We examine two fundamental tasks associated with graph representation learning: link prediction and semi-supervised node classification. We present a densely connected autoencoder architecture capable of learning a joint representation of both local graph structure and available external node features for the multi-task learning of link prediction and node classification. To the best of our knowledge, this is the first architecture that can be efficiently trained end-to-end in a single learning stage to simultaneously perform link prediction and node classification. We provide comprehensive empirical evaluation of our models on a range of challenging benchmark graph-structured datasets, and demonstrate significant improvement in accuracy over related methods for graph representation learning. Code implementation is available at this https URL
The field of graph representation learning is seeing a resurgence of research interest in recent years, driven in part by the latest advances in deep learning. The aim is to learn a mapping that encodes the input graph into low-dimensional feature embeddings while preserving its original global structure. @cite_14 succinctly articulate the diverse set of previously proposed approaches for graph representation learning, or graph embedding, as belonging within a unified encoder-decoder framework. In this section, we summarize three classes of encoder-decoder models most related to our work: matrix factorization (MF), autoencoders, and graph convolutional networks (GCNs).
@cite_14
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We propose a novel subgraph image representation for classification of network fragments with the target being their parent networks. The graph image representation is based on 2D image embeddings of adjacency matrices. We use this image representation in two modes. First, as the input to a machine learning algorithm. Second, as the input to a pure transfer learner. Our conclusions from multiple datasets are that 1. deep learning using structured image features performs the best compared to graph kernel and classical features based methods; and, 2. pure transfer learning works effectively with minimum interference from the user and is robust against small data. Celebrated and its fruitful variants are powerful models to achieve excellent performance on the tasks that map sequences to sequences. However, these are many machine learning tasks with inputs naturally represented in a form of graphs, which imposes significant challenges to existing Seq2Seq models for lossless conversion from its graph form to the sequence. In this work, we present a general end-to-end approach to map the input graph to a sequence of vectors, and then another attention-based LSTM to decode the target sequence from these vectors. Specifically, to address inevitable information loss for data conversion, we introduce a novel graph-to-sequence neural network model that follows the encoder-decoder architecture. Our method first uses an improved graph-based neural network to generate the node and graph embeddings by a novel aggregation strategy to incorporate the edge direction information into the node embeddings. We also propose an attention based mechanism that aligns node embeddings and decoding sequence to better cope with large graphs. Experimental results on bAbI task, Shortest Path Task, and Natural Language Generation Task demonstrate that our model achieves the state-of-the-art performance and significantly outperforms other baselines. We also show that with the proposed aggregation strategy, our proposed model is able to quickly converge to good performance. Learning 3D global features by aggregating multiple views has been introduced as a successful strategy for 3D shape analysis. In recent deep learning models with end-to-end training, pooling is a widely adopted procedure for view aggregation. However, pooling merely retains the max or mean value over all views, which disregards the content information of almost all views and also the spatial information among the views. To resolve these issues, we propose Sequential Views To Sequential Labels (SeqViews2SeqLabels) as a novel deep learning model with an encoder–decoder structure based on recurrent neural networks (RNNs) with attention. SeqViews2SeqLabels consists of two connected parts, an encoder-RNN followed by a decoder-RNN, that aim to learn the global features by aggregating sequential views and then performing shape classification from the learned global features, respectively. Specifically, the encoder-RNN learns the global features by simultaneously encoding the spatial and content information of sequential views, which captures the semantics of the view sequence. With the proposed prediction of sequential labels, the decoder-RNN performs more accurate classification using the learned global features by predicting sequential labels step by step. Learning to predict sequential labels provides more and finer discriminative information among shape classes to learn, which alleviates the overfitting problem inherent in training using a limited number of 3D shapes. Moreover, we introduce an attention mechanism to further improve the discriminative ability of SeqViews2SeqLabels. This mechanism increases the weight of views that are distinctive to each shape class, and it dramatically reduces the effect of selecting the first view position. Shape classification and retrieval results under three large-scale benchmarks verify that SeqViews2SeqLabels learns more discriminative global features by more effectively aggregating sequential views than state-of-the-art methods. Graph Convolutional Networks (GCNs) and their variants have experienced significant attention and have become the de facto methods for learning graph representations. GCNs derive inspiration primarily from recent deep learning approaches, and as a result, may inherit unnecessary complexity and redundant computation. In this paper, we reduce this excess complexity through successively removing nonlinearities and collapsing weight matrices between consecutive layers. We theoretically analyze the resulting linear model and show that it corresponds to a fixed low-pass filter followed by a linear classifier. Notably, our experimental evaluation demonstrates that these simplifications do not negatively impact accuracy in many downstream applications. Moreover, the resulting model scales to larger datasets, is naturally interpretable, and yields up to two orders of magnitude speedup over FastGCN.