CoCoE stands for Complexity, Coherence and Entropy, and presents an extensible methodology for empirical analysis of Linked Open Data (i.e., RDF graphs). CoCoE can offer answers to questions like: Is dataset A better than B for knowledge discovery since it is more complex and informative?, Is dataset X better than Y for simple value lookups due its flatter structure?, etc. In order to address such questions, we introduce a set of well-founded measures based on complementary notions from distributional semantics, network analysis and information theory. These measures are part of a specific implementation of the CoCoE methodology that is available for download. Last but not least, we illustrate CoCoE by its application to selected biomedical RDF datasets.
The clustering method introduced here builds on principles similar to k-hop clustering @cite_0 . Another related approach is nonparametric hierarchical link clustering @cite_8 , which is more general and sophisticated than our simple method, yet its Python implementation we have experimented with proved to be intractable when used in our experiments. A comprehensive overview of semantic similarity measures applicable in is provided in @cite_12 . The similarities used in our experiments were the cosine and Wu-Palmer ones, chosen as representatives of the vector space-based and taxonomy-based similarity types.
@cite_0 @cite_12 @cite_8
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Hashing methods have been widely used for approximate nearest neighbor search in recent years due to its computational and storage effectiveness. Most existing multimodal hashing methods try to preserve the similarity relationship based on either metric distances or semantic labels in a procrustean way, while ignoring the intra-class and inter-class variations inherent in the metric space. In this paper, we propose a novel multimodal hashing method, termed as semantic neighbor graph hashing (SNGH), which aims to preserve the fine-grained similarity metric based on the semantic graph that is constructed by jointly pursuing the semantic supervision and the local neighborhood structure. Specifically, the semantic graph is constructed to capture the local similarity structure for the image modality and the text modality, respectively. Furthermore, we define a function based on the local similarity in particular to adaptively calculate multi-level similarities by encoding the intra-class and inter-class variations. After obtaining the unified hash codes, the logistic regression with kernel trick is employed to learn view-specific hash functions independently for each modality. Extensive experiments are conducted on four widely used multimodal data sets. The experimental results demonstrate the superiority of the proposed SNGH method compared with the state-of-the-art multimodal hashing methods. We introduce an approach to learn discriminative visual representations while exploiting external semantic knowledge about object category relationships. Given a hierarchical taxonomy that captures semantic similarity between the objects, we learn a corresponding tree of metrics (ToM). In this tree, we have one metric for each non-leaf node of the object hierarchy, and each metric is responsible for discriminating among its immediate subcategory children. Specifically, a Mahalanobis metric learned for a given node must satisfy the appropriate (dis)similarity constraints generated only among its subtree members' training instances. To further exploit the semantics, we introduce a novel regularizer coupling the metrics that prefers a sparse disjoint set of features to be selected for each metric relative to its ancestor (supercategory) nodes' metrics. Intuitively, this reflects that visual cues most useful to distinguish the generic classes (e.g., feline vs. canine) should be different than those cues most useful to distinguish their component fine-grained classes (e.g., Persian cat vs. Siamese cat). We validate our approach with multiple image datasets using the WordNet taxonomy, show its advantages over alternative metric learning approaches, and analyze the meaning of attribute features selected by our algorithm. We present a new method for clustering based on compression. The method does not use subject-specific features or background knowledge, and works as follows: First, we determine a parameter-free, universal, similarity distance, the normalized compression distance or NCD, computed from the lengths of compressed data files (singly and in pairwise concatenation). Second, we apply a hierarchical clustering method. The NCD is not restricted to a specific application area, and works across application area boundaries. A theoretical precursor, the normalized information distance, co-developed by one of the authors, is provably optimal. However, the optimality comes at the price of using the noncomputable notion of Kolmogorov complexity. We propose axioms to capture the real-world setting, and show that the NCD approximates optimality. To extract a hierarchy of clusters from the distance matrix, we determine a dendrogram (ternary tree) by a new quartet method and a fast heuristic to implement it. The method is implemented and available as public software, and is robust under choice of different compressors. To substantiate our claims of universality and robustness, we report evidence of successful application in areas as diverse as genomics, virology, languages, literature, music, handwritten digits, astronomy, and combinations of objects from completely different domains, using statistical, dictionary, and block sorting compressors. In genomics, we presented new evidence for major questions in Mammalian evolution, based on whole-mitochondrial genomic analysis: the Eutherian orders and the Marsupionta hypothesis against the Theria hypothesis. We introduce a method that enables scalable similarity search for learned metrics. Given pairwise similarity and dissimilarity constraints between some examples, we learn a Mahalanobis distance function that captures the examples' underlying relationships well. To allow sublinear time similarity search under the learned metric, we show how to encode the learned metric parameterization into randomized locality-sensitive hash functions. We further formulate an indirect solution that enables metric learning and hashing for vector spaces whose high dimensionality makes it infeasible to learn an explicit transformation over the feature dimensions. We demonstrate the approach applied to a variety of image data sets, as well as a systems data set. The learned metrics improve accuracy relative to commonly used metric baselines, while our hashing construction enables efficient indexing with learned distances and very large databases.