We introduce a framework for the modeling of sequential data capturing pathways of varying lengths observed in a network. Such data are important, e.g., when studying click streams in the Web, travel patterns in transportation systems, information cascades in social networks, biological pathways, or time-stamped social interactions. While it is common to apply graph analytics and network analysis to such data, recent works have shown that temporal correlations can invalidate the results of such methods. This raises a fundamental question: When is a network abstraction of sequential data justified?Addressing this open question, we propose a framework that combines Markov chains of multiple, higher orders into a multi-layer graphical model that captures temporal correlations in pathways at multiple length scales simultaneously. We develop a model selection technique to infer the optimal number of layers of such a model and show that it outperforms baseline Markov order detection techniques. An application to eight real-world data sets on pathways and temporal networks shows that it allows to infer graphical models that capture both topological and temporal characteristics of such data. Our work highlights fallacies of network abstractions and provides a principled answer to the open question when they are justified. Generalizing network representations to multi-order graphical models, it opens perspectives for new data mining and knowledge discovery algorithms.
The analysis of sequential data has important applications in areas like natural language processing, data compression, behavioral modeling or bioinformatics @cite_25 @cite_23 @cite_6 . Considering the focus of this paper, here we limit our review of the relevant literature to works addressing the modeling of (i) sequential data on pathways in graphs, or (ii) time-stamped data on temporal or dynamic graphs.
@cite_25 @cite_23 @cite_6
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A citing sentence is one that appears in a scientific article and cites previous work. Citing sentences have been studied and used in many applications. For example, they have been used in scientific paper summarization, automatic survey generation, paraphrase identification, and citation function classification. Citing sentences that cite multiple papers are common in scientific writing. This observation should be taken into consideration when using citing sentences in applications. For instance, when a citing sentence is used in a summary of a scientific paper, only the fragments of the sentence that are relevant to the summarized paper should be included in the summary. In this paper, we present and compare three different approaches for identifying the fragments of a citing sentence that are related to a given target reference. Our methods are: word classification, sequence labeling, and segment classification. Our experiments show that segment classification achieves the best results. With the tremendous amount of research publications, recommending relevant papers to researchers to fulfill their information need becomes a significant problem. The major challenge to be tackled by our work is that given a target paper, how to effectively recommend a set of relevant papers from an existing citation network. In this paper, we propose a novel method to address the problem by incorporating various citation relations for a proper set of papers, which are more relevant but with a very limited size. The proposed method has two unique properties. Firstly, a metric called Local Relation Strength is defined to measure the dependency between cited and citing papers. Secondly, a model called Global Relation Strength is proposed to capture the relevance between two papers in the whole citation graph. We evaluate our proposed model on a real-world publication dataset and conduct an extensive comparison with the state-of-the-art baseline methods. The experimental results demonstrate that our method can have a promising improvement over the state-of-the-art techniques. The article introduces digital image restoration to the reader who is just beginning in this field, and provides a review and analysis for the reader who may already be well-versed in image restoration. The perspective on the topic is one that comes primarily from work done in the field of signal processing. Thus, many of the techniques and works cited relate to classical signal processing approaches to estimation theory, filtering, and numerical analysis. In particular, the emphasis is placed primarily on digital image restoration algorithms that grow out of an area known as "regularized least squares" methods. It should be noted, however, that digital image restoration is a very broad field, as we discuss, and thus contains many other successful approaches that have been developed from different perspectives, such as optics, astronomy, and medical imaging, just to name a few. In the process of reviewing this topic, we address a number of very important issues in this field that are not typically discussed in the technical literature. Scholars are increasingly citing electronic “web references” which are not preserved in libraries or full text archives. WebCite is a new standard for citing web references. To “webcite” a document involves archiving the cited Web page through www.webcitation.org and citing the WebCite permalink instead of (or in addition to) the unstable live Web page. This journal has amended its “instructions for authors” accordingly, asking authors to archive cited Web pages before submitting a manuscript. Almost 200 other journals are already using the system. We discuss the rationale for WebCite, its technology, and how scholars, editors, and publishers can benefit from the service. Citing scholars initiate an archiving process of all cited Web references, ideally before they submit a manuscript. Authors of online documents and websites which are expected to be cited by others can ensure that their work is permanently available by creating an archived copy using WebCite and providing the citation information including the WebCite link on their