We propose a fully-automated method for accurate and robust detection and segmentation of potentially cancerous lesions found in the liver and in lymph nodes. The process is performed in three steps, including organ detection, lesion detection and lesion segmentation. Our method applies machine learning techniques such as marginal space learning and convolutional neural networks, as well as active contour models. The method proves to be robust in its handling of extremely high lesion diversity. We tested our method on volumetric computed tomography (CT) images, including 42 volumes containing liver lesions and 86 volumes containing 595 pathological lymph nodes. Preliminary results under 10-fold cross validation show that for both the liver lesions and the lymph nodes, a total detection sensitivity of 0.53 and average Dice score of @math for segmentation were obtained.
Previous work directed toward automatic lymph node detection is limited @cite_8 @cite_3 . A special filter was used in @cite_3 to detect lymph nodes. This minimum directional difference (Min-DD) filter is constructed with the assumption that lymph nodes have uniform intensity, which is not always the case. The Min-DD filter method @cite_3 was improved in @cite_8 by adding a Hessian-based blobness measure for reducing false positives. Several automatic algorithms have been proposed for liver lesion detection and segmentation, including combinations of adaptive multi-thresholding and morphological operators @cite_4 or k-means clustering on mean shift filtered images @cite_0 . However, these histogram-based methods require a good contrast between lesions and parenchyma. Other techniques, such as AdaBoost, have been used in both semi-automatic approaches @cite_2 and in automatic settings to classify image textures @cite_11 . In another approach, Shimizu @cite_5 trained two AdaBoost classifiers with a set of statistical and gradient features, as well as with features based on a convergence index filter that enhances blob-like structures. Our work is innovative due to the following:
@cite_4 @cite_8 @cite_3 @cite_0 @cite_2 @cite_5 @cite_11
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This paper presents a method for extracting lymph node regions from 3-D abdominal CT images using 3-D minimum directional difference filter. In the case of surgery of colonic cancer, resection of metastasis lesions is performed with resection of a primary lesion. Lymph nodes are main route of metastasis and are quite important for deciding resection area. Diagnosis of enlarged lymph nodes is quite important process for surgical planning. However, manual detection of enlarged lymph nodes on CT images is quite burden task. Thus, development of lymph node detection process is very helpful for assisting such surgical planning task. Although there are several report that present lymph node detection, these methods detect lymph nodes primary from PET images or detect in 2-D image processing way. There is no method that detects lymph nodes directly from 3-D images. The purpose of this paper is to show an automated method for detecting lymph nodes from 3-D abdominal CT images. This method employs a 3-D minimum directional difference filter for enhancing blob structures with suppressing line structures. After that, false positive regions caused by residua and vein are eliminated using several kinds of information such as size, blood vessels, air in the colon. We applied the proposed method to three cases of 3-D abdominal CT images. The experimental results showed that the proposed method could detect 57.0 of enlarged lymph nodes with 58 FPs per case. The objective of this work was to develop and validate algorithms for detection and classification of hypodense hepatic lesions, specifically cysts, hemangiomas, and metastases from CT scans in the portal venous phase of enhancement. Fifty-six CT sections from 51 patients were used as representative of common hypodense liver lesions, including 22 simple cysts, 11 hemangiomas, 22 metastases, and 1 image containing both a cyst and a hemangioma. The detection algorithm uses intensity-based histogram methods to find central lesions, followed by liver contour refinement to identify peripheral lesions. The classification algorithm operates on the focal lesions identified during detection, and includes shape-based segmentation, edge pixel weighting, and lesion texture filtering. Support vector machines are then used to perform a pair-wise lesion classification. For the detection algorithm, 80 lesion sensitivity was achieved at approximately 0.3 false positives (FP) per slice for central lesions, and 0.5 FP per slice for peripheral lesions, giving a total of 0.8 FP per section. For 90 sensitivity, the total number of FP rises to about 2.2 per section. The pair-wise classification yielded good discrimination between cysts and metastases (at 95 sensitivity