We examine two fundamental tasks associated with graph representation learning: link prediction and semi-supervised node classification. We present a densely connected autoencoder architecture capable of learning a joint representation of both local graph structure and available external node features for the multi-task learning of link prediction and node classification. To the best of our knowledge, this is the first architecture that can be efficiently trained end-to-end in a single learning stage to simultaneously perform link prediction and node classification. We provide comprehensive empirical evaluation of our models on a range of challenging benchmark graph-structured datasets, and demonstrate significant improvement in accuracy over related methods for graph representation learning. Code implementation is available at this https URL
The field of graph representation learning is seeing a resurgence of research interest in recent years, driven in part by the latest advances in deep learning. The aim is to learn a mapping that encodes the input graph into low-dimensional feature embeddings while preserving its original global structure. @cite_14 succinctly articulate the diverse set of previously proposed approaches for graph representation learning, or graph embedding, as belonging within a unified encoder-decoder framework. In this section, we summarize three classes of encoder-decoder models most related to our work: matrix factorization (MF), autoencoders, and graph convolutional networks (GCNs).
@cite_14
2755092149
Machine learning on graphs is an important and ubiquitous task with applications ranging from drug design to friendship recommendation in social networks. The primary challenge in this domain is finding a way to represent, or encode, graph structure so that it can be easily exploited by machine learning models. Traditionally, machine learning approaches relied on user-defined heuristics to extract features encoding structural information about a graph (e.g., degree statistics or kernel functions). However, recent years have seen a surge in approaches that automatically learn to encode graph structure into low-dimensional embeddings, using techniques based on deep learning and nonlinear dimensionality reduction. Here we provide a conceptual review of key advancements in this area of representation learning on graphs, including matrix factorization-based methods, random-walk based algorithms, and graph neural networks. We review methods to embed individual nodes as well as approaches to embed entire (sub)graphs. In doing so, we develop a unified framework to describe these recent approaches, and we highlight a number of important applications and directions for future work. Graph embedding is an effective method to represent graph data in a low dimensional space for graph analytics. Most existing embedding algorithms typically focus on preserving the topological structure or minimizing the reconstruction errors of graph data, but they have mostly ignored the data distribution of the latent codes from the graphs, which often results in inferior embedding in real-world graph data. In this paper, we propose a novel adversarial graph embedding framework for graph data. The framework encodes the topological structure and node content in a graph to a compact representation, on which a decoder is trained to reconstruct the graph structure. Furthermore, the latent representation is enforced to match a prior distribution via an adversarial training scheme. To learn a robust embedding, two variants of adversarial approaches, adversarially regularized graph autoencoder (ARGA) and adversarially regularized variational graph autoencoder (ARVGA), are developed. Experimental studies on real-world graphs validate our design and demonstrate that our algorithms outperform baselines by a wide margin in link prediction, graph clustering, and graph visualization tasks. We present HARP, a novel method for learning low dimensional embeddings of a graph's nodes which preserves higher-order structural features. Our proposed method achieves this by compressing the input graph prior to embedding it, effectively avoiding troublesome embedding configurations (i.e. local minima) which can pose problems to non-convex optimization. HARP works by finding a smaller graph which approximates the global structure of its input. This simplified graph is used to learn a set of initial representations, which serve as good initializations for learning representations in the original, detailed graph. We inductively extend this idea, by decomposing a graph in a series of levels, and then embed the hierarchy of graphs from the coarsest one to the original graph. HARP is a general meta-strategy to improve all of the state-of-the-art neural algorithms for embedding graphs, including DeepWalk, LINE, and Node2vec. Indeed, we demonstrate that applying HARP's hierarchical paradigm yields improved implementations for all three of these methods, as evaluated on both classification tasks on real-world graphs such as DBLP, BlogCatalog, CiteSeer, and Arxiv, where we achieve a performance gain over the original implementations by up to 14 Macro F1. Graphs are a fundamental abstraction for modeling relational data. However, graphs are discrete and combinatorial in nature, and learning representations suitable for machine learning tasks poses statistical and computational challenges. In this work, we propose Graphite an algorithmic framework for unsupervised learning of representations over nodes in a graph using deep latent variable generative models. Our model is based on variational autoencoders (VAE), and differs from existing VAE frameworks for data modalities such as images, speech, and text in the use of graph neural networks for parameterizing both the generative model (i.e., decoder) and inference model (i.e., encoder). The use of graph neural networks directly incorporates inductive biases due to the spatial, local structure of graphs directly in the generative model. Moreover, we draw novel connections between graph neural networks and approximate inference via kernel embeddings of distributions. We demonstrate empirically that Graphite outperforms state-of-the-art approaches for the tasks of density estimation, link prediction, and node