Web document(s). Editors should ask their authors to cache all cited Web addresses (Uniform Resource Locators, or URLs) “prospectively” before submitting their manuscripts to their journal. Editors and publishers should also instruct their copyeditors to cache cited Web material if the author has not done so already. Finally, WebCite can process publisher submitted “citing articles” (submitted for example as eXtensible Markup Language [XML] documents) to automatically archive all cited Web pages shortly before or on publication. Finally, WebCite can act as a focussed crawler, caching retrospectively references of already published articles. Copyright issues are addressed by honouring respective Internet standards (robot exclusion files, no-cache and no-archive tags). Long-term preservation is ensured by agreements with libraries and digital preservation organizations. The resulting WebCite Index may also have applications for research assessment exercises, being able to measure the impact of Web services and published Web documents through access and Web citation metrics. @PARASPLIT [J Med Internet Res 2005;7(5):e60] Allan Bloom's cytologic epistemology invites further analysis. A scientific article is like a cell that interacts with its neighbors to form an organ-like cluster—a set of articles or a "literature" addressed to a common set of problems and topics. These articles interact by citing one another—by conversing in print. The clusters themselves can be seen as interacting, to varying degrees, with other clusters. This essay will focus on certain failures of intercluster communication. In recent years scholars have built maps of science by connecting the academic fields that cite each other, are cited together, or that cite a similar literature. But since scholars cannot always publish in the fields they cite, or that cite them, these science maps are only rough proxies for the potential of a scholar, organization, or country, to enter a new academic field. Here we use a large dataset of scholarly publications disambiguated at the individual level to create a map of science-or research space-where links connect pairs of fields based on the probability that an individual has published in both of them. We find that the research space is a significantly more accurate predictor of the fields that individuals and organizations will enter in the future than citation based science maps. At the country level, however, the research space and citations based science maps are equally accurate. These findings show that data on career trajectories-the set of fields that individuals have previously published in-provide more accurate predictors of future research output for more focalized units-such as individuals or organizations-than citation based science maps. Patent prior art search is a type of search in the patent domain where documents are searched for that describe the work previously carried out related to a patent application. The goal of this search is to check whether the idea in the patent application is novel. Vocabulary mismatch is one of the main problems of patent retrieval which results in low retrievability of similar documents for a given patent application. In this paper we show how the term distribution of the cited documents in an initially retrieved ranked list can be used to address the vocabulary mismatch. We propose a method for query modeling estimation which utilizes the citation links in a pseudo relevance feedback set. We first build a topic dependent citation graph, starting from the initially retrieved set of feedback documents and utilizing citation links of feedback documents to expand the set. We identify the important documents in the topic dependent citation graph using a citation analysis measure. We then use the term distribution of the documents in the citation graph to estimate a query model by identifying the distinguishing terms and their respective weights. We then use these terms to expand our original query. We use CLEF-IP 2011 collection to evaluate the effectiveness of our query modeling approach for prior art search. We also study the influence of different parameters on the performance of the proposed method. The experimental results demonstrate that the proposed approach significantly improves the recall over a state-of-the-art baseline which uses the link-based structure of the citation graph but not the term distribution of the cited documents. This paper examines a number of the criticisms that citation analysis has been subjected to over the years. It is argued that many of these criticisms have been based on only limited examinations of data in particular contexts and it remains unclear how broadly applicable these problems are to research conducted at different levels of analysis, in specific field, and among various national data sets. Relevant evidence is provided from analysis of Australian and international data. Citation analysis is likely to be most reliable when data is aggregated and at the highly-cited end of the distribution. It is possible to make valid inferences about individual cases, although considerable caution should be used. Bibliometric measures should be viewed as a useful supplement to other research evaluation measures rather than as a replacement. Purpose – The purpose of this paper is to suggest an alternative to the widely used Times Cited criterion for analysing citation networks. The approach involves taking account of the natures of the papers that cite a given paper, so as to differentiate between papers that attract the same number of citations.Design methodology approach – ArticleRank is an algorithm that has been derived from Google's PageRank algorithm to measure the influence of journal articles. ArticleRank is applied to two datasets – a citation network based on an early paper on webometrics, and a self‐citation network based on the 19 most cited papers in the Journal of Documentation – using citation data taken from the Web of Knowledge database.Findings – ArticleRank values provide a different ranking of a set of papers from that provided by the corresponding Times