The in-memory graph layout or organization has a considerable impact on the time and energy efficiency of distributed memory graph computations. It affects memory locality, inter-task load balance, communication time, and overall memory utilization. Graph layout could refer to partitioning or replication of vertex and edge arrays, selective replication of data structures that hold meta-data, and reordering vertex and edge identifiers. In this work, we present DGL, a fast, parallel, and memory-efficient distributed graph layout strategy that is specifically designed for small-world networks (low-diameter graphs with skewed vertex degree distributions). Label propagation-based partitioning and a scalable BFS-based ordering are the main steps in the layout strategy. We show that the DGL layout can significantly improve end-to-end performance of five challenging graph analytics workloads: PageRank, a parallel subgraph enumeration program, tuned implementations of breadth-first search and single-source shortest paths, and RDF3X-MPI, a distributed SPARQL query processing engine. Using these benchmarks, we additionally offer a comprehensive analysis on how graph layout affects the performance of graph analytics with variable computation and communication characteristics.
In addition to RCM ordering, Cuthill-McKee (CM) @cite_53 , nested dissection @cite_37 , and Approximate Minimum Degree (AMD) @cite_33 are a few examples of sparse matrix reordering strategies used in the past. Some techniques, such as space-filling curves @cite_41 or spectral bisection and orderings based on calculated eigenvectors @cite_50 have been utilized for both partitioning and ordering of sparse matrices. Ordering methods on irregular networks such as social and Internet graphs has been studied for the purposes of visualization @cite_62 and compression @cite_25 @cite_11 . Although the authors know of no performance analysis of the effects of applying these ordering techniques to distributed graph computation in literature, promising future work might involve utilizing and optimizes these ordering for such purposes.
@cite_37 @cite_62 @cite_33 @cite_41 @cite_53 @cite_50 @cite_25 @cite_11
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Recovering low-rank and sparse matrices from incomplete or corrupted observations is an important problem in statistics, machine learning, computer vision, as well as signal and image processing. In theory, this problem can be solved by the natural convex joint mixed relaxations (i.e., l 1 -norm and trace norm) under certain conditions. However, all current provable algorithms suffer from superlinear per-iteration cost, which severely limits their applicability to large-scale problems. In this paper, we propose a scalable, provable and structured robust bilinear factorization (RBF) method to recover low-rank and sparse matrices from missing and grossly corrupted data, i.e., robust matrix completion (RMC), or incomplete and grossly corrupted measurements, i.e., compressive principal component pursuit (CPCP). Specifically, we first present two small-scale matrix trace norm regularized bilinear factorization models for RMC and CPCP problems, in which repetitively calculating SVD of a large-scale matrix is replaced by updating two much smaller factor matrices. Then, we apply the alternating direction method of multipliers (ADMM) to efficiently solve the RMC problems. Finally, we provide the convergence analysis of our algorithm, and extend it to address general CPCP problems. Experimental results verified both the efficiency and effectiveness of our method compared with the state-of-the-art methods. In this paper we present a parallel formulation of the multilevel graph partitioning and sparse matrix ordering algorithm. A key feature of our parallel formulation (that distinguishes it from other proposed parallel formulations of multilevel algorithms) is that it partitions the vertices of the graph intopparts while distributing the overall adjacency matrix of the graph among allpprocessors. This mapping results in substantially smaller communication than one-dimensional distribution for graphs with relatively high degree, especially if the graph is randomly distributed among the processors. We also present a parallel algorithm for computing a minimal cover of a bipartite graph which is a key operation for obtaining a small vertex separator that is useful for computing the fill reducing ordering of sparse matrices. Our parallel algorithm achieves a speedup of up to 56 on 128 processors for moderate size problems, further reducing the already moderate serial run time of multilevel schemes. Furthermore, the quality of the produced partitions and orderings are comparable to those produced by the serial multilevel algorithm that has been shown to outperform both spectral partitioning and multiple minimum degree. We give an approximation algorithm for non-uniform sparsest cut with the following guarantee: For any @math , given cost and demand graphs with edge weights @math respectively, we can find a set @math with @math at most @math times the optimal non-uniform sparsest cut value, in time @math provided @math . Here @math is the @math 'th smallest generalized eigenvalue of the Laplacian matrices of cost and demand graphs; @math (resp. @math ) is the weight of edges crossing the @math cut in cost (resp. demand) graph and @math is the sparsity of the optimal cut. In words, we show that the non-uniform sparsest cut problem is easy when the generalized spectrum grows moderately fast. To the best of our knowledge, there were no results based on higher order spectra for non-uniform sparsest cut prior to this work. Even for uniform sparsest cut, the quantitative aspects of our result are somewhat stronger than previous methods. Similar results hold for other expansion measures like edge expansion, normalized cut, and conductance, with the @math 'th smallest eigenvalue of the normalized Laplacian playing the role of @math in the latter two cases. Our proof is based on an l1-embedding of vectors from a semi-definite program from the Lasserre hierarchy. The embedded vectors are then rounded to a cut using standard threshold rounding. We hope that the ideas connecting @math -embeddings to Lasserre SDPs will find other applications. Another aspect of the analysis is the adaptation of the column selection paradigm from our earlier work on rounding Lasserre SDPs [GS11] to pick a set of edges rather than vertices. This feature is important in order to extend the algorithms to non-uniform sparsest cut. This paper addresses the problem of exactly inferring the maximum a posteriori solutions of discrete multi-label MRFs or CRFs with higher order cliques. We present a framework to transform special classes of multi-label higher order functions to submodular second order Boolean functions (referred to as Fs 2), which can be minimized exactly using graph cuts and we characterize those classes. The basic idea is to use two or more Boolean variables to encode the states of a single multi-label variable. There are many ways in which this can be done and much interesting research lies in finding ways which are optimal or minimal in some sense. We study the space of possible encodings and find the ones that can transform the most general class of functions to Fs 2. Our main contributions are two-fold. First, we extend the subclass of submodular energy functions that can be minimized exactly using graph cuts. Second, we show how higher order potentials can be used to improve single view 3D reconstruction results. We believe that our work on exact minimization of higher order energy functions will lead to similar improvements in solutions of other labelling problems.