Over 50 million scholarly articles have been published: they constitute a unique repository of knowledge. In particular, one may infer from them relations between scientific concepts, such as synonyms and hyponyms. Artificial neural networks have been recently explored for relation extraction. In this work, we continue this line of work and present a system based on a convolutional neural network to extract relations. Our model ranked first in the SemEval-2017 task 10 (ScienceIE) for relation extraction in scientific articles (subtask C).
Supervised methods for relation extraction commonly employ support vector machines @cite_10 @cite_36 @cite_1 @cite_21 , na " ve Bayes @cite_38 , maximum entropy @cite_18 , or conditional random fields @cite_28 . These methods require the practitioner to handcraft features, such as surface features, lexical features, syntactic features @cite_30 or features derived from existing ontologies @cite_14 . The use of kernels based on dependency trees has also been explored @cite_12 @cite_11 @cite_8 .
@cite_30 @cite_38 @cite_18 @cite_14 @cite_8 @cite_36 @cite_28 @cite_21 @cite_1 @cite_10 @cite_12 @cite_11
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The wealth of interaction information provided in biomedical articles motivated the implementation of text mining approaches to automatically extract biomedical relations. This paper presents an unsupervised method based on pattern clustering and sentence parsing to deal with biomedical relation extraction. Pattern clustering algorithm is based on Polynomial Kernel method, which identifies interaction words from unlabeled data; these interaction words are then used in relation extraction between entity pairs. Dependency parsing and phrase structure parsing are combined for relation extraction. Based on the semi-supervised KNN algorithm, we extend the proposed unsupervised approach to a semi-supervised approach by combining pattern clustering, dependency parsing and phrase structure parsing rules. We evaluated the approaches on two different tasks: (1) Protein–protein interactions extraction, and (2) Gene–suicide association extraction. The evaluation of task (1) on the benchmark dataset (AImed corpus) showed that our proposed unsupervised approach outperformed three supervised methods. The three supervised methods are rule based, SVM based, and Kernel based separately. The proposed semi-supervised approach is superior to the existing semi-supervised methods. The evaluation on gene–suicide association extraction on a smaller dataset from Genetic Association Database and a larger dataset from publicly available PubMed showed that the proposed unsupervised and semi-supervised methods achieved much higher F-scores than co-occurrence based method. Modern models of relation extraction for tasks like ACE are based on supervised learning of relations from small hand-labeled corpora. We investigate an alternative paradigm that does not require labeled corpora, avoiding the domain dependence of ACE-style algorithms, and allowing the use of corpora of any size. Our experiments use Freebase, a large semantic database of several thousand relations, to provide distant supervision. For each pair of entities that appears in some Freebase relation, we find all sentences containing those entities in a large unlabeled corpus and extract textual features to train a relation classifier. Our algorithm combines the advantages of supervised IE (combining 400,000 noisy pattern features in a probabilistic classifier) and unsupervised IE (extracting large numbers of relations from large corpora of any domain). Our model is able to extract 10,000 instances of 102 relations at a precision of 67.6 . We also analyze feature performance, showing that syntactic parse features are particularly helpful for relations that are ambiguous or lexically distant in their expression. The goal of relation extraction is to detect relations between two entities in free text. In a sentence, a relation instance usually comprises a small number of words, which yields a sparse feature representation. To make better use of limited information in a relation instance, parsing trees and combined features are employed widely to capture the local dependencies of relation instances. However, the performance of parsing tree-based systems is often degraded by chunking or parsing errors. Combined features are used widely, but few studies have addressed how features can be combined to achieve optimal performance. Thus, in this study, we propose a feature assembly method for relation extraction. Six types of candidate features (head noun, POS tag, n-gram, omni-word, etc.) are employed as atomic features and six constraint conditions (singleton, position, syntax, etc.) are used to combine these features in different settings. Depending on the utilization of candidate features, different constraint conditions can be explored to achieve the optimal extraction performance. Our method is effective for capturing local dependencies and it reduces the errors caused by inaccurate parsing. We tested the proposed method using the ACE 2005 Chinese and English corpora, and it achieved state-of-the-art performance, where it was significantly superior to existing methods. Several recent works on relation extraction have been applying the distant supervision paradigm: instead of relying on annotated text to learn how to predict relations, they employ existing knowledge bases (KBs) as source of supervision. Crucially, these approaches are trained based on the assumption that each sentence which mentions the two related entities is an expression of the given relation. Here we argue that this leads to noisy patterns that hurt precision, in particular if the knowledge base is not directly related to the text we are working with. We present a novel approach to distant supervision that can alleviate this problem based on the following two ideas: First, we use a factor graph to explicitly model the decision whether two entities are related, and the decision whether this relation is mentioned in a given sentence; second, we apply constraint-driven semi-supervision to train this model without any knowledge about which sentences express the relations in our training KB. We apply our approach to extract relations from the New York Times corpus and use Freebase as knowledge base. When compared to a state-of-the-art approach for relation extraction under distant supervision, we achieve 31 error reduction. © 2013 Association for Computational Linguistics. Traditional relation extraction predicts relations within some fixed and finite target schema. Machine learning approaches to this task require either manual annotation or, in the case of distant supervision, existing structured sources of the same schema. The need for existing datasets can be avoided by using a universal schema: the union of all involved schemas (surface form predicates as in OpenIE, and relations in the schemas of preexisting databases). This schema has an almost unlimited set of relations (due to surface forms), and supports integration with existing structured data (through the relation types of existing databases). To populate a database of such schema we present matrix factorization models that learn latent feature vectors for entity tuples and relations. We show that such latent models achieve substantially higher accuracy than a traditional classification approach. More