Recommender systems have become important tools to support users in identifying relevant content in an overloaded information space. To ease the development of recommender systems, a number of recommender frameworks have been proposed that serve a wide range of application domains. Our TagRec framework is one of the few examples of an open-source framework tailored towards developing and evaluating tag-based recommender systems. In this paper, we present the current, updated state of TagRec, and we summarize and reflect on four use cases that have been implemented with TagRec: (i) tag recommendations, (ii) resource recommendations, (iii) recommendation evaluation, and (iv) hashtag recommendations. To date, TagRec served the development and or evaluation process of tag-based recommender systems in two large scale European research projects, which have been described in 17 research papers. Thus, we believe that this work is of interest for both researchers and practitioners of tag-based recommender systems.
A considerable contribution to this area is http: wiki.librec.net doku.php , a Java-based library that, so far, comprises around 70 resource recommendation algorithms and evaluation modules @cite_6 . Another Java-based, open-source framework is http: ranksys.org , which focuses on the evaluation of ranking problems and supports the investigation of novelty as well as diversity for academic research @cite_29 , which is reflected in its design (e.g., data input interfaces work with a triple of user, item and features).
@cite_29 @cite_6
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The large array of recommendation algorithms proposed over the years brings a challenge in reproducing and comparing their performance. This paper introduces an open-source Java library that implements a suite of state-of-the-art algorithms as well as a series of evaluation metrics. We empirically find that LibRec performs faster than other such libraries, while achieving competitive evaluative performance. Summary: We describe multiple methods for accessing and querying the complex and integrated cellular data in the BioCyc family of databases: access through multiple file formats, access through Application Program Interfaces (APIs) for LISP, Perl and Java, and SQL access through the BioWarehouse relational database. Availability: The Pathway Tools software and 20 BioCyc DBs in Tiers 1 and 2 are freely available to academic users; fees apply to some types of commercial use. For download instructions see http: BioCyc.org download.shtml Supplementary information: For more details on programmatic access to BioCyc DBs, see http: bioinformatics.ai.sri.com ptools ptools-resources.html Contact: [email protected] The JUNG (Java Universal Network Graph) Framework is a free, open-source software library that provides a common and extendible language for the manipulation, analysis, and visualization of data that can be represented as a graph or network. It is written in the Java programming language, allowing JUNG-based applications to make use of the extensive built-in capabilities of the Java Application Programming Interface (API), as well as those of other existing third-party Java libraries. We describe the design, and some details of the implementation, of the JUNG architecture, and provide illustrative examples of its use. While recommendation approaches exploiting different input sources have started to proliferate in the literature, an explicit study of the effect of the combination of heterogeneous inputs is still missing. On the other hand, in this context there are sides to recommendation quality requiring further characterisation and methodological research - a gap that is acknowledged in the field. We present a comparative study on the influence that different types of information available in social systems have on item recommendation. Aiming to identify which sources of user interest evidence - tags, social contacts, and user-item interaction data - are more effective to achieve useful recommendations, and in what aspect, we evaluate a number of content-based, collaborative filtering, and social recommenders on three datasets obtained from Delicious, Last.fm, and MovieLens. Aiming to determine whether and how combining such information sources may enhance over individual recommendation approaches, we extend the common accuracy-oriented evaluation practice with various metrics to measure further recommendation quality dimensions, namely coverage, diversity, novelty, overlap, and relative diversity between ranked item recommendations. We report empiric observations showing that exploiting tagging information by content-based recommenders provides high coverage and novelty, and combining social networking and collaborative filtering information by hybrid recommenders results in high accuracy and diversity. This, along with the fact that recommendation lists from the evaluated approaches had low overlap and relative diversity values between them, gives insights that meta-hybrid recommenders combining the above strategies may provide valuable, balanced item suggestions in terms of performance and non-performance metrics. Summary: ImgLib2 is an open-source Java library for n-dimensional data representation and manipulation with focus on image processing. It aims at minimizing code duplication by cleanly separating pixel-algebra, data access and data representation in memory. Algorithms can be implemented for classes of pixel types and generic access patterns by which they become independent of the specific dimensionality, pixel type and data representation. ImgLib2 