classification on synthetic and benchmark datasets. Structural pattern recognition approaches offer the most expressive, convenient, powerful but computational expensive representations of underlying relational information. To benefit from mature, less expensive and efficient state-of-the-art machine learning models of statistical pattern recognition they must be mapped to a low-dimensional vector space. Our method of explicit graph embedding bridges the gap between structural and statistical pattern recognition. We extract the topological, structural and attribute information from a graph and encode numeric details by fuzzy histograms and symbolic details by crisp histograms. The histograms are concatenated to achieve a simple and straightforward embedding of graph into a low-dimensional numeric feature vector. Experimentation on standard public graph datasets shows that our method outperforms the state-of-the-art methods of graph embedding for richly attributed graphs. Highlights? We propose an explicit graph embedding method. ? We perform multilevel analysis of graph to extract global, topological structural and attribute information. ? We use homogeneity of subgraphs in graph for extracting topological structural details. ? We encode numeric information by fuzzy histograms and symbolic information by crisp histograms. ? Our method outperforms graph embedding methods for richly attributed graphs. Network embedding methods aim at learning low-dimensional latent representation of nodes in a network. These representations can be used as features for a wide range of tasks on graphs such as classification, clustering, link prediction, and visualization. In this survey, we give an overview of network embeddings by summarizing and categorizing recent advancements in this research field. We first discuss the desirable properties of network embeddings and briefly introduce the history of network embedding algorithms. Then, we discuss network embedding methods under different scenarios, such as supervised versus unsupervised learning, learning embeddings for homogeneous networks versus for heterogeneous networks, etc. We further demonstrate the applications of network embeddings, and conclude the survey with future work in this area. Single image rain streaks removal has recently witnessed substantial progress due to the development of deep convolutional neural networks. However, existing deep learning based methods either focus on the entrance and exit of the network by decomposing the input image into high and low frequency information and employing residual learning to reduce the mapping range, or focus on the introduction of cascaded learning scheme to decompose the task of rain streaks removal into multi-stages. These methods treat the convolutional neural network as an encapsulated end-to-end mapping module without deepening into the rationality and superiority of neural network design. In this paper, we delve into an effective end-to-end neural network structure for stronger feature expression and spatial correlation learning. Specifically, we propose a non-locally enhanced encoder-decoder network framework, which consists of a pooling indices embedded encoder-decoder network to efficiently learn increasingly abstract feature representation for more accurate rain streaks modeling while perfectly preserving the image detail. The proposed encoder-decoder framework is composed of a series of non-locally enhanced dense blocks that are designed to not only fully exploit hierarchical features from all the convolutional layers but also well capture the long-distance dependencies and structural information. Extensive experiments on synthetic and real datasets demonstrate that the proposed method can effectively remove rain-streaks on rainy image of various densities while well preserving the image details, which achieves significant improvements over the recent state-of-the-art methods. Recently a variety of methods have been developed to encode graphs into low-dimensional vectors that can be easily exploited by machine learning algorithms. The majority of these methods start by embedding the graph nodes into a low-dimensional vector space, followed by using some scheme to aggregate the node embeddings. In this work, we develop a new approach to learn graph-level representations, which includes a combination of unsupervised and supervised learning components. We start by learning a set of node representations in an unsupervised fashion. Graph nodes are mapped into node sequences sampled from random walk approaches approximated by the Gumbel-Softmax distribution. Recurrent neural network (RNN) units are modified to accommodate both the node representations as well as their neighborhood information. Experiments on standard graph classification benchmarks demonstrate that our proposed approach achieves superior or comparable performance relative to the state-of-the-art algorithms in terms of convergence speed and classification accuracy. We further illustrate the effectiveness of the different components used by our approach. Learning low-dimensional representations of networks has proved effective in a variety of tasks such as node classification, link prediction and network visualization. Existing methods can effectively encode different structural properties into the representations, such as neighborhood connectivity patterns, global structural role similarities and other high-order proximities. However, except for objectives to capture network structural properties, most of them suffer from lack of additional constraints for enhancing the robustness of representations. In this paper, we aim to exploit the strengths of generative adversarial networks in capturing latent features, and investigate its contribution in learning stable and robust graph representations. Specifically, we propose an Adversarial Network Embedding (ANE) framework, which leverages the adversarial learning principle to regularize the representation learning. It consists of two components, i.e., a structure preserving component and an adversarial learning component. The former component aims to capture network structural properties, while the latter contributes to learning robust representations by matching the posterior distribution of the latent representations