importantly, by operating simultaneously on relations observed in text and in pre-existing structured DBs such as Freebase, we are able to reason about unstructured and structured data in mutually-supporting ways. By doing so our approach outperforms stateof- the-Art distant supervision. Distant supervision for relation extraction is an efficient method to scale relation extraction to very large corpora which contains thousands of relations. However, the existing approaches have flaws on selecting valid instances and lack of background knowledge about the entities. In this paper, we propose a sentence-level attention model to select the valid instances, which makes full use of the supervision information from knowledge bases. And we extract entity descriptions from Freebase and Wikipedia pages to supplement background knowledge for our task. The background knowledge not only provides more information for predicting relations, but also brings better entity representations for the attention module. We conduct three experiments on a widely used dataset and the experimental results show that our approach outperforms all the baseline systems significantly. Extracting the relations that exist between two entities is an important step in numerous Web-related tasks such as information extraction. A supervised relation extraction system that is trained to extract a particular relation type might not accurately extract a new type of a relation for which it has not been trained. However, it is costly to create training data manually for every new relation type that one might want to extract. We propose a method to adapt an existing relation extraction system to extract new relation types with minimum supervision. Our proposed method comprises two stages: learning a lower-dimensional projection between different relations, and learning a relational classifier for the target relation type with instance sampling. We evaluate the proposed method using a dataset that contains 2000 instances for 20 different relation types. Our experimental results show that the proposed method achieves a statistically significant macro-average F-score of 62.77. Moreover, the proposed method outperforms numerous baselines and a previously proposed weakly-supervised relation extraction method. The essence of distantly supervised relation extraction is that it is an incomplete multi-label classification problem with sparse and noisy features. To tackle the sparsity and noise challenges, we propose solving the classification problem using matrix completion on factorized matrix of minimized rank. We formulate relation classification as completing the unknown labels of testing items (entity pairs) in a sparse matrix that concatenates training and testing textual features with training labels. Our algorithmic framework is based on the assumption that the rank of item-by-feature and item-by-label joint matrix is low. We apply two optimization models to recover the underlying low-rank matrix leveraging the sparsity of feature-label matrix. The matrix completion problem is then solved by the fixed point continuation (FPC) algorithm, which can find the global optimum. Experiments on two widely used datasets with different dimensions of textual features demonstrate that our low-rank matrix completion approach significantly outperforms the baseline and the state-of-the-art methods. Matrix factorization approaches to relation extraction provide several attractive features: they support distant supervision, handle open schemas, and leverage unlabeled data. Unfortunately, these methods share a shortcoming with all other distantly supervised approaches: they cannot learn to extract target relations without existing data in the knowledge base, and likewise, these models are inaccurate for relations with sparse data. Rule-based extractors, on the other hand, can be easily extended to novel relations and improved for existing but inaccurate relations, through first-order formulae that capture auxiliary domain knowledge. However, usually a large set of such formulae is necessary to achieve generalization. In this paper, we introduce a paradigm for learning low-dimensional embeddings of entity-pairs and relations that combine the advantages of matrix factorization with first-order logic domain knowledge. We introduce simple approaches for estimating such embeddings, as well as a novel training algorithm to jointly optimize over factual and first-order logic information. Our results show that this method is able to learn accurate extractors with little or no distant supervision alignments, while at the same time generalizing to textual patterns that do not appear in the formulae. Two problems arise when using distant supervision for relation extraction. First, in this method, an already existing knowledge base is heuristically aligned to texts, and the alignment results are treated as labeled data. However, the heuristic alignment can fail, resulting in wrong label problem. In addition, in previous approaches, statistical models have typically been applied to ad hoc features. The noise that originates from the feature extraction process can cause poor performance. In this paper, we propose a novel model dubbed the Piecewise Convolutional Neural Networks (PCNNs) with multi-instance learning to address these two problems. To solve the first problem, distant supervised relation extraction is treated as a multi-instance problem in which the uncertainty of instance labels is taken into account. To address the latter problem, we avoid feature engineering and instead adopt convolutional architecture with piecewise max pooling to automatically learn relevant features. Experiments show that our method is effective and outperforms several competitive baseline methods. Broad-coverage relation extraction either requires expensive supervised training data, or suffers from drawbacks inherent to distant supervision. We present an approach for providing partial supervision to a distantly supervised relation extractor using a small number of carefully selected examples. We compare against established active learning criteria and propose a novel criterion to sample examples which are both uncertain and representative. In this way, we combine the benefits of fine-grained supervision for difficult examples with the coverage of a large distantly supervised corpus. Our approach gives a substantial increase of 3.9 endto-end F1 on the 2013 KBP Slot Filling evaluation, yielding a net F1 of 37.7 . We present a novel approach to relation extraction that integrates information across documents, performs global inference and requires no labelled text. In particular, we tackle relation extraction and entity identification jointly. We use distant supervision to train a factor graph model for relation extraction based on an existing knowledge base (Freebase, derived in parts from Wikipedia). For inference we run an efficient Gibbs sampler that leads to linear time joint inference. We evaluate our approach both for an indomain (Wikipedia) and a more realistic out-of-domain (New York Times Corpus) setting. For the in-domain setting, our joint model leads to 4 higher precision than an isolated local approach, but has no advantage over a pipeline. For the out-of-domain data, we benefit strongly from joint modelling, and observe improvements in precision of 13 over the pipeline, and 15 over the isolated baseline.