Predicting protein properties such as solvent accessibility and secondary structure from its primary amino acid sequence is an important task in bioinformatics. Recently, a few deep learning models have surpassed the traditional window based multilayer perceptron. Taking inspiration from the image classification domain we propose a deep convolutional neural network architecture, MUST-CNN, to predict protein properties. This architecture uses a novel multilayer shift-and-stitch (MUST) technique to generate fully dense per-position predictions on protein sequences. Our model is significantly simpler than the state-of-the-art, yet achieves better results. By combining MUST and the efficient convolution operation, we can consider far more parameters while retaining very fast prediction speeds. We beat the state-of-the-art performance on two large protein property prediction datasets.
In the image domain, @cite_15 has beaten the state-of-the-art on image classification by a large percentage through using a deep multilayer convolutional network in the ImageNet Large-Scale Visual Recognition Challenge. Scene labeling is the task of labeling each pixel of an image with one of several classes, a 2D analogue of protein property prediction. @cite_19 uses a recurrent neural network to obtain state-of-the-art results on scene labeling without any feature engineering. @cite_24 designs fully convolutional networks for dense pixel prediction by running several convolutional networks on different scales. @cite_20 increases the resolution of a bounding box based image classifier by introducing the shift-and-stitch technique, which we use on sequences instead of images and on the entire model instead of only on the last layer.
@cite_24 @cite_19 @cite_15 @cite_20
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Deep convolution neural networks (CNN) have demonstrated advanced performance on single-label image classification, and various progress also have been made to apply CNN methods on multi-label image classification, which requires to annotate objects, attributes, scene categories etc. in a single shot. Recent state-of-the-art approaches to multi-label image classification exploit the label dependencies in an image, at global level, largely improving the labeling capacity. However, predicting small objects and visual concepts is still challenging due to the limited discrimination of the global visual features. In this paper, we propose a Regional Latent Semantic Dependencies model (RLSD) to address this problem. The utilized model includes a fully convolutional localization architecture to localize the regions that may contain multiple highly-dependent labels. The localized regions are further sent to the recurrent neural networks (RNN) to characterize the latent semantic dependencies at the regional level. Experimental results on several benchmark datasets show that our proposed model achieves the best performance compared to the state-of-the-art models, especially for predicting small objects occurred in the images. In addition, we set up an upper bound model (RLSD+ft-RPN) using bounding box coordinates during training, the experimental results also show that our RLSD can approach the upper bound without using the bounding-box annotations, which is more realistic in the real world. Deep convolution neural networks (CNNs) have demonstrated advanced performance on single-label image classification, and various progress also has been made to apply CNN methods on multilabel image classification, which requires annotating objects, attributes, scene categories, etc., in a single shot. Recent state-of-the-art approaches to the multilabel image classification exploit the label dependencies in an image, at the global level, largely improving the labeling capacity. However, predicting small objects and visual concepts is still challenging due to the limited discrimination of the global visual features. In this paper, we propose a regional latent semantic dependencies model (RLSD) to address this problem. The utilized model includes a fully convolutional localization architecture to localize the regions that may contain multiple highly dependent labels. The localized regions are further sent to the recurrent neural networks to characterize the latent semantic dependencies at the regional level. Experimental results on several benchmark datasets show that our proposed model achieves the best performance compared to the state-of-the-art models, especially for predicting small objects occurring in the images. Also, we set up an upper bound model (RLSD+ft-RPN) using bounding-box coordinates during training, and the experimental results also show that our RLSD can approach the upper bound without using the bounding-box annotations, which is more realistic in the real world. Learning efficient image representations is at the core of the scene classification task of remote sensing imagery. The existing methods for solving the scene classification task, based on either feature coding approaches with low-level hand-engineered features or unsupervised feature learning, can only generate mid-level image features with limited representative