illustrates that an elegant high-level programming interface can be achieved without sacrificing performance. It provides efficient implementations of common data types, storage layouts and algorithms. It is the data model underlying ImageJ2, the KNIME Image Processing toolbox and an increasing number of Fiji-Plugins. Availability: ImgLib2 is licensed under BSD. Documentation and source code are available at http: imglib2.net and in a public repository at https: github.com imagej imglib. Supplementary Information: Supplementary data are available at Bioinformatics Online. Contact: ed.gbc-ipm@dleflaas MADlib is a free, open-source library of in-database analytic methods. It provides an evolving suite of SQL-based algorithms for machine learning, data mining and statistics that run at scale within a database engine, with no need for data import export to other tools. The goal is for MADlib to eventually serve a role for scalable database systems that is similar to the CRAN library for R: a community repository of statistical methods, this time written with scale and parallelism in mind. In this paper we introduce the MADlib project, including the background that led to its beginnings, and the motivation for its open-source nature. We provide an overview of the library's architecture and design patterns, and provide a description of various statistical methods in that context. We include performance and speedup results of a core design pattern from one of those methods over the Greenplum parallel DBMS on a modest-sized test cluster. We then report on two initial efforts at incorporating academic research into MADlib, which is one of the project's goals. MADlib is freely available at http: madlib.net, and the project is open for contributions of both new methods, and ports to additional database platforms. The BGSLibrary has been designed to provides an easy-to-use C++ framework and tools to perform background subtraction. First released in March 2012, currently the library offers 32 background subtraction algorithms. The source code is available under GNU GPL v3 license and the library is free for non-commercial use, open source and platform independent. Note that the license of the algorithms included in BGSLibrary not necessarily have the same license of the library. Some authors do not allow that their algorithms will be used for a commercial purpose, first is needed to contact them to ask permission. However, by default, we decided to adopt the GPL-v3 license. The BGSLibrary also provides one Java based GUI (Graphical User Interface) allowing the users to configure the input video-source, region of interest, and the parameters of each BS algorithm. A MFC-based GUI is also provided for a quick access in Windows computers. But, a QT-based GUI is coming for a platform independent usage. To build run the BGSLibrary, it is necessary to have the OpenCV library installed previously. Everyone is invited to collaborate with the BGSLibrary. In this chapter some efforts has been made for how to make and add your contributions in the library. Feel free to contact us to suggest and share your ideas. We are open to innovations! Support for generic programming was added to the Java language in 2004, representing perhaps the most significant change to one of the most widely used programming languages today. Researchers and language designers anticipated this addition would relieve many long-standing problems plaguing developers, but surprisingly, no one has yet measured how generics have been adopted and used in practice. In this paper, we report on the first empirical investigation into how Java generics have been integrated into open source software by automatically mining the history of 40 popular open source Java programs, traversing more than 650 million lines of code in the process. We evaluate five hypotheses and research questions about how Java developers use generics. For example, our results suggest that generics sometimes reduce the number of type casts and that generics are usually adopted by a single champion in a project, rather than all committers. We also offer insights into why some features may be adopted sooner and others features may be held back. Much of the focus of recommender systems research has been on the accurate prediction of users' ratings for unseen items. Recent work has suggested that objectives such as diversity and novelty in recommendations are also important factors in the effectiveness of a recommender system. However, methods that attempt to increase diversity of recommendation lists for all users without considering each user's preference or tolerance for diversity may lead to monotony for some users and to poor recommendations for others. Our goal in this research is to evaluate the hypothesis that users' propensity towards diversity varies greatly and that the diversity of recommendation lists should be consistent with the level of user interest in diverse recommendations. We propose a pre-filtering clustering approach to group users with similar levels of tolerance for diversity. Our contributions are twofold. First, we propose a method for personalizing diversity by performing collaborative filtering independently on different segments of users based on the degree of diversity in their profiles. Secondly, we investigate the accuracy-diversity tradeoffs using the proposed method across different user segments. As part of this evaluation we propose new metrics, adapted from information retrieval, that help us measure the effectiveness of our approach in personalizing diversity. Our experimental evaluation is based