Cited values, and overcomes the inability of the latter to differentiate between papers with the same numbers of citations. The difference in rankings between Times Cited ... In a document network such as a citation network of scientific documents, web-logs, etc., the content produced by authors exhibits their interest in certain topics. In addition some authors influence other authors' interests. In this work, we propose to model the influence of cited authors along with the interests of citing authors. Moreover, we hypothesize that apart from the citations present in documents, the context surrounding the citation mention provides extra topical information about the cited authors. However, associating terms in the context to the cited authors remains an open problem. We propose novel document generation schemes that incorporate the context while simultaneously modeling the interests of citing authors and influence of the cited authors. Our experiments show significant improvements over baseline models for various evaluation criteria such as link prediction between document and cited author, and quantitatively explaining unseen text. We present a study of anonymized data capturing a month of high-level communication activities within the whole of the Microsoft Messenger instant-messaging system. We examine characteristics and patterns that emerge from the collective dynamics of large numbers of people, rather than the actions and characteristics of individuals. The dataset contains summary properties of 30 billion conversations among 240 million people. From the data, we construct a communication graph with 180 million nodes and 1.3 billion undirected edges, creating the largest social network constructed and analyzed to date. We report on multiple aspects of the dataset and synthesized graph. We find that the graph is well-connected and robust to node removal. We investigate on a planetary-scale the oft-cited report that people are separated by "six degrees of separation" and find that the average path length among Messenger users is 6.6. We find that people tend to communicate more with each other when they have similar age, language, and location, and that cross-gender conversations are both more frequent and of longer duration than conversations with the same gender. Citation relationship between scientific publications has been successfully used for scholarly bibliometrics, information retrieval and data mining tasks, and citation-based recommendation algorithms are well documented. While previous studies investigated citation relations from various viewpoints, most of them share the same assumption that, if paper1 cites paper2 (or author1 cites author2), they are connected, regardless of citation importance, sentiment, reason, topic, or motivation. However, this assumption is oversimplified. In this study, we employ an innovative "context-rich heterogeneous network" approach, which paves a new way for citation recommendation task. In the network, we characterize 1) the importance of citation relationships between citing and cited papers, and 2) the topical citation motivation. Unlike earlier studies, the citation information, in this paper, is characterized by citation textual contexts extracted from the full-text citing paper. We also propose algorithm to cope with the situation when large portion of full-text missing information exists in the bibliographic repository. Evaluation results show that, context-rich heterogeneous network can significantly enhance the citation recommendation performance. In this work, we address the problem of joint modeling of text and citations in the topic modeling framework. We present two different models called the Pairwise-Link-LDA and the Link-PLSA-LDA models. The Pairwise-Link-LDA model combines the ideas of LDA [4] and Mixed Membership Block Stochastic Models [1] and allows modeling arbitrary link structure. However, the model is computationally expensive, since it involves modeling the presence or absence of a citation (link) between every pair of documents. The second model solves this problem by assuming that the link structure is a bipartite graph. As the name indicates, Link-PLSA-LDA model combines the LDA and PLSA models into a single graphical model. Our experiments on a subset of Citeseer data show that both these models are able to predict unseen data better than the baseline model of Erosheva and Lafferty [8], by capturing the notion of topical similarity between the contents of the cited and citing documents. Our experiments on two different data sets on the link prediction task show that the Link-PLSA-LDA model performs the best on the citation prediction task, while also remaining highly scalable. In addition, we also present some interesting visualizations generated by each of the models. A major problem in social network analysis and link discovery is the discovery of hidden organizational structure and selection of interesting influential members based on low-level, incomplete and noisy evidence data. To address such a challenge, we exploit an information theoretic model that combines information theory with statistical techniques from area of text mining and natural language processing. The Entropy model identifies the most interesting and important nodes in a graph. We show how entropy models on graphs are relevant to study of information flow in an organization. We review the results of two different experiments which are based on entropy models. The first version of this model has been successfully tested and evaluated on the Enron email dataset. The old Asian legend about the blind men and the elephant comes to mind when looking at how different authors of scientific papers describe a piece of related prior work. It turns out that different citations to the same paper often focus on different aspects of that paper and that neither provides a full description of its full set of contributions. In this article, we will describe our investigation of this phenomenon. We studied citation summaries in the context of research papers in the biomedical domain. A citation summary is the set of citing