely on costly handcrafted features. In this work we tackle the relation classification task using a convolutional neural network that performs classification by ranking (CR-CNN). We propose a new pairwise ranking loss function that makes it easy to reduce the impact of artificial classes. We perform experiments using the the SemEval-2010 Task 8 dataset, which is designed for the task of classifying the relationship between two nominals marked in a sentence. Using CRCNN, we outperform the state-of-the-art for this dataset and achieve a F1 of 84.1 without using any costly handcrafted features. Additionally, our experimental results show that: (1) our approach is more effective than CNN followed by a softmax classifier; (2) omitting the representation of the artificial class Other improves both precision and recall; and (3) using only word embeddings as input features is enough to achieve state-of-the-art results if we consider only the text between the two target nominals. Relation classification is an important semantic processing task for which state-ofthe-art systems still rely on costly handcrafted features. In this work we tackle the relation classification task using a convolutional neural network that performs classification by ranking (CR-CNN). We propose a new pairwise ranking loss function that makes it easy to reduce the impact of artificial classes. We perform experiments using the the SemEval-2010 Task 8 dataset, which is designed for the task of classifying the relationship between two nominals marked in a sentence. Using CRCNN, we outperform the state-of-the-art for this dataset and achieve a F1 of 84.1 without using any costly handcrafted features. Additionally, our experimental results show that: (1) our approach is more effective than CNN followed by a softmax classifier; (2) omitting the representation of the artificial class Other improves both precision and recall; and (3) using only word embeddings as input features is enough to achieve state-of-the-art results if we consider only the text between the two target nominals. Abstract Biomedical relation extraction can automatically extract high-quality biomedical relations from biomedical texts, which is a vital step for the mining of biomedical knowledge hidden in the literature. Recurrent neural networks (RNNs) and convolutional neural networks (CNNs) are two major neural network models for biomedical relation extraction. Neural network-based methods for biomedical relation extraction typically focus on the sentence sequence and employ RNNs or CNNs to learn the latent features from sentence sequences separately. However, RNNs and CNNs have their own advantages for biomedical relation extraction. Combining RNNs and CNNs may improve biomedical relation extraction. In this paper, we present a hybrid model for the extraction of biomedical relations that combines RNNs and CNNs. First, the shortest dependency path (SDP) is generated based on the dependency graph of the candidate sentence. To make full use of the SDP, we divide the SDP into a dependency word sequence and a relation sequence. Then, RNNs and CNNs are employed to automatically learn the features from the sentence sequence and the dependency sequences, respectively. Finally, the output features of the RNNs and CNNs are combined to detect and extract biomedical relations. We evaluate our hybrid model using five public (protein-protein interaction) PPI corpora and a (drug-drug interaction) DDI corpus. The experimental results suggest that the advantages of RNNs and CNNs in biomedical relation extraction are complementary. Combining RNNs and CNNs can effectively boost biomedical relation extraction performance.