on two different datasets: MovieLens movie ratings, and Yelp restaurant reviews. Research increasingly indicates that accuracy cannot be the sole criteria in creating a satisfying recommender from the users' point of view. Other criteria, such as diversity, are emerging as important characteristics for consideration as well. In this paper, we try to address the problem of augmenting users' perception of recommendation diversity by applying an organization interface design method to the commonly used list interface. An in-depth user study was conducted to compare an organization interface with a standard list interface. Our results show that the organization interface indeed effectively increased users' perceived diversity of recommendations, especially perceived categorical diversity. Furthermore, 65 of users preferred the organization interface, versus 20 for the list interface. 70 of users thought the organization interface is better at helping them perceive recommendation diversity versus only 15 for the list interface. In this paper we present SimpleElastix, an extension of SimpleITK designed to bring the Elastix medical image registration library to a wider audience. Elastix is a modular collection of robust C++ image registration algorithms that is widely used in the literature. However, its command-line interface introduces overhead during prototyping, experimental setup, and tuning of registration algorithms. By integrating Elastix with SimpleITK, Elastix can be used as a native library in Python, Java, R, Octave, Ruby, Lua, Tcl and C# on Linux, Mac and Windows. This allows Elastix to intregrate naturally with many development environments so the user can focus more on the registration problem and less on the underlying C++ implementation. As means of demonstration, we show how to register MR images of brains and natural pictures of faces using minimal amount of code. SimpleElastix is open source, licensed under the permissive Apache License Version 2.0 and available at https: github.com kaspermarstal SimpleElastix. Summary form only given. The Programming Language Research Group at Sun Microsystems Laboratories seeks to apply lessons learned from the Java (TM) programming language to the next generation of programming languages. The Java language supports platform-independent parallel programming with explicit multithreading and explicit locks. As part of the DARPA program for High Productivity Computing Systems, we are developing Fortress, a language intended to support large-scale scientific computation. One of the design principles is that parallelism be encouraged everywhere (for example, it is intentionally just a little bit harder to write a sequential loop than a parallel loop). Another is to have fairly rich mechanisms for encapsulation and abstraction; the idea is to have a fairly complicated language for library writers that enable them to write libraries that present a relatively simple set of interfaces to the application programmer. We will discuss ideas for using a rich polymorphic type system to organize multithreading and data distribution on large parallel machines. The net result is similar in some ways to data distribution facilities in other languages such as HPF and Chapel, but more open-ended, because in Fortress the facilities are defined by user-replaceable libraries rather than wired into the compiler. Classical papers are of great help for beginners to get familiar with a new research area. However, digging them out is a difficult problem. This paper proposes Claper, a novel academic recommendation system based on two proven principles: the Principle of Download Persistence and the Principle of Citation Approaching (we prove them based on real-world datasets). The principle of download persistence indicates that classical papers have few decreasing download frequencies since they were published. The principle of citation approaching indicates that a paper which cites a classical paper is likely to cite citations of that classical paper. Our experimental results based on large-scale real-world datasets illustrate Claper can effectively recommend classical papers of high quality to beginners and thus help them enter their research areas. Citations are important in academic dissemination. To help researchers check the completeness of citations while authoring a paper, we introduce a citation recommendation system called RefSeer. Researchers can use it to find related works to cited while authoring papers. It can also be used by reviewers to check the completeness of a paper's references. RefSeer presents both topic based global recommendation and also citation-context based local recommendation. By evaluating the quality of recommendation, we show that such recommendation system can recommend citations with good precision and recall. We also show that our recommendation system is very efficient and scalable. We present in this paper the design of DeepTutor, the first dialoguebased intelligent tutoring system based on Learning Progressions, and its implications for developing the Generalized Framework for Intelligent Tutoring. We also present the design of SEMILAR, a semantic similarity toolkit, that helps researchers investigate and author semantic similarity models for evaluating natural language student inputs in conversatioanl ITSs. DeepTutor has been developed as a web service while SEMILAR is a Java library. Based on our experience with developing DeepTutor and SEMILAR, we contrast three different models for developing a standardized architecture for intelligent tutoring systems: (1) a single-entry web service coupled with XML protocols for queries and data, (2) a bundle of web services, and (3) library-API. Based on the analysis of the three models, recommendations are This paper presents, to our knowledge, the first study on analyzing mathematical expressions to detect academic plagiarism. We make the following contributions. First, we investigate confirmed cases of plagiarism to categorize the similarities of mathematical content commonly found in plagiarized publications. From this investigation, we derive possible feature selection and feature comparison strategies for developing math-based detection approaches and a ground truth for our experiments. Second, we create a test collection by embedding confirmed cases of plagiarism into the NTCIR-11 MathIR Task dataset, which contains approx. 