We identify a fundamental issue in the popular Stochastic Neighbour Embedding (SNE and t-SNE), i.e., the "learned" similarity of any two points in high-dimensional space is not defined and cannot be computed. It underlines two previously unexplored issues in the algorithm which have undermined the quality of its final visualisation output and its ability to process large datasets. The issues are:(a) the reference probability in high-dimensional space is set based on entropy which has undefined relation with local density; and (b) the use of data independent kernel which leads to the need to determine n bandwidths for a dataset of n points. This paper establishes a principle to set the reference probability via a data-dependent kernel which has a well-defined kernel characteristic that linked directly to local density. A solution based on a recent data-dependent kernel called Isolation Kernel addresses the fundamental issue as well as its two ensuing issues. As a result, it significantly improves the quality of the final visualisation output and removes one obstacle that prevents t-SNE from processing large datasets. The solution is extremely simple, i.e., simply replacing the existing data independent kernel with Isolation Kernel, leaving the rest of the t-SNE procedure unchanged.
There are some improvements based on revised Gaussian Kernel functions in order to get better similarity measurements. @cite_8 proposes a symmetrised SNE, @cite_3 enable t-SNE to accommodate various heavy-tailed embedding similarity functions; and @cite_1 propose an algorithm based on similarity triplets of the form A is more similar to B than to C'' to model the local structure of the data more effectively.
@cite_1 @cite_3 @cite_8
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Stochastic Neighbor Embedding (SNE) has shown to be quite promising for data visualization. Currently, the most popular implementation, t-SNE, is restricted to a particular Student t-distribution as its embedding distribution. Moreover, it uses a gradient descent algorithm that may require users to tune parameters such as the learning step size, momentum, etc., in finding its optimum. In this paper, we propose the Heavy-tailed Symmetric Stochastic Neighbor Embedding (HSSNE) method, which is a generalization of the t-SNE to accommodate various heavy-tailed embedding similarity functions. With this generalization, we are presented with two difficulties. The first is how to select the best embedding similarity among all heavy-tailed functions and the second is how to optimize the objective function once the heavy-tailed function has been selected. Our contributions then are: (1) we point out that various heavy-tailed embedding similarities can be characterized by their negative score functions. Based on this finding, we present a parameterized subset of similarity functions for choosing the best tail-heaviness for HSSNE; (2) we present a fixed-point optimization algorithm that can be applied to all heavy-tailed functions and does not require the user to set any parameters; and (3) we present two empirical studies, one for unsupervised visualization showing that our optimization algorithm runs as fast and as good as the best known t-SNE implementation and the other for semi-supervised visualization showing quantitative superiority using the homogeneity measure as well as qualitative advantage in cluster separation over t-SNE. This paper considers the problem of learning an embedding of data based on similarity triplets of the form “A is more similar to B than to C”. This learning setting is of relevance to scenarios in which we wish to model human judgements on the similarity of objects. We argue that in order to obtain a truthful embedding of the underlying data, it is insufficient for the embedding to satisfy the constraints encoded by the similarity triplets. In particular, we introduce a new technique called t-Distributed Stochastic Triplet Embedding (t-STE) that collapses similar points and repels dissimilar points in the embedding — even when all triplet constraints are satisfied. Our experimental evaluation on three data sets shows that as a result, t-STE is much better than existing techniques at revealing the underlying data structure. A first line of attack in exploratory data analysis is data visualization, i.e., generating a 2-dimensional representation of data that makes clusters of similar points visually identifiable. Standard Johnson-Lindenstrauss dimensionality reduction does not produce data visualizations. The t-SNE heuristic of van der Maaten and Hinton, which is based on non-convex optimization, has become the de facto standard for visualization in a wide range of applications. This work gives a formal framework for the problem of data visualization - finding a 2-dimensional embedding of clusterable data that correctly separates individual clusters to make them visually identifiable. We then give a rigorous analysis of the performance of t-SNE under a natural, deterministic condition on the "ground-truth" clusters (similar to conditions assumed in earlier analyses of clustering) in the underlying data. These are the first provable guarantees on t-SNE for constructing good data visualizations. We show that our deterministic condition is satisfied by considerably general probabilistic generative models for clusterable data such as mixtures of well-separated log-concave distributions. Finally, we give theoretical evidence that t-SNE provably succeeds in partially recovering cluster structure even when the above deterministic condition is not met. Techniques for multidimensional scaling visualize objects as points in a low-dimensional metric map. As a result, the visualizations are subject to the fundamental limitations of metric spaces. These limitations prevent multidimensional