Phenotyping is the process of measuring an organism's observable traits. Manual phenotyping of crops is a labor-intensive, time-consuming, costly, and error prone process. Accurate, automated, high-throughput phenotyping can relieve a huge burden in the crop breeding pipeline. In this paper, we propose a scalable, high-throughput approach to automatically count and segment panicles (heads), a key phenotype, from aerial sorghum crop imagery. Our counting approach uses the image density map obtained from dot or region annotation as the target with a novel deep convolutional neural network architecture. We also propose a novel instance segmentation algorithm using the estimated density map, to identify the individual panicles in the presence of occlusion. With real Sorghum aerial images, we obtain a mean absolute error (MAE) of 1.06 for counting which is better than using well-known crowd counting approaches such as CCNN, MCNN and CSRNet models. The instance segmentation model also produces respectable results which will be ultimately useful in reducing the manual annotation workload for future data.
A simple but elegant member of this family is the multi-column CNN (MCNN) @cite_0 , as seen in Figure , where the component models in the ensemble are CCNNs with the receptive fields in the convolutional kernel designed for a particular head size. The resulting CCNN predictors are then combined into one density map with a fully convolutional layer. The CCNN tends to over estimate the count when the density is very low and under estimate the count near the horizon line where the density is extremely high. This was used advantageously in the DecideNet model @cite_44 where they noted that the counting by detection approach is particularly good when the density is very low. They then used another neural network to estimate an attention map and combine the two approaches.
@cite_0 @cite_44
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This paper aims to develop a method than can accurately estimate the crowd count from an individual image with arbitrary crowd density and arbitrary perspective. To this end, we have proposed a simple but effective Multi-column Convolutional Neural Network (MCNN) architecture to map the image to its crowd density map. The proposed MCNN allows the input image to be of arbitrary size or resolution. By utilizing filters with receptive fields of different sizes, the features learned by each column CNN are adaptive to variations in people head size due to perspective effect or image resolution. Furthermore, the true density map is computed accurately based on geometry-adaptive kernels which do not need knowing the perspective map of the input image. Since exiting crowd counting datasets do not adequately cover all the challenging situations considered in our work, we have collected and labelled a large new dataset that includes 1198 images with about 330,000 heads annotated. On this challenging new dataset, as well as all existing datasets, we conduct extensive experiments to verify the effectiveness of the proposed model and method. In particular, with the proposed simple MCNN model, our method outperforms all existing methods. In addition, experiments show that our model, once trained on one dataset, can be readily transferred to a new dataset. In this paper we address the problem of counting objects instances in images. Our models are able to precisely estimate the number of vehicles in a traffic congestion, or to count the humans in a very crowded scene. Our first contribution is the proposal of a novel convolutional neural network solution, named Counting CNN (CCNN). Essentially, the CCNN is formulated as a regression model where the network learns how to map the appearance of the image patches to their corresponding object density maps. Our second contribution consists in a scale-aware counting model, the Hydra CNN, able to estimate object densities in different very crowded scenarios where no geometric information of the scene can be provided. Hydra CNN learns a multiscale non-linear regression model which uses a pyramid of image patches extracted at multiple scales to perform the final density prediction. We report an extensive experimental evaluation, using up to three different object counting benchmarks, where we show how our solutions achieve a state-of-the-art performance. For crowded scenes, the accuracy of object-based computer vision methods declines when the images are low-resolution and objects have severe occlusions. Taking counting methods for example, almost all the recent state-of-the-art counting methods bypass explicit detection and adopt regression-based methods to directly count the objects of interest. Among regression-based methods, density map estimation, where the number of objects inside a subregion is the integral of the density map over that subregion, is especially promising because it preserves spatial information, which makes it useful for both counting and localization (detection and tracking). With the power of deep convolutional neural networks (CNNs) the counting performance has improved steadily. The goal of this paper is to evaluate density maps generated by density estimation methods on a variety of crowd analysis tasks, including counting, detection, and tracking. Most existing CNN methods produce density maps with resolution that is smaller than the original images, due to the downsample strides in the convolution pooling operations. To produce an original-resolution density map, we also evaluate a classical CNN that uses a sliding window regressor to predict the density for every pixel in the image. We also consider a fully convolutional (FCNN) adaptation, with skip connections from lower convolutional layers to compensate for loss in spatial information during upsampling. In our experiments, we found that the lower-resolution density maps sometimes have better counting performance. In contrast, the original-resolution density maps improved localization tasks, such as detection and tracking, compared to bilinear upsampling the lower-resolution density maps. Finally, we also propose several metrics for measuring the quality of a density map, and relate them to experiment results on counting and localization. In this work, we tackle the problem of crowd counting in images. We present a Convolutional Neural Network (CNN) based density estimation approach to solve this problem. Predicting a high resolution density map in one go is a challenging task. Hence, we present a two branch CNN architecture for generating high resolution density maps, where the first branch generates a low resolution density map, and the second branch incorporates the low resolution prediction and feature maps from the first branch to generate a high resolution density map. We also propose a multi-stage extension of our approach where each stage in the pipeline utilizes the predictions from all the previous stages. Empirical comparison with the previous state-of-the-art crowd counting methods shows that our method achieves the lowest mean absolute error on three challenging crowd counting benchmarks: Shanghaitech, WorldExpo’10, and UCF datasets.