Volumetric (3d) images are acquired for many scientific and biomedical purposes using imaging methods such as serial section microscopy, CT scans, and MRI. A frequent step in the analysis and reconstruction of such data is the alignment and registration of images that were acquired in succession along a spatial or temporal dimension. For example, in serial section electron microscopy, individual 2d sections are imaged via electron microscopy and then must be aligned to one another in order to produce a coherent 3d volume. State of the art approaches find image correspondences derived from patch matching and invariant feature detectors, and then solve optimization problems that rigidly or elastically deform series of images into an aligned volume. Here we show how fully convolutional neural networks trained with an adversarial loss function can be used for two tasks: (1) synthesis of missing or damaged image data from adjacent sections, and (2) fine-scale alignment of block-face electron microscopy data. Finally, we show how these two capabilities can be combined in order to produce artificial isotropic volumes from anisotropic image volumes using a super-resolution adversarial alignment and interpolation approach.
Registering, stitching, and aligning images that represent contiguous samples along some axis in space or time is a computer vision problem that has found applications across photography, microscopy, astronomy, and many other areas @cite_0 . Classical approaches make heavy use of image-derived correspondences computed by local correlation measurements or robust interest point detectors @cite_10 , which are used to estimate how overlapping or nearly overlapping images geometrically relate to one another. These estimates can then be used to, for example, define an optimization problem in which images are elastically deformed to maximize pixel-wise consistency @cite_1 . Such approaches have proven highly effective for producing coherent 3d volumes from thousands or millions of individual 2d images that may be subject to various types of deformation, artifacts, and missing data.
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The aim of this paper is to achieve seamless image stitching without producing visual artifact caused by severe intensity discrepancy and structure misalignment, given that the input images are roughly aligned or globally registered. Our new approach is based on structure deformation and propagation for achieving the overall consistency in image structure and intensity. The new stitching algorithm, which has found applications in image compositing, image blending, and intensity correction, consists of the following main processes. Depending on the compatibility and distinctiveness of the 2D features detected in the image plane, single or double optimal partitions are computed subject to the constraints of intensity coherence and structure continuity. Afterwards, specific 1D features are detected along the computed optimal partitions from which a set of sparse deformation vectors is derived to encode 1D feature matching between the partitions. These sparse deformation cues are robustly propagated into the input images by solving the associated minimization problem in gradient domain, thus providing a uniform framework for the simultaneous alignment of image structure and intensity. We present results in general image compositing and blending in order to show the effectiveness of our method in producing seamless stitching results from complex input images. Establishing dense correspondences reliably between a pair of images is an important vision task with many applications. Though significant advance has been made towards estimating dense stereo and optical flow fields for two images adjacent in viewpoint or in time, building reliable dense correspondence fields for two general images still remains largely unsolved. For instance, two given images sharing some content exhibit dramatic photometric and geometric variations, or they depict different 3D scenes of similar scene characteristics. Fundamental challenges to such an image or scene alignment task are often multifold, which render many existing techniques fall short of producing dense correspondences robustly and efficiently. This paper presents a novel approach called DAISY filter flow (DFF) to address this challenging task. Inspired by the recent PatchMatch Filter technique, we leverage and extend a few established methods: 1) DAISY descriptors, 2) filter-based efficient flow inference, and 3) the PatchMatch fast search. Coupling and optimizing these modules seamlessly with image segments as the bridge, the proposed DFF approach enables efficiently performing dense descriptor-based correspondence field estimation in a generalized high-dimensional label space, which is augmented by scales and rotations. Experiments on a variety of challenging scenes show that our DFF approach estimates spatially coherent yet discontinuity-preserving image alignment results both robustly and efficiently. This paper concerns the problem of fully automated panoramic image stitching. Though the 1D problem (single axis of rotation) is well studied, 2D or multi-row stitching is more difficult. Previous approaches have used human input or restrictions on the image sequence in order to establish matching images. In this work, we formulate stitching as a multi-image matching problem, and use invariant local features to find matches between all of the images. Because of this our method is insensitive to the ordering, orientation, scale and illumination of the input images. It is also insensitive to noise images that are not part of a panorama, and can recognise multiple panoramas in an unordered image dataset. In addition to providing more detail, this paper extends our previous work in the area (Brown and Lowe, 2003) by introducing gain compensation and automatic straightening steps. We present a novel image stitching approach, which can produce visually plausible panoramic images with input taken from different viewpoints. Unlike previous methods, our approach allows wide baselines between images and non-planar scene structures. Instead of 3D reconstruction, we design a mesh-based framework to optimize alignment and regularity in 2D. By solving a global objective function consisting of alignment and a set of prior constraints, we construct panoramic images, which are locally as perspective as possible and yet nearly orthogonal in the global view. We improve composition and achieve good performance on misaligned areas. Experimental results on challenging data demonstrate the effectiveness of the proposed method.