Reliably detecting relevant relations between entities in unstructured text is a valuable resource for knowledge extraction, which is why it has awaken significant interest in the field of Natural Language Processing. In this paper, we present a system for relation classification and extraction based on an ensemble of convolutional and recurrent neural networks that ranked first in 3 out of the 4 subtasks at SemEval 2018 Task 7. We provide detailed explanations and grounds for the design choices behind the most relevant features and analyze their importance.
Moreover, the task distinguishes between relation classification on clean data (i.e.: manually annotated entities - ) and noisy data (automatically annotated entities - ). It addresses semantic relations from 6 categories, all of them specific to scientific literature. Relation instances are to be classified into one of the following classes: USAGE, RESULT, MODEL-FEATURE, PART-WHOLE, TOPIC, COMPARE, where the first five are asymmetrical relations and the last is order-independent (see for a more detailed description of the task). Since the training data was provided by the task organizers, we focused on supervised methods for relation classification and extraction. Similar systems in the past have been based on Support Vector Machines @cite_20 @cite_1 , Na "ive Bayes @cite_21 and Conditional Random Fields @cite_14 . More recent approaches have experimented with neural network architectures @cite_18 @cite_11 , especially convolutional neural networks (CNNs) @cite_6 @cite_12 and recurrent neural networks (RNNs) based on LSTMs @cite_17 @cite_13 . The system presented in this article builds upon the latest improvements in employing neural networks for relation classification and extraction. An overview of the most relevant features is shown on Figure .
@cite_18 @cite_14 @cite_21 @cite_1 @cite_17 @cite_6 @cite_13 @cite_12 @cite_20 @cite_11
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We present a novel end-to-end neural model to extract entities and relations between them. Our recurrent neural network based model captures both word sequence and dependency tree substructure information by stacking bidirectional treestructured LSTM-RNNs on bidirectional sequential LSTM-RNNs. This allows our model to jointly represent both entities and relations with shared parameters in a single model. We further encourage detection of entities during training and use of entity information in relation extraction via entity pretraining and scheduled sampling. Our model improves over the stateof-the-art feature-based model on end-toend relation extraction, achieving 12.1 and 5.7 relative error reductions in F1score on ACE2005 and ACE2004, respectively. We also show that our LSTMRNN based model compares favorably to the state-of-the-art CNN based model (in F1-score) on nominal relation classification (SemEval-2010 Task 8). Finally, we present an extensive ablation analysis of several model components. We present a novel end-to-end neural model to extract entities and relations between them. Our recurrent neural network based model captures both word sequence and dependency tree substructure information by stacking bidirectional tree-structured LSTM-RNNs on bidirectional sequential LSTM-RNNs. This allows our model to jointly represent both entities and relations with shared parameters in a single model. We further encourage detection of entities during training and use of entity information in relation extraction via entity pretraining and scheduled sampling. Our model improves over the state-of-the-art feature-based model on end-to-end relation extraction, achieving 12.1 and 5.7 relative error reductions in F1-score on ACE2005 and ACE2004, respectively. We also show that our LSTM-RNN based model compares favorably to the state-of-the-art CNN based model (in F1-score) on nominal relation classification (SemEval-2010 Task 8). Finally, we present an extensive ablation analysis of several model components. Deep learning has gained much success in sentence-level relation classification. For example, convolutional neural networks (CNN) have delivered competitive performance without much effort on feature engineering as the conventional pattern-based methods. Thus a lot of works have been produced based on CNN structures. However, a key issue that has not been well addressed by the CNN-based method is the lack of capability to learn temporal features, especially long-distance dependency between nominal pairs. In this paper, we propose a simple framework based on recurrent neural networks (RNN) and compare it with CNN-based model. To show the limitation of popular used SemEval-2010 Task 8 dataset, we introduce another dataset refined from MIMLRE(, 2014). Experiments on two different datasets strongly indicates that the RNN-based model can deliver better performance on relation classification, and it is particularly capable of learning long-distance relation patterns. This makes it suitable for real-world applications where complicated expressions are often involved. Abstract Biomedical relation extraction can automatically extract high-quality biomedical relations from biomedical texts, which is a vital step for the mining of biomedical knowledge hidden in the literature. Recurrent neural networks (RNNs) and convolutional neural networks (CNNs) are two major neural network models for biomedical relation extraction. Neural network-based methods for biomedical relation extraction typically focus on the sentence sequence and employ RNNs or CNNs to learn the latent features from sentence sequences separately. However, RNNs and CNNs have their own advantages for biomedical relation extraction. Combining RNNs and CNNs may improve biomedical relation extraction. In this paper, we present a hybrid model for the extraction of biomedical relations that combines RNNs and CNNs. First, the shortest dependency path (SDP) is generated based on the dependency graph of the candidate sentence. To make full use of the SDP, we divide the SDP into a dependency word sequence and a relation sequence. Then, RNNs and CNNs are employed to automatically learn the features from the sentence sequence and the dependency sequences, respectively. Finally, the output features of the RNNs and CNNs are combined to detect and extract biomedical relations. We evaluate our hybrid model using five public (protein-protein interaction) PPI corpora and a (drug-drug interaction) DDI corpus. The experimental results suggest that the advantages of RNNs and CNNs in biomedical relation extraction are complementary. Combining RNNs and CNNs can effectively boost biomedical relation extraction performance.