ability, which essentially prevents them from achieving better performance. Recently, the deep convolutional neural networks (CNNs), which are hierarchical architectures trained on large-scale datasets, have shown astounding performance in object recognition and detection. However, it is still not clear how to use these deep convolutional neural networks for high-resolution remote sensing (HRRS) scene classification. In this paper, we investigate how to transfer features from these successfully pre-trained CNNs for HRRS scene classification. We propose two scenarios for generating image features via extracting CNN features from different layers. In the first scenario, the activation vectors extracted from fully-connected layers are regarded as the final image features; in the second scenario, we extract dense features from the last convolutional layer at multiple scales and then encode the dense features into global image features through commonly used feature coding approaches. Extensive experiments on two public scene classification datasets demonstrate that the image features obtained by the two proposed scenarios, even with a simple linear classifier, can result in remarkable performance and improve the state-of-the-art by a significant margin. The results reveal that the features from pre-trained CNNs generalize well to HRRS datasets and are more expressive than the low- and mid-level features. Moreover, we tentatively combine features extracted from different CNN models for better performance. This paper introduces WILDCAT, a deep learning method which jointly aims at aligning image regions for gaining spatial invariance and learning strongly localized features. Our model is trained using only global image labels and is devoted to three main visual recognition tasks: image classification, weakly supervised object localization and semantic segmentation. WILDCAT extends state-of-the-art Convolutional Neural Networks at three main levels: the use of Fully Convolutional Networks for maintaining spatial resolution, the explicit design in the network of local features related to different class modalities, and a new way to pool these features to provide a global image prediction required for weakly supervised training. Extensive experiments show that our model significantly outperforms state-of-the-art methods. A major challenge in scaling object detection is the difficulty of obtaining labeled images for large numbers of categories. Recently, deep convolutional neural networks (CNNs) have emerged as clear winners on object classification benchmarks, in part due to training with 1.2M+ labeled classification images. Unfortunately, only a small fraction of those labels are available for the detection task. It is much cheaper and easier to collect large quantities of image-level labels from search engines than it is to collect detection data and label it with precise bounding boxes. In this paper, we propose Large Scale Detection through Adaptation (LSDA), an algorithm which learns the difference between the two tasks and transfers this knowledge to classifiers for categories without bounding box annotated data, turning them into detectors. Our method has the potential to enable detection for the tens of thousands of categories that lack bounding box annotations, yet have plenty of classification data. Evaluation on the ImageNet LSVRC-2013 detection challenge demonstrates the efficacy of our approach. This algorithm enables us to produce a >7.6K detector by using available classification data from leaf nodes in the ImageNet tree. We additionally demonstrate how to modify our architecture to produce a fast detector (running at 2fps for the 7.6K detector). Models and software are available at Deep convolutional neural networks have recently achieved state-of-the-art performance on a number of image recognition benchmarks, including the ImageNet Large-Scale Visual Recognition Challenge (ILSVRC-2012). The winning model on the localization sub-task was a network that predicts a single bounding box and a confidence score for each object category in the image. Such a model captures the whole-image context around the objects but cannot handle multiple instances of the same object in the image without naively replicating the number of outputs for each instance. In this work, we propose a saliency-inspired neural network model for detection, which predicts a set of class-agnostic bounding boxes along with a single score for each box, corresponding to its likelihood of containing any object of interest. The model naturally handles a variable number of instances for each class and allows for cross-class generalization at the highest levels of the network. We are able to obtain competitive recognition performance on VOC2007 and ILSVRC2012, while using only the top few predicted locations in each image and a small number of neural network evaluations. A major challenge in scaling object detection is the difficulty of obtaining labeled images for large numbers of categories. Recently, deep convolutional neural networks (CNNs) have emerged as clear winners on object classification benchmarks, in part due to training with 1.2M+ labeled