Biomedical events describe complex interactions between various biomedical entities. Event trigger is a word or a phrase which typically signifies the occurrence of an event. Event trigger identification is an important first step in all event extraction methods. However many of the current approaches either rely on complex hand-crafted features or consider features only within a window. In this paper we propose a method that takes the advantage of recurrent neural network (RNN) to extract higher level features present across the sentence. Thus hidden state representation of RNN along with word and entity type embedding as features avoid relying on the complex hand-crafted features generated using various NLP toolkits. Our experiments have shown to achieve state-of-art F1-score on Multi Level Event Extraction (MLEE) corpus. We have also performed category-wise analysis of the result and discussed the importance of various features in trigger identification task.
proposed a neural network model where dependency based word embeddings within a window around the word are fed into a feed forward neural network (FFNN) @cite_1 to perform final classification. proposed another model based on convolutional neural network (CNN) where word and entity mention features of words within a window around the word are fed to a CNN to perform final classification. Although both of the methods have achieved good performance they fail to capture features outside the window.
@cite_1
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We introduce a novel, simple convolution neural network (CNN) architecture ‐ multi-group norm constraint CNN (MGNC-CNN) ‐ that capitalizes on multiple sets of word embeddings for sentence classification. MGNCCNN extracts features from input embedding sets independently and then joins these at the penultimate layer in the network to form a final feature vector. We then adopt a group regularization strategy that differentially penalizes weights associated with the subcomponents generated from the respective embedding sets. This model is much simpler than comparable alternative architectures and requires substantially less training time. Furthermore, it is flexible in that it does not require input word embeddings to be of the same dimensionality. We show that MGNC-CNN consistently outperforms baseline models. Convolutional neural network (CNN) has achieved the state-of-the-art performance in many different visual tasks. Learned from a large-scale training data set, CNN features are much more discriminative and accurate than the handcrafted features. Moreover, CNN features are also transferable among different domains. On the other hand, traditional dictionary-based features (such as BoW and spatial pyramid matching) contain much more local discriminative and structural information, which is implicitly embedded in the images. To further improve the performance, in this paper, we propose to combine CNN with dictionary-based models for scene recognition and visual domain adaptation (DA). Specifically, based on the well-tuned CNN models (e.g., AlexNet and VGG Net), two dictionary-based representations are further constructed, namely, mid-level local representation (MLR) and convolutional Fisher vector (CFV) representation. In MLR, an efficient two-stage clustering method, i.e., weighted spatial and feature space spectral clustering on the parts of a single image followed by clustering all representative parts of all images, is used to generate a class-mixture or a class-specific part dictionary. After that, the part dictionary is used to operate with the multiscale image inputs for generating mid-level representation. In CFV, a multiscale and scale-proportional Gaussian mixture model training strategy is utilized to generate Fisher vectors based on the last convolutional layer of CNN. By integrating the complementary information of MLR, CFV, and the CNN features of the fully connected layer, the state-of-the-art performance can be achieved on scene recognition and DA problems. An interested finding is that our proposed hybrid representation (from VGG net trained on ImageNet) is also complementary to GoogLeNet and or VGG-11 (trained on Place205) greatly. Despite the great success of convolutional neural networks (CNN) for the image classification task on datasets like Cifar and ImageNet, CNN's representation power is still somewhat limited in dealing with object images that have large variation in size and clutter, where Fisher Vector (FV) has shown to be an effective encoding strategy. FV encodes an image by aggregating local descriptors with a universal generative Gaussian Mixture Model (GMM). FV however has limited learning capability and its parameters are mostly fixed after constructing the codebook. To combine together the best of the two worlds, we propose in this paper a neural network structure with FV layer being part of an end-to-end trainable system that is differentiable; we name our network FisherNet that is learnable using backpropagation. Our proposed FisherNet combines convolutional neural network training and Fisher Vector encoding in a single end-to-end structure. We observe a clear advantage of FisherNet over plain CNN and standard FV in terms of both classification accuracy and computational efficiency on the challenging PASCAL VOC object classification task. We propose MVCNN, a convolution neural network (CNN) architecture for sentence classification. It (i) combines diverse versions of pretrained word embeddings and (ii) extracts features of multigranular phrases with variable-size convolution filters. We also show that pretraining MVCNN is critical for good performance. MVCNN achieves state-of-the-art performance on four tasks: on small-scale binary, small-scale multi-class and largescale Twitter sentiment prediction and on subjectivity classification.