scaling from faithfully representing non-metric similarity data such as word associations or event co-occurrences. In particular, multidimensional scaling cannot faithfully represent intransitive pairwise similarities in a visualization, and it cannot faithfully visualize "central" objects. In this paper, we present an extension of a recently proposed multidimensional scaling technique called t-SNE. The extension aims to address the problems of traditional multidimensional scaling techniques when these techniques are used to visualize non-metric similarities. The new technique, called multiple maps t-SNE, alleviates these problems by constructing a collection of maps that reveal complementary structure in the similarity data. We apply multiple maps t-SNE to a large data set of word association data and to a data set of NIPS co-authorships, demonstrating its ability to successfully visualize non-metric similarities. Neighborhood Components Analysis (NCA) is a popular method for learning a distance metric to be used within a k-nearest neighbors (kNN) classifier. A key assumption built into the model is that each point stochastically selects a single neighbor, which makes the model well-justified only for kNN with k = 1. However, kNN classifiers with k > 1 are more robust and usually preferred in practice. Here we present kNCA, which generalizes NCA by learning distance metrics that are appropriate for kNN with arbitrary k. The main technical contribution is showing how to efficiently compute and optimize the expected accuracy of a kNN classifier. We apply similar ideas in an unsupervised setting to yield kSNE and kt-SNE, generalizations of Stochastic Neighbor Embedding (SNE, t-SNE) that operate on neighborhoods of size k, which provide an axis of control over embeddings that allow for more homogeneous and interpretable regions. Empirically, we show that kNCA often improves classification accuracy over state of the art methods, produces qualitative differences in the embeddings as k is varied, and is more robust with respect to label noise. In recent years scholars have built maps of science by connecting the academic fields that cite each other, are cited together, or that cite a similar literature. But since scholars cannot always publish in the fields they cite, or that cite them, these science maps are only rough proxies for the potential of a scholar, organization, or country, to enter a new academic field. Here we use a large dataset of scholarly publications disambiguated at the individual level to create a map of science-or research space-where links connect pairs of fields based on the probability that an individual has published in both of them. We find that the research space is a significantly more accurate predictor of the fields that individuals and organizations will enter in the future than citation based science maps. At the country level, however, the research space and citations based science maps are equally accurate. These findings show that data on career trajectories-the set of fields that individuals have previously published in-provide more accurate predictors of future research output for more focalized units-such as individuals or organizations-than citation based science maps. The old Asian legend about the blind men and the elephant comes to mind when looking at how different authors of scientific papers describe a piece of related prior work. It turns out that different citations to the same paper often focus on different aspects of that paper and that neither provides a full description of its full set of contributions. In this article, we will describe our investigation of this phenomenon. We studied citation summaries in the context of research papers in the biomedical domain. A citation summary is the set of citing sentences for a given article and can be used as a surrogate for the actual article in a variety of scenarios. It contains information that was deemed by peers to be important. Our study shows that citation summaries overlap to some extent with the abstracts of the papers and that they also differ from them in that they focus on different aspects of these papers than do the abstracts. In addition to this, co-cited articles (which are pairs of articles cited by another article) tend to be similar. We show results based on a lexical similarity metric called cohesion to justify our claims. © 2008 Wiley Periodicals, Inc. Chen's data for the raw frequency of use of 138 physics journals in the science library at M I T are re‐examined and converted to densities of use‐per‐metre of shelf. Other units of size for obtaining densities, and their measurement, are discussed. There is no evidence for synchronous obsolescence in the 1955 to 1968 volumes of these journals: instead there is some statistically significant evidence of greater density of use with greater age. Similar evidence elsewhere is cited. The ranking order for heaviness of use is also radically altered by converting raw frequencies to densities of use. It is suggested that, for comparing the relative values of different journals, or age groups, in library use or citation studies, analyses of raw frequencies are valueless, and indeed potentially dangerously misleading, until they are converted to allow for the numbers of available items in each group examined. Fast retrieval methods are critical for large-scale and data-driven vision applications. Recent work has explored ways to embed high-dimensional features or complex distance functions into a low-dimensional Hamming space where items can be efficiently searched. However, existing methods do not apply for high-dimensional kernelized data when the underlying feature embedding for the kernel is unknown. We show how to generalize locality-sensitive hashing to accommodate arbitrary kernel