This paper focuses on density-based clustering, particularly the Density Peak (DP) algorithm and the one based on density-connectivity DBSCAN; and proposes a new method which takes advantage of the individual strengths of these two methods to yield a density-based hierarchical clustering algorithm. Our investigation begins with formally defining the types of clusters DP and DBSCAN are designed to detect; and then identifies the kinds of distributions that DP and DBSCAN individually fail to detect all clusters in a dataset. These identified weaknesses inspire us to formally define a new kind of clusters and propose a new method called DC-HDP to overcome these weaknesses to identify clusters with arbitrary shapes and varied densities. In addition, the new method produces a richer clustering result in terms of hierarchy or dendrogram for better cluster structures understanding. Our empirical evaluation results show that DC-HDP produces the best clustering results on 14 datasets in comparison with 7 state-of-the-art clustering algorithms.
Many variants of DBSCAN have been attempted to overcome the weakness of detecting clusters with varied densities. OPTICS @cite_21 draws a reachability'' plot based on the @math -nearest neighbour distance. In the @math -axis of the plot, adjacent points follow close to each other such that point @math is the closest to @math in terms of the reachability distance'' The reachability-distance'' of object @math to object @math is the greater one between the core distance'' of @math and the distance between @math and @math . The core distance'' of @math is the minimum @math that makes @math a core'' object (the distance to its @math -nearest neighbour, @math ). . The reachability distance for each point is shown in @math -axis. Since clusters centre normally has a higher density or lower reachability distance than the cluster boundaries, each cluster is visible as a valley'' in this plot. Then a hierarchical method can be used to extract different clusters. The overall clustering performance depends on the hierarchical method employed on the reachability plot.
@cite_21
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Clustering is one of the basic data mining tasks that can be used to extract hidden information from data in the absence of target classes. One of the most well-known density based clustering algorithms for processing spatial data is Density-Based Spatial Clustering of Application with Noise (DBSCAN) that uses learning parameters epsiv and minPts to define the density that will be sought in the data set while forming the clusters. The major drawbacks of the DBSCAN algorithm are its sensitivity to user input required to execute the algorithm, inability to recognize clusters with different densities, and computational complexity. In this study, we propose a three-level clustering method to address the second issue. The first level selects appropriate grids so that the density is homogeneous in each grid. The second stage merges cells with similar densities and identifies the most suitable values of epsiv and minPts in each grid that remain after merging. The third step of the proposed method executes the DBSCAN method with these identified parameters in the dataset. The proposed method is tested in three artificial benchmark data sets to demonstrate that the clusters are correctly identified. There has been much progress on efficient algorithms for clustering data points generated by a mixture of @math probability distributions under the assumption that the means of the distributions are well-separated, i.e., the distance between the means of any two distributions is at least @math standard deviations. These results generally make heavy use of the generative model and particular properties of the distributions. In this paper, we show that a simple clustering algorithm works without assuming any generative (probabilistic) model. Our only assumption is what we call a "proximity condition": the projection of any data point onto the line joining its cluster center to any other cluster center is @math standard deviations closer to its own center than the other center. Here the notion of standard deviations is based on the spectral norm of the matrix whose rows represent the difference between a point and the mean of the cluster to which it belongs. We show that in the generative models studied, our proximity condition is satisfied and so we are able to derive most known results for generative models as corollaries of our main result. We also prove some new results for generative models - e.g., we can cluster all but a small fraction of points only assuming a bound on the variance. Our algorithm relies on the well known @math -means algorithm, and along the way, we prove a result of independent interest -- that the @math -means algorithm converges to the "true centers" even in the presence of spurious points provided the initial (estimated) centers are close enough to the corresponding actual centers and all but a small fraction of the points satisfy the proximity condition. Finally, we present a new technique for boosting the ratio of inter-center separation to standard deviation. Clustering algorithms are attractive for the task of class identification in spatial databases. However, the application to large spatial databases rises the following requirements for clustering algorithms: minimal requirements of domain knowledge to determine the input parameters, discovery of clusters with arbitrary shape and good efficiency on large databases. The well-known clustering algorithms offer no solution to the combination of these requirements. In this paper, we present the new clustering algorithm DBSCAN relying on a density-based notion of clusters which is designed to discover clusters of arbitrary shape. DBSCAN requires only one input parameter and supports the user in determining an appropriate value for it. We performed an experimental evaluation of the effectiveness and efficiency of DBSCAN using synthetic data and real data of the SEQUOIA 2000 benchmark. The results of our experiments demonstrate that (1) DBSCAN is significantly more effective in discovering clusters of arbitrary shape than the well-known algorithm CLARANS, and that (2) DBSCAN outperforms CLARANS by a factor of more than 100 in terms of efficiency. When clusters with different densities and noise lie in a spatial point set, the major obstacle to classifying these data is the determination of the thresholds for classification, which may form a series of bins for allocating each point to different clusters. Much of the previous work has adopted a model-based approach, but is either incapable of estimating the thresholds in an automatic way, or limited to only two point processes, i.e. noise and clusters with the same density. In this paper, we present a new density-based cluster method (DECODE), in which a spatial data set is presumed to consist of different point processes and clusters with different densities belong to different point processes. DECODE is based upon a reversible jump Markov Chain Monte Carlo (MCMC) strategy and divided into three steps. The first step is to map each point in the data to its mth nearest distance, which is referred to as the distance between a point and its mth nearest neighbor. In the second step, classification thresholds are determined via a reversible jump MCMC strategy. In the third step, clusters are formed by spatially connecting the points whose mth nearest distances fall into a particular bin defined by the thresholds. Four experiments, including two simulated data sets and two seismic data sets, are used to evaluate the algorithm. Results on simulated data show that our approach is capable of discovering the clusters automatically. Results on seismic data suggest that the clustered earthquakes, identified by DECODE, either imply the epicenters of forthcoming strong earthquakes or indicate the areas with the most intensive seismicity, this is consistent with the tectonic states and estimated stress distribution in the associated areas. The comparison between DECODE and other state-of-the-art methods, such as DBSCAN, OPTICS and Wavelet Cluster, illustrates the contribution of our approach: although DECODE can be computationally expensive, it is capable of identifying the number of point processes and simultaneously estimating the classification thresholds with little prior knowledge.