classification images. Unfortunately, only a small fraction of those labels are available for the detection task. It is much cheaper and easier to collect large quantities of image-level labels from search engines than it is to collect detection data and label it with precise bounding boxes. In this paper, we propose Large Scale Detection through Adaptation (LSDA), an algorithm which learns the difference between the two tasks and transfers this knowledge to classifiers for categories without bounding box annotated data, turning them into detectors. Our method has the potential to enable detection for the tens of thousands of categories that lack bounding box annotations, yet have plenty of classification data. Evaluation on the ImageNet LSVRC-2013 detection challenge demonstrates the efficacy of our approach. This algorithm enables us to produce a >7.6K detector by using available classification data from leaf nodes in the ImageNet tree. We additionally demonstrate how to modify our architecture to produce a fast detector (running at 2fps for the 7.6K detector). Models and software are available at lsda.berkeleyvision.org. Successful methods for visual object recognition typically rely on training datasets containing lots of richly annotated images. Detailed image annotation, e.g. by object bounding boxes, however, is both expensive and often subjective. We describe a weakly supervised convolutional neural network (CNN) for object classification that relies only on image-level labels, yet can learn from cluttered scenes containing multiple objects. We quantify its object classification and object location prediction performance on the Pascal VOC 2012 (20 object classes) and the much larger Microsoft COCO (80 object classes) datasets. We find that the network (i) outputs accurate image-level labels, (ii) predicts approximate locations (but not extents) of objects, and (iii) performs comparably to its fully-supervised counterparts using object bounding box annotation for training. The goal of the scene labeling task is to assign a class label to each pixel in an image. To ensure a good visual coherence and a high class accuracy, it is essential for a model to capture long range (pixel) label dependencies in images. In a feed-forward architecture, this can be achieved simply by considering a sufficiently large input context patch, around each pixel to be labeled. We propose an approach that consists of a recurrent convolutional neural network which allows us to consider a large input context while limiting the capacity of the model. Contrary to most standard approaches, our method does not rely on any segmentation technique nor any task-specific features. The system is trained in an end-to-end manner over raw pixels, and models complex spatial dependencies with low inference cost. As the context size increases with the built-in recurrence, the system identifies and corrects its own errors. Our approach yields state-of-the-art performance on both the Stanford Background Dataset and the SIFT Flow Dataset, while remaining very fast at test time. Semantic image segmentation is a basic street scene understanding task in autonomous driving, where each pixel in a high resolution image is categorized into a set of semantic labels. Unlike other scenarios, objects in autonomous driving scene exhibit very large scale changes, which poses great challenges for high-level feature representation in a sense that multi-scale information must be correctly encoded. To remedy this problem, atrous convolution[14]was introduced to generate features with larger receptive fields without sacrificing spatial resolution. Built upon atrous convolution, Atrous Spatial Pyramid Pooling (ASPP)[2] was proposed to concatenate multiple atrous-convolved features using different dilation rates into a final feature representation. Although ASPP is able to generate multi-scale features, we argue the feature resolution in the scale-axis is not dense enough for the autonomous driving scenario. To this end, we propose Densely connected Atrous Spatial Pyramid Pooling (DenseASPP), which connects a set of atrous convolutional layers in a dense way, such that it generates multi-scale features that not only cover a larger scale range, but also cover that scale range densely, without significantly increasing the model size. We evaluate DenseASPP on the street scene benchmark Cityscapes[4] and achieve state-of-the-art performance. Convolutional neural networks (CNNs) have made remarkable progress on scene recognition, partially due to these recent large-scale scene datasets, such as the Places and Places2. Scene categories are often defined by multi-level information, including local objects, global layout, and background environment, thus leading to large intra-class variations. In addition, with the increasing number of scene categories, label ambiguity has become another crucial issue in large-scale classification. This paper focuses on large-scale scene recognition and makes two major contributions to tackle these issues. First, we propose a multi-resolution CNN architecture that captures visual content and structure at multiple levels. The multi-resolution CNNs