60 million mathematical expressions in 105,120 documents from arXiv.org. Third, we develop a first math-based detection approach by implementing and evaluating different feature comparison approaches using an open source parallel data processing pipeline built using the Apache Flink framework. The best performing approach identifies all but two of our real-world test cases at the top rank and achieves a mean reciprocal rank of 0.86. The results show that mathematical expressions are promising text-independent features to identify academic plagiarism in large collections. To facilitate future research on math-based plagiarism detection, we make our source code and data available. We introduce the publicly available Open Development for Video Surveillance (ODViS) system that is specifically designed to support ongoing research in tracking and video surveillance. The system provides researchers with the ability to prototype tracking and event recognition techniques, to construct and manage ground truth data sets, and to evaluate the performance of these systems within a graphical user interface. Passive tracking and video surveillance systems are receiving an increasing amount of research attention both in academic and industrial laboratories. Meaningful evaluation of these tracking and surveillance systems is an important but often difficult task. Recent introduction of standard datasets for video surveillance systems, and a corresponding dialog related to empirical analysis have made significant progress [1]. The ODViS system is designed to complement these efforts by providing an Application Programming Interface (API) that allows researchers to link specific surveillance modules into the ODViS framework, a graphical interface for visualizing the behavior of tracking algorithms, and a performance evaluation component that supports comparison of different surveillance modules to one another or predefined ground truth. In this paper we present Net alyzr, a network measurement and debugging service that evaluates the functionality provided by people's Internet connectivity. The design aims to prove both comprehensive in terms of the properties we measure and easy to employ and understand for users with little technical background. We structure Net alyzr as a signed Java applet (which users access via their Web browser) that communicates with a suite of measurement-specific servers. Traffic between the two then probes for a diverse set of network properties, including outbound port filtering, hidden in-network HTTP caches, DNS manipulations, NAT behavior, path MTU issues, IPv6 support, and access-modem buffer capacity. In addition to reporting results to the user, Net alyzr also forms the foundation for an extensive measurement of edge-network properties. To this end, along with describing Net alyzr 's architecture and system implementation, we present a detailed study of 130,000 measurement sessions that the service has recorded since we made it publicly available in June 2009. Recent empirical studies have investigated the use of source code metrics to predict the change- and defect-proneness of source code files and classes. While results showed strong correlations and good predictive power of these metrics, they do not distinguish between interface, abstract or concrete classes. In particular, interfaces declare contracts that are meant to remain stable during the evolution of a software system while the implementation in concrete classes is more likely to change. This paper aims at investigating to which extent the existing source code metrics can be used for predicting change-prone Java interfaces. We empirically investigate the correlation between metrics and the number of fine-grained source code changes in interfaces of ten Java open-source systems. Then, we evaluate the metrics to calculate models for predicting change-prone Java interfaces. Our results show that the external interface cohesion metric exhibits the strongest correlation with the number of source code changes. This metric also improves the performance of prediction models to classify Java interfaces into change-prone and not change-prone. Novelty and diversity have been identified, along with accuracy, as foremost properties of useful recommendations. Considerable progress has been made in the field in terms of the definition of methods to enhance such properties, as well as methodologies and metrics to assess how well such methods work. In this chapter we give an overview of the main contributions to this area in the field of recommender systems, and seek to relate them together in a unified view, analyzing the common elements underneath the different forms under which novelty and diversity have been addressed, and identifying connections to closely related work on diversity in other fields.