One essential task in information extraction from the medical corpus is drug name recognition. Compared with text sources come from other domains, the medical text is special and has unique characteristics. In addition, the medical text mining poses more challenges, e.g., more unstructured text, the fast growing of new terms addition, a wide range of name variation for the same drug. The mining is even more challenging due to the lack of labeled dataset sources and external knowledge, as well as multiple token representations for a single drug name that is more common in the real application setting. Although many approaches have been proposed to overwhelm the task, some problems remained with poor F-score performance (less than 0.75). This paper presents a new treatment in data representation techniques to overcome some of those challenges. We propose three data representation techniques based on the characteristics of word distribution and word similarities as a result of word embedding training. The first technique is evaluated with the standard NN model, i.e., MLP (Multi-Layer Perceptrons). The second technique involves two deep network classifiers, i.e., DBN (Deep Belief Networks), and SAE (Stacked Denoising Encoders). The third technique represents the sentence as a sequence that is evaluated with a recurrent NN model, i.e., LSTM (Long Short Term Memory). In extracting the drug name entities, the third technique gives the best F-score performance compared to the state of the art, with its average F-score being 0.8645.
Our proposed method is based only on the data distribution pattern and vector of words characteristics, so there is no need for external knowledge nor additional handcrafted features. To overcome the multiple tokens problem, we propose a new technique which treats a target entity as a set of tokens (a tuple) at once rather than treating the target entity as a single token surrounded by other tokens such as used by @cite_11 or @cite_37 . By addressing a set of the tokens as a single sample, our proposed method can predict whether a set of tokens is a drug name or not. In our first experiment, we evaluate the first and second data representation techniques and apply MLP learning model. In our second scenario, we choose the the second technique which gave the best result with MLP, and apply it to two different machine learning methods: DBN, and SAE. In our third experiment, we examined the third data representation technique which utilizes the Euclidian distance between successive words in a certain sentence of medical text. The third data representation is then fed into an LSTM model. Based on the resulted F-score value, the second experiment gives the best performance.
@cite_37 @cite_11
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Most previous work on trainable language generation has focused on two paradigms: (a) using a generation decisions of an existing generator. Both approaches rely on the existence of a handcrafted generation component, which is likely to limit their scalability to new domains. The first contribution of this article is to present Bagel, a fully data-driven generation method that treats the language generation task as a search for the most likely sequence of semantic concepts and realization phrases, according to Factored Language Models (FLMs). As domain utterances are not readily available for most natural language generation tasks, a large creative effort is required to produce the data necessary to represent human linguistic variation for nontrivial domains. This article is based on the assumption that learning to produce paraphrases can be facilitated by collecting data from a large sample of untrained annotators using crowdsourcing—rather than a few domain experts—by relying on a coarse meaning representation. A second contribution of this article is to use crowdsourced data to show how dialogue naturalness can be improved by learning to vary the output utterances generated for a given semantic input. Two data-driven methods for generating paraphrases in dialogue are presented: (a) by sampling from the n-best list of realizations produced by Bagel's FLM reranker; and (b) by learning a structured perceptron predicting whether candidate realizations are valid paraphrases. We train Bagel on a set of 1,956 utterances produced by 137 annotators, which covers 10 types of dialogue acts and 128 semantic concepts in a tourist information system for Cambridge. An automated evaluation shows that Bagel outperforms utterance class LM baselines on this domain. A human evaluation of 600 resynthesized dialogue extracts shows that Bagel's FLM output produces utterances comparable to a handcrafted baseline, whereas the perceptron classifier performs worse. Interestingly, human judges find the system sampling from the n-best list to be more natural than a system always returning the first-best utterance. The judges are also more willing to interact with the n-best system in the future. These results suggest that capturing the large variation found in human language using data-driven methods is beneficial for dialogue interaction. Previous machine comprehension (MC) datasets are either too small to train end-to-end deep learning models, or not difficult enough to evaluate the ability of current MC techniques. The newly released SQuAD dataset alleviates these limitations, and gives us a chance to develop more realistic MC models. Based on this dataset, we propose a Multi-Perspective Context Matching (MPCM) model, which is an end-to-end system that directly predicts the answer beginning and ending points in a passage. Our model first adjusts each word-embedding vector in the passage by multiplying a relevancy weight computed against the question. Then, we encode the question and weighted passage by using bi-directional LSTMs. For each point in the passage, our model matches the context of this point against the encoded question from multiple perspectives and produces a matching vector. Given those matched vectors, we employ another bi-directional LSTM to aggregate all the information and predict the beginning and ending points. Experimental result on the test set of SQuAD shows that our model achieves a competitive result on the leaderboard. We introduce a novel schema for sequence to sequence learning with a Deep Q-Network (DQN), which decodes the output sequence iteratively. The aim here is to enable the decoder to first tackle easier portions of the sequences, and then turn to cope with difficult parts. Specifically, in each iteration, an encoder-decoder Long Short-Term Memory (LSTM) network is employed to, from the input sequence, automatically create features to represent the internal states of and formulate a list of potential actions for the DQN. Take rephrasing a natural sentence as an example. This list can contain ranked potential words. Next, the DQN learns to make decision on which action (e.g., word) will be selected from the list to modify the current decoded sequence. The newly modified output sequence is subsequently used as the input to the DQN for the next decoding iteration. In each iteration, we also bias the reinforcement learning's attention to explore sequence portions which are previously difficult to be decoded. For evaluation, the proposed strategy was trained to decode ten thousands natural sentences. Our experiments indicate that, when compared to a left-to-right greedy beam search LSTM decoder, the proposed method performed competitively well when decoding sentences from the training set, but significantly outperformed the baseline when decoding unseen sentences, in terms of BLEU score obtained. In this paper, we address the problem of multi-instance multi-label learning (MIML) where each example is associated with not only multiple instances but also multiple class labels. In our novel approach, given an MIML example, each instance in the example is only associated with a single label and the label set of the example is the aggregation of all instance labels. Many real-world tasks such as scene classification, text categorization and gene sequence encoding can be properly formalized under our proposed approach. We formulate our MIML problem as a combination of two optimizations: (1) a quadratic programming (QP) that minimizes the empirical risk with L2-norm regularization, and (2) an integer programing (IP) assigning each instance to a single label. We also present an efficient method combining the stochastic gradient decent and alternating optimization approaches to solve our QP and IP optimizations. In our experiments with both an artificially generated data set and real-world applications, i.e. scene classification and text categorization, our proposed method achieves superior performance over existing state-of-the-art MIML methods such as MIMLBOOST, MIMLSVM, M @math MIML and MIMLRBF.