functions, making it possible to preserve the algorithm's sub-linear time similarity search guarantees for a wide class of useful similarity functions. Since a number of successful image-based kernels have unknown or incomputable embeddings, this is especially valuable for image retrieval tasks. We validate our technique on several large-scale datasets, and show that it enables accurate and fast performance for example-based object classification, feature matching, and content-based retrieval. Learning hash functions codes for similarity search over multi-view data is attracting increasing attention, where similar hash codes are assigned to the data objects characterizing consistently neighborhood relationship across views. Traditional methods in this category inherently suffer three limitations: 1) they commonly adopt a two-stage scheme where similarity matrix is first constructed, followed by a subsequent hash function learning; 2) these methods are commonly developed on the assumption that data samples with multiple representations are noise-free,which is not practical in real-life applications; and 3) they often incur cumbersome training model caused by the neighborhood graph construction using all N points in the database (O(N)). In this paper, we motivate the problem of jointly and efficiently training the robust hash functions over data objects with multi-feature representations which may be noise corrupted. To achieve both the robustness and training efficiency, we propose an approach to effectively and efficiently learning low-rank kernelized11We use kernelized similarity rather than kernel, as it is not a squared symmetric matrix for data-landmark affinity matrix. hash functions shared across views. Specifically, we utilize landmark graphs to construct tractable similarity matrices in multi-views to automatically discover neighborhood structure in the data. To learn robust hash functions, a latent low-rank kernel function is used to construct hash functions in order to accommodate linearly inseparable data. In particular, a latent kernelized similarity matrix is recovered by rank minimization on multiple kernel-based similarity matrices. Extensive experiments on real-world multi-view datasets validate the efficacy of our method in the presence of error corruptions.We use kernelized similarity rather than kernel, as it is not a squared symmetric matrix for data-landmark affinity matrix. A robust hashing method for multi-view data with noise corruptions is presented.It is to jointly learn a low-rank kernelized similarity consensus and hash functions.Approximate landmark graph is employed to make training fast.Extensive experiments are conducted on benchmarks to show the efficacy of our model. In this work, we address the problem of joint modeling of text and citations in the topic modeling framework. We present two different models called the Pairwise-Link-LDA and the Link-PLSA-LDA models. The Pairwise-Link-LDA model combines the ideas of LDA [4] and Mixed Membership Block Stochastic Models [1] and allows modeling arbitrary link structure. However, the model is computationally expensive, since it involves modeling the presence or absence of a citation (link) between every pair of documents. The second model solves this problem by assuming that the link structure is a bipartite graph. As the name indicates, Link-PLSA-LDA model combines the LDA and PLSA models into a single graphical model. Our experiments on a subset of Citeseer data show that both these models are able to predict unseen data better than the baseline model of Erosheva and Lafferty [8], by capturing the notion of topical similarity between the contents of the cited and citing documents. Our experiments on two different data sets on the link prediction task show that the Link-PLSA-LDA model performs the best on the citation prediction task, while also remaining highly scalable. In addition, we also present some interesting visualizations generated by each of the models. In this paper, we address the problem of human pose estimation through a novel articulated Gaussian kernel correlation function which is applied to human pose tracking from a single depth sensor. We first derive a unified Gaussian kernel correlation that can generalize the previous Sum-of-Gaussians (SoG)-based methods for the similarity measure between a template and the observation. Furthermore, we develop an articulated Gaussian kernel correlation by embedding a tree-structured skeleton model, which enables us to estimate the full-body pose parameters. Also, the new kernel correlation framework can easily penalize undesired body intersection which is more natural than the clamping function in previous methods. Our algorithm is general, simple yet effective and can achieve real-time performance. The experimental results on a public depth dataset are promising and competitive when compared with state-of-the-art algorithms. Abstract We study the behavior at infinity of the tail of the stationary solution of a multidimensional linear auto-regressive process with random coefficients. We exhibit an extended class of multiplicative coefficients satisfying a condition of irreducibility and proximality that yield to a heavy tail behavior. To cite this article: B. de , C. R. Acad. Sci. Paris, Ser. I 339 (2004). Preface 1. Introduction 2. Some context for Context Analysis: a view of the origins of structural studies of face-to-face interaction 3. Some functions of gaze direction in two-person conversation 4. Movement co-ordination in social interaction 5. Some functions of the face in a kissing round 6. A description of some human greetings 7. Spatial organisation in social encounters: the F-formation system 8. Behavioural foundations for the process of frame-attunement in face-to-face interaction List of films cited