Identifying relationships between concepts is a key aspect of scientific knowledge synthesis. Finding these links often requires a researcher to laboriously search through scien- tific papers and databases, as the size of these resources grows ever larger. In this paper we describe how distributional semantics can be used to unify structured knowledge graphs with unstructured text to predict new relationships between medical concepts, using a probabilistic generative model. Our approach is also designed to ameliorate data sparsity and scarcity issues in the medical domain, which make language modelling more challenging. Specifically, we integrate the medical relational database (SemMedDB) with text from electronic health records (EHRs) to perform knowledge graph completion. We further demonstrate the ability of our model to predict relationships between tokens not appearing in the relational database.
Neural language models @cite_4 are an approach to learning embeddings which use a word's representation to its surrounding context. This relies on the fact that words with similar meanings have similar contexts (the distributional hypothesis of language @cite_9 ), which forces their representations to be similar. Intriguingly, it was observed @cite_10 @cite_19 that the geometry of the resulting space preserved between terms. An example is a consistent offset vector existing between Berlin' and Germany', and Dublin' and Ireland', seemingly representing the relationship capital city of country . This property has been exploited to perform knowledge-base completion, for example @cite_19 @cite_11 @cite_16 , however these approaches have restricted their attention to edge-discovery a knowledge graph. To such a graph we therefore developed a model @cite_8 which can combine structured and unstructured data sources while explicitly modelling the types of relationships present in the structured data.
@cite_4 @cite_8 @cite_9 @cite_19 @cite_16 @cite_10 @cite_11
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Neural language models are a powerful tool to embed words into semantic vector spaces. However, learning such models generally relies on the availability of abundant and diverse training examples. In highly specialised domains this requirement may not be met due to difficulties in obtaining a large corpus, or the limited range of expression in average use. Such domains may encode prior knowledge about entities in a knowledge base or ontology. We propose a generative model which integrates evidence from diverse data sources, enabling the sharing of semantic information. We achieve this by generalising the concept of co-occurrence from distributional semantics to include other relationships between entities or words, which we model as affine transformations on the embedding space. We demonstrate the effectiveness of this approach by outperforming recent models on a link prediction task and demonstrating its ability to profit from partially or fully unobserved data training labels. We further demonstrate the usefulness of learning from different data sources with overlapping vocabularies. We consider learning representations of entities and relations in KBs using the neural-embedding approach. We show that most existing models, including NTN (, 2013) and TransE (, 2013b), can be generalized under a unified learning framework, where entities are low-dimensional vectors learned from a neural network and relations are bilinear and or linear mapping functions. Under this framework, we compare a variety of embedding models on the link prediction task. We show that a simple bilinear formulation achieves new state-of-the-art results for the task (achieving a top-10 accuracy of 73.2 vs. 54.7 by TransE on Freebase). Furthermore, we introduce a novel approach that utilizes the learned relation embeddings to mine logical rules such as "BornInCity(a,b) and CityInCountry(b,c) => Nationality(a,c)". We find that embeddings learned from the bilinear objective are particularly good at capturing relational semantics and that the composition of relations is characterized by matrix multiplication. More interestingly, we demonstrate that our embedding-based rule extraction approach successfully outperforms a state-of-the-art confidence-based rule mining approach in mining Horn rules that involve compositional reasoning. Abstract: We consider learning representations of entities and relations in KBs using the neural-embedding approach. We show that most existing models, including NTN (, 2013) and TransE (, 2013b), can be generalized under a unified learning framework, where entities are low-dimensional vectors learned from a neural network and relations are bilinear and or linear mapping functions. Under this framework, we compare a variety of embedding models on the link prediction task. We show that a simple bilinear formulation achieves new state-of-the-art results for the task (achieving a top-10 accuracy of 73.2 vs. 54.7 by TransE on Freebase). Furthermore, we introduce a novel approach that utilizes the learned relation embeddings to mine logical rules such as "BornInCity(a,b) and CityInCountry(b,c) => Nationality(a,c)". We find that embeddings learned from the bilinear objective are particularly good at capturing relational semantics and that the composition of relations is characterized by matrix multiplication. More interestingly, we demonstrate that our embedding-based rule extraction approach successfully outperforms a state-of-the-art confidence-based rule mining approach in mining Horn rules that involve compositional reasoning. Recurrent neural networks (RNNs) have achieved state-of-the-art performances in many natural language processing tasks, such as language modeling and machine translation. However, when the vocabulary is large, the RNN model will become very big (e.g., possibly beyond the memory capacity of a GPU device) and its training will become very inefficient. In this work, we propose a novel technique to tackle this challenge. The key idea is to use 2-Component (2C) shared embedding for word representations. We allocate every word in the vocabulary into a table, each row of which is associated with a vector, and each column associated with another vector. Depending on its position in the table, a word is jointly represented by two components: a row vector and a column vector. Since the words in the same row share the row vector and the words in the same column share the column vector, we only need @math vectors to represent a vocabulary of @math unique words, which are far less than the @math vectors required by existing approaches. Based on the 2-Component shared embedding, we design a new RNN algorithm and evaluate it using the language modeling task on several benchmark datasets. The results show that our algorithm significantly reduces the model size and speeds up the training process, without sacrifice of accuracy (it achieves similar, if not better, perplexity as compared to state-of-the-art language models). Remarkably, on the One-Billion-Word benchmark Dataset, our algorithm achieves comparable perplexity to previous language models, whilst reducing the model size by a factor of 40-100, and speeding up the training process by a factor of 2. We name our proposed algorithm to reflect its very small model size and very high training speed.