are composed of coarse resolution CNNs and fine resolution CNNs, which are complementary to each other. Second, we design two knowledge guided disambiguation techniques to deal with the problem of label ambiguity: 1) we exploit the knowledge from the confusion matrix computed on validation data to merge ambiguous classes into a super category and 2) we utilize the knowledge of extra networks to produce a soft label for each image. Then, the super categories or soft labels are employed to guide CNN training on the Places2. We conduct extensive experiments on three large-scale image datasets (ImageNet, Places, and Places2), demonstrating the effectiveness of our approach. Furthermore, our method takes part in two major scene recognition challenges, and achieves the second place at the Places2 challenge in ILSVRC 2015, and the first place at the LSUN challenge in CVPR 2016. Finally, we directly test the learned representations on other scene benchmarks, and obtain the new state-of-the-art results on the MIT Indoor67 (86.7 ) and SUN397 (72.0 ). We release the code and models at https: github.com wanglimin MRCNN-Scene-Recognition . Recent approaches for instance-aware semantic labeling have augmented convolutional neural networks (CNNs) with complex multi-task architectures or computationally expensive graphical models. We present a method that leverages a fully convolutional network (FCN) to predict semantic labels, depth and an instance-based encoding using each pixel’s direction towards its corresponding instance center. Subsequently, we apply low-level computer vision techniques to generate state-of-the-art instance segmentation on the street scene datasets KITTI and Cityscapes. Our approach outperforms existing works by a large margin and can additionally predict absolute distances of individual instances from a monocular image as well as a pixel-level semantic labeling. We investigate multiple techniques to improve upon the current state of the art deep convolutional neural network based image classification pipeline. The techiques include adding more image transformations to training data, adding more transformations to generate additional predictions at test time and using complementary models applied to higher resolution images. This paper summarizes our entry in the Imagenet Large Scale Visual Recognition Challenge 2013. Our system achieved a top 5 classification error rate of 13.55 using no external data which is over a 20 relative improvement on the previous year's winner. Depth estimation from single monocular images is a key component of scene understanding and has benefited largely from deep convolutional neural networks (CNN) recently. In this article, we take advantage of the recent deep residual networks and propose a simple yet effective approach to this problem. We formulate depth estimation as a pixel-wise classification task. Specifically, we first discretize the continuous depth values into multiple bins and label the bins according to their depth range. Then we train fully convolutional deep residual networks to predict the depth label of each pixel. Performing discrete depth label classification instead of continuous depth value regression allows us to predict a confidence in the form of probability distribution. We further apply fully-connected conditional random fields (CRF) as a post processing step to enforce local smoothness interactions, which improves the results. We evaluate our approach on both indoor and outdoor datasets and achieve state-of-the-art performance. This paper describes a deep learning approach to semantic segmentation of very high resolution (aerial) images. Deep neural architectures hold the promise of end-to-end learning from raw images, making heuristic feature design obsolete. Over the last decade this idea has seen a revival, and in recent years deep convolutional neural networks (CNNs) have emerged as the method of choice for a range of image interpretation tasks like visual recognition and object detection. Still, standard CNNs do not lend themselves to per-pixel semantic segmentation, mainly because one of their fundamental principles is to gradually aggregate information over larger and larger image regions, making it hard to disentangle contributions from different pixels. Very recently two extensions of the CNN framework have made it possible to trace the semantic information back to a precise pixel position: deconvolutional network layers undo the spatial downsampling, and Fully Convolution Networks (FCNs) modify the fully connected classification layers of the network in such a way that the location of individual activations remains explicit. We design a FCN which takes as input intensity and range data and, with the help of aggressive deconvolution and recycling of early network layers, converts them into a pixelwise classification at full resolution. We discuss design choices and intricacies of such a network, and demonstrate that an ensemble of several networks achieves excellent results on challenging data such as the ISPRS semantic labeling benchmark, using only the raw data as input. We consider the problem of semantic image segmentation using deep