Distance plays a fundamental role in measuring similarity between objects. Various visualization techniques and learning tasks in statistics and machine learning such as shape matching, classification, dimension reduction and clustering often rely on some distance or similarity measure. It is of tremendous importance to have a distance that can incorporate the underlying structure of the object. In this paper, we focus on proposing such a distance between network objects. Our key insight is to define a distance based on the long term diffusion behavior of the whole network. We first introduce a dynamic system on graphs called Laplacian flow. Based on this Laplacian flow, a new version of diffusion distance between networks is proposed. We will demonstrate the utility of the distance and its advantage over various existing distances through explicit examples. The distance is also applied to subsequent learning tasks such as clustering network objects.
Let @math be a network or graph with @math nodes with its adjacency matrix @math , which is an @math matrix. For a binary network, @math if node @math and @math has an observed edge between two nodes and @math otherwise for @math . The graph Laplacian of a graph @math is defined as @math , where @math is a degree matrix such that @math for @math and @math otherwise @cite_11 .
@cite_11
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We propose a fast methodology for encoding graphs with information-theoretically minimum numbers of bits. Specifically, a graph with property @math is called a @math -graph . If @math satisfies certain properties, then an n-node m-edge @math -graph G can be encoded by a binary string X such that (1) G and X can be obtained from each other in O(n log n) time, and (2) X has at most @math bits for any continuous superadditive function @math so that there are at most @math distinct @math -node @math -graphs. The methodology is applicable to general classes of graphs; this paper focuses on planar graphs. Examples of such @math include all conjunctions over the following groups of properties: (1) G is a planar graph or a plane graph; (2) @math is directed or undirected; (3) @math is triangulated, triconnected, biconnected, merely connected, or not required to be connected; (4) the nodes of G are labeled with labels from @math for @math ; (5) the edges of G are labeled with labels from @math for @math ; and (6) each node (respectively, edge) of G has at most @math self-loops (respectively, @math multiple edges). Moreover, @math and @math are not required to be O(1) for the cases of @math being a plane triangulation. These examples are novel applications of small cycle separators of planar graphs and are the only nontrivial classes of graphs, other than rooted trees, with known polynomial-time information-theoretically optimal coding schemes. For a pattern graph @math on @math nodes, we consider the problems of finding and counting the number of (not necessarily induced) copies of @math in a given large graph @math on @math nodes, as well as finding minimum weight copies in both node-weighted and edge-weighted graphs. Our results include the following: 1. The number of copies of an @math with an independent set of size @math can be computed exactly in @math time and @math space, or in @math time and @math space. (The @math notation omits @math factors.) To obtain these algorithms we provide fast algorithms for computing the permanent of a @math matrix over rings and semirings. 2. The number of copies of any @math having minimum (or maximum) node-weight (with arbitrary real weights on nodes) can be found in @math time, where @math is the matrix multiplication exponent and @math is divisible by @math . Similar results hold for other values of @math . Also, the number... Given an undirected graph @math , it is known that its edge-connectivity @math can be computed by solving @math max-flow problems. The best time bounds known for the problem are @math , due to Matula (28th IEEE Symposium on the Foundations of Computer Science, 1987, pp. 249–251) if G is simple, and @math , due to Even and Tarjan (SIAM J. Comput., 4 (1975), pp. 507–518) if G is multiple.An @math time algorithm for computing the edge-connectivity @math of a multigraph @math , where @math is the number of pairs of nodes between which G has an edge, is proposed. This algorithm does not use any max-flow algorithm but consists only of @math times of graph searches and edge contractions. This method is then extended to a capacitated network to compute its minimum cut capacity in @math time. We consider the problem of clustering a graph @math into two communities by observing a subset of the vertex correlations. Specifically, we consider the inverse problem with observed variables @math , where @math is the incidence matrix of a graph @math , @math is the vector of unknown vertex variables (with a uniform prior), and @math is a noise vector with Bernoulli @math i.i.d. entries. All variables and operations are Boolean. This model is motivated by coding, synchronization, and community detection problems. In particular, it corresponds to a stochastic block model or a correlation clustering problem with two communities and censored edges. Without noise, exact recovery (up to global flip) of @math is possible if and only the graph @math is connected, with a sharp threshold at the edge probability @math for Erdős-Renyi random graphs. The first goal of this paper is to determine how the edge probability @math needs to scale to allow exact recovery in the presence of noise. Defining the degree rate of the graph by @math , it is shown that exact recovery is possible if and only if @math . In other words, @math is the information theoretic threshold for exact recovery at low-SNR. In addition, an efficient recovery algorithm based on semidefinite programming is proposed and shown to succeed in the threshold regime up to twice the optimal rate. For a deterministic graph @math , defining the degree rate as @math , where @math is the minimum degree of the graph, it is shown that the proposed method achieves the rate @math , where @math is the spectral gap of the graph @math .