sentences for a given article and can be used as a surrogate for the actual article in a variety of scenarios. It contains information that was deemed by peers to be important. Our study shows that citation summaries overlap to some extent with the abstracts of the papers and that they also differ from them in that they focus on different aspects of these papers than do the abstracts. In addition to this, co-cited articles (which are pairs of articles cited by another article) tend to be similar. We show results based on a lexical similarity metric called cohesion to justify our claims. © 2008 Wiley Periodicals, Inc. How can we describe a large, dynamic graph over time? Is it random? If not, what are the most apparent deviations from randomness -- a dense block of actors that persists over time, or perhaps a star with many satellite nodes that appears with some fixed periodicity? In practice, these deviations indicate patterns -- for example, botnet attackers forming a bipartite core with their victims over the duration of an attack, family members bonding in a clique-like fashion over a difficult period of time, or research collaborations forming and fading away over the years. Which patterns exist in real-world dynamic graphs, and how can we find and rank them in terms of importance? These are exactly the problems we focus on in this work. Our main contributions are (a) formulation: we show how to formalize this problem as minimizing the encoding cost in a data compression paradigm, (b) algorithm: we propose TIMECRUNCH, an effective, scalable and parameter-free method for finding coherent, temporal patterns in dynamic graphs and (c) practicality: we apply our method to several large, diverse real-world datasets with up to 36 million edges and 6.3 million nodes. We show that TIMECRUNCH is able to compress these graphs by summarizing important temporal structures and finds patterns that agree with intuition. A new form of document coupling called co-citation is defined as the frequency with which two documents are cited together. The co-citation frequency of two scientific papers can be determined by comparing lists of citing documents in the Science Citation Index and counting identical entries. Networks of co-cited papers can be generated for specific scientific specialties, and an example is drawn from the literature of particle physics. Co-citation patterns are found to differ significantly from bibliographic coupling patterns, but to agree generally with patterns of direct citation. Clusters of co-cited papers provide a new way to study the specialty structure of science. They may provide a new approach to indexing and to the creation of SDI profiles. Prediction markets are economic mechanisms for aggregating information about future events through sequential interactions with traders. The pricing mechanisms in these markets are known to be related to optimization algorithms in machine learning and through these connections we have some understanding of how equilibrium market prices relate to the beliefs of the traders in a market. However, little is known about rates and guarantees for the convergence of these sequential mechanisms, and two recent papers cite this as an important open question. In this paper we show how some previously studied prediction market trading models can be understood as a natural generalization of randomized coordinate descent which we call randomized subspace descent (RSD). We establish convergence rates for RSD and leverage them to prove rates for the two prediction market models above, answering the open questions. Our results extend beyond standard centralized markets to arbitrary trade networks. How do blogs cite and influence each other? How do such links evolve? Does the popularity of old blog posts drop exponentially with time? These are some of the questions that we address in this work. Blogs (weblogs) have become an important medium of information because of their timely publication, ease of use, and wide availability. In fact, they often make headlines, by discussing and discovering evidence about political events and facts. Often blogs link to one another, creating a publicly available record of how information and influence spreads through an underlying social network. Aggregating links from several blog posts creates a directed graph which we analyze to discover the patterns of information propagation in blogspace, and thereby understand the underlying social network. Here we report some surprising findings of the blog linking and information propagation structure, after we analyzed one of the largest available datasets, with 45, 000 blogs and ≈ 2.2 million blog-postings. Our analysis also sheds light on how rumors, viruses, and ideas propagate over social and computer networks. The Sleator-Tarjan competitive analysis of paging (Comm. ACM28 (1985), 202-208) gives us the ability to make strong theoretical statements about the performance of paging algorithms without making probabilistic assumptions on the input. Nevertheless practitioners voice reservations about the model, citing its inability to discern between LRU and FIFO (algorithms whose performances differ markedly in practice), and the fact that the theoretical comptitiveness of LRU is much larger than observed in practice, In addition, we would like to address the following important question: given some knowledge of a program?s reference pattern, can we use it to improve paging performance on that program? We address these concerns by introducing an important practical element that underlies the philosophy behind paging: locality of reference. We devise a graph-theoretical model, the access graph, for studying locality of reference. We use it to prove results that address the practical concerns mentioned above, In addition, we use our model to address the following questions: How well is LRU likely to perform on a given program? Is there a universal paging algorithm that achieves (nearly) the best possible paging performance on every program? We do so without compromising the benefits of the Sleator-Tarjan model, while bringing it closer to practice.