References Index. The modern image search system requires semantic understanding of image, and a key yet under-addressed problem is to learn a good metric for measuring the similarity between images. While deep metric learning has yielded impressive performance gains by extracting high level abstractions from image data, a proper objective loss function becomes the central issue to boost the performance. In this paper, we propose a novel angular loss, which takes angle relationship into account, for learning better similarity metric. Whereas previous metric learning methods focus on optimizing the similarity (contrastive loss) or relative similarity (triplet loss) of image pairs, our proposed method aims at constraining the angle at the negative point of triplet triangles. Several favorable properties are observed when compared with conventional methods. First, scale invariance is introduced, improving the robustness of objective against feature variance. Second, a third-order geometric constraint is inherently imposed, capturing additional local structure of triplet triangles than contrastive loss or triplet loss. Third, better convergence has been demonstrated by experiments on three publicly available datasets. Abstract Documents in computer-readable form can be used to provide information about other documents, i.e. those they cite. To do this efficiently requires procedures for computer recognition of citing statements. This is not easy, especially for multi-sentence citing statements. Computer recognition procedures have been developed which are accurate to the following extent: 73 of the words in statements selected by computer procedures as being citing statements are words which are correctly attributable to the corresponding documents. The retrieval effectiveness of computer-recognized citing statements was tested in the following way. First, for eight retrieval requests in inorganiic chemistry, average recall by search of Chemical Abstracts Service indexing and Chemical Abstracts abstract text words was found to be 50 . Words from citing statements referring to the papers to be retrieved were then added to the index terms and abstract words as additional access points, and searching was repeated. Average recall increased to 70 . Only words from citing statements published within a year of the cited papers were used. The retrieval effect of citing statement words alone (published within a year) without index or abstract terms was the following: average recall was 40 . When just the words of the titles of the cited papers were added to those citing statement words, average recall increased to 50 . A citing sentence is one that appears in a scientific article and cites previous work. Citing sentences have been studied and used in many applications. For example, they have been used in scientific paper summarization, automatic survey generation, paraphrase identification, and citation function classification. Citing sentences that cite multiple papers are common in scientific writing. This observation should be taken into consideration when using citing sentences in applications. For instance, when a citing sentence is used in a summary of a scientific paper, only the fragments of the sentence that are relevant to the summarized paper should be included in the summary. In this paper, we present and compare three different approaches for identifying the fragments of a citing sentence that are related to a given target reference. Our methods are: word classification, sequence labeling, and segment classification. Our experiments show that segment classification achieves the best results. We introduce an algorithm that, given n objects, learns a similarity matrix over all n2 pairs, from crowdsourced data alone. The algorithm samples responses to adaptively chosen triplet-based relative-similarity queries. Each query has the form "is object a more similar to b or to c?" and is chosen to be maximally informative given the preceding responses. The output is an embedding of the objects into Euclidean space (like MDS); we refer to this as the "crowd kernel." SVMs reveal that the crowd kernel captures prominent and subtle features across a number of domains, such as "is striped" among neckties and "vowel vs. consonant" among letters. We introduce an algorithm that, given n objects, learns a similarity matrix over all n^2 pairs, from crowdsourced data alone. The algorithm samples responses to adaptively chosen triplet-based relative-similarity queries. Each query has the form "is object 'a' more similar to 'b' or to 'c'?" and is chosen to be maximally informative given the preceding responses. The output is an embedding of the objects into Euclidean space (like MDS); we refer to this as the "crowd kernel." SVMs reveal that the crowd kernel captures prominent and subtle features across a number of domains, such as "is striped" among neckties and "vowel vs. consonant" among letters. Visualizing high-dimensional data has been a focus in data analysis communities for decades, which has led to the design of many algorithms, some of which are now considered references (such as t-SNE for example). In our era of overwhelming data volumes, the scalability of such methods have become more and more important. In this work, we present a method which allows to apply any visualization or embedding algorithm on very large datasets by considering only a fraction of the data as input and then extending the information to all data points using a graph encoding its global similarity. We show that in most cases, using only O(log(N)) samples is sufficient to diffuse the information to all N data points. In addition, we propose quantitative methods to measure the quality of embeddings and demonstrate the validity of our technique on both synthetic and real-world datasets.