for detection of metastases, only about 5 of cysts are incorrectly classified as metastases), perfect discrimination between hemangiomas and cysts, and was least accurate in discriminating between hemangiomas and metastases (at 90 sensitivity for detection of hemangiomas, about 28 of metastases were incorrectly classified as hemangiomas). Initial implementations of our algorithms are promising for automating liver lesion detection and classification. Automated computer-aided detection (CADe) has been an important tool in clinical practice and research. State-of-the-art methods often show high sensitivities at the cost of high false-positives (FP) per patient rates. We design a two-tiered coarse-to-fine cascade framework that first operates a candidate generation system at sensitivities @math of but at high FP levels. By leveraging existing CADe systems, coordinates of regions or volumes of interest (ROI or VOI) are generated and function as input for a second tier, which is our focus in this study. In this second stage, we generate 2D (two-dimensional) or 2.5D views via sampling through scale transformations, random translations and rotations. These random views are used to train deep convolutional neural network (ConvNet) classifiers. In testing, the ConvNets assign class (e.g., lesion, pathology) probabilities for a new set of random views that are then averaged to compute a final per-candidate classification probability. This second tier behaves as a highly selective process to reject difficult false positives while preserving high sensitivities. The methods are evaluated on three data sets: 59 patients for sclerotic metastasis detection, 176 patients for lymph node detection, and 1,186 patients for colonic polyp detection. Experimental results show the ability of ConvNets to generalize well to different medical imaging CADe applications and scale elegantly to various data sets. Our proposed methods improve performance markedly in all cases. Sensitivities improved from 57 to 70 , 43 to 77 , and 58 to 75 at 3 FPs per patient for sclerotic metastases, lymph nodes and colonic polyps, respectively. Importance Application of deep learning algorithms to whole-slide pathology images can potentially improve diagnostic accuracy and efficiency. Objective Assess the performance of automated deep learning algorithms at detecting metastases in hematoxylin and eosin–stained tissue sections of lymph nodes of women with breast cancer and compare it with pathologists’ diagnoses in a diagnostic setting. Design, Setting, and Participants Researcher challenge competition (CAMELYON16) to develop automated solutions for detecting lymph node metastases (November 2015-November 2016). A training data set of whole-slide images from 2 centers in the Netherlands with (n = 110) and without (n = 160) nodal metastases verified by immunohistochemical staining were provided to challenge participants to build algorithms. Algorithm performance was evaluated in an independent test set of 129 whole-slide images (49 with and 80 without metastases). The same test set of corresponding glass slides was also evaluated by a panel of 11 pathologists with time constraint (WTC) from the Netherlands to ascertain likelihood of nodal metastases for each slide in a flexible 2-hour session, simulating routine pathology workflow, and by 1 pathologist without time constraint (WOTC). Exposures Deep learning algorithms submitted as part of a challenge competition or pathologist interpretation. Main Outcomes and Measures The presence of specific metastatic foci and the absence vs presence of lymph node metastasis in a slide or image using receiver operating characteristic curve analysis. The 11 pathologists participating in the simulation exercise rated their diagnostic confidence as definitely normal, probably normal, equivocal, probably tumor, or definitely tumor. Results The area under the receiver operating characteristic curve (AUC) for the algorithms ranged from 0.556 to 0.994. The top-performing algorithm achieved a lesion-level, true-positive fraction comparable with that of the pathologist WOTC (72.4 [95 CI, 64.3 -80.4 ]) at a mean of 0.0125 false-positives per normal whole-slide image. For the whole-slide image classification task, the best algorithm (AUC, 0.994 [95 CI, 0.983-0.999]) performed significantly better than the pathologists WTC in a diagnostic simulation (mean AUC, 0.810 [range, 0.738-0.884]; P Conclusions and Relevance In the setting of a challenge competition, some deep learning algorithms achieved better diagnostic performance than a panel of 11 pathologists participating in a simulation exercise designed to mimic routine pathology workflow; algorithm performance was comparable with an expert pathologist interpreting whole-slide images without time constraints. Whether this approach has clinical utility will require evaluation in a clinical setting.