to given priors. As shown by the empirical results, our method is competitive with or superior to state-of-the-art approaches on benchmark network embedding tasks. The objective of knowledge graph embedding is to encode both entities and relations of knowledge graphs into continuous low-dimensional vector spaces. Previously, most works focused on symbolic representation of knowledge graph with structure information, which can not handle new entities or entities with few facts well. In this paper, we propose a novel deep architecture to utilize both structural and textual information of entities. Specifically, we introduce three neural models to encode the valuable information from text description of entity, among which an attentive model can select related information as needed. Then, a gating mechanism is applied to integrate representations of structure and text into a unified architecture. Experiments show that our models outperform baseline by margin on link prediction and triplet classification tasks. Source codes of this paper will be available on Github. Inspired by recent advances in multimodal learning and machine translation, we introduce an encoder-decoder pipeline that learns (a): a multimodal joint embedding space with images and text and (b): a novel language model for decoding distributed representations from our space. Our pipeline effectively unifies joint image-text embedding models with multimodal neural language models. We introduce the structure-content neural language model that disentangles the structure of a sentence to its content, conditioned on representations produced by the encoder. The encoder allows one to rank images and sentences while the decoder can generate novel descriptions from scratch. Using LSTM to encode sentences, we match the state-of-the-art performance on Flickr8K and Flickr30K without using object detections. We also set new best results when using the 19-layer Oxford convolutional network. Furthermore we show that with linear encoders, the learned embedding space captures multimodal regularities in terms of vector space arithmetic e.g. *image of a blue car* - "blue" + "red" is near images of red cars. Sample captions generated for 800 images are made available for comparison. Principal Component Analysis (PCA) is a widely used to learn a low-dimensional representation. In many applications, both vector data X and graph data W are available. Laplacian embedding is widely used for embedding graph data. We propose a graph-Laplacian PCA (gLPCA) to learn a low dimensional representation of X that incorporates graph structures encoded in W. This model has several advantages: (1) It is a data representation model. (2) It has a compact closed-form solution and can be efficiently computed. (3) It is capable to remove corruptions. Extensive experiments on 8 datasets show promising results on image reconstruction and significant improvement on clustering and classification. Deep learning on graphs has become a popular research topic with many applications. However, past work has concentrated on learning graph embedding tasks only, which is in contrast with advances in generative models for images and text. Is it possible to transfer this progress to the domain of graphs? We propose to sidestep hurdles associated with linearization of such discrete structures by having a decoder output a probabilistic fully-connected graph of a predefined maximum size directly at once. Our method is formulated as a variational autoencoder. We evaluate on the challenging task of conditional molecule generation. Low-Rank Representation (LRR) is arguably one of the most powerful paradigms for Multi-view spectral clustering, which elegantly encodes the multi-view local graph manifold structures into an intrinsic low-rank self-expressive data similarity embedded in high-dimensional space, to yield a better graph partition than their single-view counterparts. In this paper we revisit it with a fundamentally different perspective by discovering LRR as essentially a latent clustered orthogonal projection based representation winged with an optimized local graph structure for spectral clustering; each column of the representation is fundamentally a cluster basis orthogonal to others to indicate its members, which intuitively projects the view-specific feature representation to be the one spanned by all orthogonal basis to characterize the cluster structures. Upon this finding, we propose our technique with the following: (1) We decompose LRR into latent clustered orthogonal representation via low-rank matrix factorization, to encode the more flexible cluster structures than LRR over primal data objects; (2) We convert the problem of LRR into that of simultaneously learning orthogonal clustered representation and optimized local graph structure for each view; (3) The learned orthogonal clustered representations and local graph structures enjoy the same magnitude for multi-view, so that the ideal multi-view consensus can be readily achieved. The experiments over multi-view datasets validate its superiority, especially over recent state-of-the-art LRR models. How can we effectively encode evolving information over dynamic graphs into low-dimensional representations? In this paper, we propose DyRep, an inductive deep representation learning framework that learns a set of functions to efficiently produce low-dimensional node embeddings that evolves over time. The learned embeddings drive the dynamics of two key processes namely, communication and association between nodes in dynamic graphs. These processes exhibit complex nonlinear dynamics that evolve at different time scales and subsequently contribute to the update of node embeddings. We employ a time-scale dependent multivariate point process model to capture these dynamics. We devise an efficient unsupervised learning procedure and demonstrate that our approach significantly outperforms representative baselines on two real-world datasets for the problem of dynamic link prediction and event time prediction. It is always well believed that modeling relationships between objects would be helpful for representing and eventually describing an image. Nevertheless, there has not been evidence in support of the idea on image description generation. In this paper, we