convolutional neural networks. We propose a novel network architecture called the label refinement network that predicts segmentation labels in a coarse-to-fine fashion at several resolutions. The segmentation labels at a coarse resolution are used together with convolutional features to obtain finer resolution segmentation labels. We define loss functions at several stages in the network to provide supervisions at different stages. Our experimental results on several standard datasets demonstrate that the proposed model provides an effective way of producing pixel-wise dense image labeling. Scene parsing is a technique that consist on giving a label to all pixels in an image according to the class they belong to. To ensure a good visual coherence and a high class accuracy, it is essential for a scene parser to capture image long range dependencies. In a feed-forward architecture, this can be simply achieved by considering a sufficiently large input context patch, around each pixel to be labeled. We propose an approach consisting of a recurrent convolutional neural network which allows us to consider a large input context, while limiting the capacity of the model. Contrary to most standard approaches, our method does not rely on any segmentation methods, nor any task-specific features. The system is trained in an end-to-end manner over raw pixels, and models complex spatial dependencies with low inference cost. As the context size increases with the built-in recurrence, the system identifies and corrects its own errors. Our approach yields state-of-the-art performance on both the Stanford Background Dataset and the SIFT Flow Dataset, while remaining very fast at test time. Scene labeling can be seen as a sequence-sequence prediction task (pixels-labels), and it is quite important to leverage relevant context to enhance the performance of pixel classification. In this paper, we introduce an episodic attention-based memory network to achieve the goal. We present a unified framework that mainly consists of a Convolutional Neural Network (CNN), specifically, Fully Convolutional Network (FCN) and an attention-based memory module with feedback connections to perform context selection and refinement. The full model produces context-aware representation for each target patch by aggregating the activated context and its original local representation produced by the convolution layers. We evaluate our model on PASCAL Context, SIFT Flow and PASCAL VOC 2011 datasets and achieve competitive results to other state-of-the-art methods in scene labeling. Scene recognition is one of the hallmark tasks of computer vision, allowing definition of a context for object recognition. Whereas the tremendous recent progress in object recognition tasks is due to the availability of large datasets like ImageNet and the rise of Convolutional Neural Networks (CNNs) for learning high-level features, performance at scene recognition has not attained the same level of success. This may be because current deep features trained from ImageNet are not competitive enough for such tasks. Here, we introduce a new scene-centric database called Places with over 7 million labeled pictures of scenes. We propose new methods to compare the density and diversity of image datasets and show that Places is as dense as other scene datasets and has more diversity. Using CNN, we learn deep features for scene recognition tasks, and establish new state-of-the-art results on several scene-centric datasets. A visualization of the CNN layers' responses allows us to show differences in the internal representations of object-centric and scene-centric networks. We propose a novel deep architecture, SegNet, for semantic pixel wise image labelling. SegNet has several attractive properties; (i) it only requires forward evaluation of a fully learnt function to obtain smooth label predictions, (ii) with increasing depth, a larger context is considered for pixel labelling which improves accuracy, and (iii) it is easy to visualise the effect of feature activation(s) in the pixel label space at any depth. SegNet is composed of a stack of encoders followed by a corresponding decoder stack which feeds into a soft-max classification layer. The decoders help map low resolution feature maps at the output of the encoder stack to full input image size feature maps. This addresses an important drawback of recent deep learning approaches which have adopted networks designed for object categorization for pixel wise labelling. These methods lack a mechanism to map deep layer feature maps to input dimensions. They resort to ad hoc methods to upsample features, e.g. by replication. This results in noisy predictions and also restricts the number of pooling layers in order to avoid too much upsampling and thus reduces spatial context. SegNet overcomes these problems by learning to map encoder outputs to image pixel labels. We test the performance of SegNet on outdoor RGB scenes from CamVid, KITTI and indoor scenes from the NYU dataset. Our results show that SegNet achieves state-of-the-art performance even without use of additional cues such as depth, video frames or post-processing with CRF models.