introduce a new design to explore the connections between objects for image captioning under the umbrella of attention-based encoder-decoder framework. Specifically, we present Graph Convolutional Networks plus Long Short-Term Memory (dubbed as GCN-LSTM) architecture that novelly integrates both semantic and spatial object relationships into image encoder. Technically, we build graphs over the detected objects in an image based on their spatial and semantic connections. The representations of each region proposed on objects are then refined by leveraging graph structure through GCN. With the learnt region-level features, our GCN-LSTM capitalizes on LSTM-based captioning framework with attention mechanism for sentence generation. Extensive experiments are conducted on COCO image captioning dataset, and superior results are reported when comparing to state-of-the-art approaches. More remarkably, GCN-LSTM increases CIDEr-D performance from 120.1 to 128.7 on COCO testing set. Object recognition can be formulated as matching image features to model features. When recognition is exemplar-based, feature correspondence is one-to-one. However, segmentation errors, articulation, scale difference, and within-class deformation can yield image and model features which don't match one-to-one but rather many-to-many. Adopting a graph-based representation of a set of features, we present a matching algorithm that establishes many-to-many correspondences between the nodes of two noisy, vertex-labeled weighted graphs. Our approach reduces the problem of many-to-many matching of weighted graphs to that of many-to-many matching of weighted point sets in a normed vector space. This is accomplished by embedding the initial weighted graphs into a normed vector space with low distortion using a novel embedding technique based on a spherical encoding of graph structure. Many-to-many vector correspondences established by the Earth Mover's Distance framework are mapped back into many-to-many correspondences between graph nodes. Empirical evaluation of the algorithm on an extensive set of recognition trials, including a comparison with two competing graph matching approaches, demonstrates both the robustness and efficacy of the overall approach. Celebrated and its fruitful variants are powerful models to achieve excellent performance on the tasks that map sequences to sequences. However, these are many machine learning tasks with inputs naturally represented in a form of graphs, which imposes significant challenges to existing Seq2Seq models for lossless conversion from its graph form to the sequence. In this work, we present a general end-to-end approach to map the input graph to a sequence of vectors, and then another attention-based LSTM to decode the target sequence from these vectors. Specifically, to address inevitable information loss for data conversion, we introduce a novel graph-to-sequence neural network model that follows the encoder-decoder architecture. Our method first uses an improved graph-based neural network to generate the node and graph embeddings by a novel aggregation strategy to incorporate the edge direction information into the node embeddings. We also propose an attention based mechanism that aligns node embeddings and decoding sequence to better cope with large graphs. Experimental results on bAbI task, Shortest Path Task, and Natural Language Generation Task demonstrate that our model achieves the state-of-the-art performance and significantly outperforms other baselines. We also show that with the proposed aggregation strategy, our proposed model is able to quickly converge to good performance. Recent advancements in deep neural networks for graph-structured data have led to state-of-the-art performance on recommender system benchmarks. However, making these methods practical and scalable to web-scale recommendation tasks with billions of items and hundreds of millions of users remains an unsolved challenge. Here we describe a large-scale deep recommendation engine that we developed and deployed at Pinterest. We develop a data-efficient Graph Convolutional Network (GCN) algorithm, which combines efficient random walks and graph convolutions to generate embeddings of nodes (i.e., items) that incorporate both graph structure as well as node feature information. Compared to prior GCN approaches, we develop a novel method based on highly efficient random walks to structure the convolutions and design a novel training strategy that relies on harder-and-harder training examples to improve robustness and convergence of the model. We also develop an efficient MapReduce model inference algorithm to generate embeddings using a trained model. Overall, we can train on and embed graphs that are four orders of magnitude larger than typical GCN implementations. We show how GCN embeddings can be used to make high-quality recommendations in various settings at Pinterest, which has a massive underlying graph with 3 billion nodes representing pins and boards, and 17 billion edges. According to offline metrics, user studies, as well as A B tests, our approach generates higher-quality recommendations than comparable deep learning based systems. To our knowledge, this is by far the largest application of deep graph embeddings to date and paves the way for a new generation of web-scale recommender systems based on graph convolutional architectures. We propose a neural multi-document summarization (MDS) system that incorporates sentence relation graphs. We employ a Graph Convolutional Network (GCN) on the relation graphs, with sentence embeddings obtained from Recurrent Neural Networks as input node features. Through multiple layer-wise propagation, the GCN generates high-level hidden sentence features for salience estimation. We then use a greedy heuristic to extract salient sentences while avoiding redundancy. In our experiments on DUC 2004, we consider three types of sentence relation graphs and demonstrate the advantage of combining sentence relations in graphs with the representation power of deep neural networks. Our model improves upon traditional graph-based extractive approaches and the vanilla GRU sequence model with no graph, and it achieves competitive results against other state-of-the-art multi-document summarization systems.