The number of leaves a plant has is one of the key traits (phenotypes) describing its development and growth. Here, we propose an automated, deep learning based approach for counting leaves in model rosette plants. While state-of-the-art results on leaf counting with deep learning methods have recently been reported, they obtain the count as a result of leaf segmentation and thus require per-leaf (instance) segmentation to train the models (a rather strong annotation). Instead, our method treats leaf counting as a direct regression problem and thus only requires as annotation the total leaf count per plant. We argue that combining different datasets when training a deep neural network is beneficial and improves the results of the proposed approach. We evaluate our method on the CVPPP 2017 Leaf Counting Challenge dataset, which contains images of Arabidopsis and tobacco plants. Experimental results show that the proposed method significantly outperforms the winner of the previous CVPPP challenge, improving the results by a minimum of 50 on each of the test datasets, and can achieve this performance without knowing the experimental origin of the data (i.e. in the wild setting of the challenge). We also compare the counting accuracy of our model with that of per leaf segmentation algorithms, achieving a 20 decrease in mean absolute difference in count (|DiC|).
Direct count. Leaf counting results using machine learning solutions have been reported in past CVPPP challenges as well as in other independent reports which have identified plant datasets as compelling ways to test models. The winner of the previous CVPPP challenge @cite_9 adopted a direct regression model through support vector regression. The method involved converting the image into a log-polar coordinate system before learning a dictionary of image features in an unsupervised fashion. The features were learned only in regions of interest determined by texture heuristics. The use of the log-polar domain provided the method with rotation and scale invariance, however the scale of the leaves is an important feature to learn, as is can vary considerably within a plant and is directly correlated with the growth stage of the plant. In @cite_25 , the authors used a set of geometrical features to fit several classification and regression models. Using different tools available in WEKA @cite_24 , they found that the Random Subspace method @cite_11 could obtain lowest @math DiC @math only using geometrical features.
@cite_24 @cite_9 @cite_25 @cite_11
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Counting the number of leaves in plants is important for plant phenotyping, since it can be used to assess plant growth stages. We propose a learning-based approach for counting leaves in rosette (model) plants. We relate image-based descriptors learned in an unsupervised fashion to leaf counts using a supervised regression model. To take advantage of the circular and coplanar arrangement of leaves and also to introduce scale and rotation invariance, we learn features in a log-polar representation. Image patches extracted in this log-polar domain are provided to K-means, which builds a codebook in a unsupervised manner. Feature codes are obtained by projecting patches on the codebook using the triangle encoding, introducing both sparsity and specifically designed representation. A global, per-plant image descriptor is obtained by pooling local features in specific regions of the image. Finally, we provide the global descriptors to a support vector regression framework to estimate the number of leaves in a plant. We evaluate our method on datasets of the (LCC), containing images of Arabidopsis and tobacco plants. Experimental results show that on average we reduce absolute counting error by 40 w.r.t. the winner of the 2014 edition of the challenge -a counting via segmentation method. When compared to state-of-the-art density-based approaches to counting, on Arabidopsis image data 75 less counting errors are observed. Our findings suggest that it is possible to treat leaf counting as a regression problem, requiring as input only the total leaf count per training image. Abstract Plant identification systems developed by computer vision researchers have helped botanists to recognize and identify unknown plant species more rapidly. Hitherto, numerous studies have focused on procedures or algorithms that maximize the use of leaf databases for plant predictive modeling, but this results in leaf features which are liable to change with different leaf data and feature extraction techniques. In this paper, we learn useful leaf features directly from the raw representations of input data using Convolutional Neural Networks (CNN), and gain intuition of the chosen features based on a Deconvolutional Network (DN) approach. We report somewhat unexpected results: (1) different orders of venation are the best representative features compared to those of outline shape, and (2) we observe multi-level representation in leaf data, demonstrating the hierarchical transformation of features from lower-level to higher-level abstraction, corresponding to species classes. We show that these findings fit with the hierarchical botanical definitions of leaf characters. Through these findings, we gained insights into the design of new hybrid feature extraction models which are able to further improve the discriminative power of plant classification systems. The source code and models are available at: https: github.com cs-chan Deep-Plant . Agricultural robots are expected to increase yields in a sustainable way and automate precision tasks, such as weeding and plant monitoring. At the same time, they move in a continuously changing, semi-structured field environment, in which features can hardly be found and reproduced at a later time. Challenges for Lidar and visual detection systems stem from the fact that plants can be very small, overlapping and have a steadily changing appearance. Therefore, a popular way to localize vehicles with high accuracy is based on ex- pensive global navigation satellite systems and not on natural landmarks. The contribution of this work is a novel image- based plant localization technique that uses the time-invariant stem emerging point as a reference. Our approach is based on a fully convolutional neural network that learns landmark localization from RGB and NIR image input in an end-to-end manner. The network performs pose regression to generate a plant location likelihood map. Our approach allows us to cope with visual variances of plants both for different species and different growth stages. We achieve high localization accuracies as shown in detailed evaluations of a sugar beet cultivation phase. In experiments with our BoniRob we demonstrate that detections can be robustly reproduced with centimeter accuracy. Background In this paper, a novel method is proposed to identify plant species by using the two- dimensional multifractal detrended fluctuation analysis (2D MF-DFA). Our method involves calculating a set of multifractal parameters that characterize the texture features of each plant leaf image. An index, I0, that characterizes the relation of the intra-species variances and inter-species variances is introduced. This index is used to select three multifractal parameters for the identification process. The procedure is applied to the Swedish leaf data set containing leaves from fifteen different tree species. The use of high-throughput phenotyping systems and non-destructive imaging is widely regarded as a key technology allowing scientists and breeders to develop crops with the ability to perform well under diverse environmental conditions. However, many of these phenotyping studies have been optimized using the model plant Arabidopsis thaliana. In this study, The Plant Accelerator® at The University of Adelaide, Australia, was used to investigate the growth and phenotypic response of the important cereal crop, Sorghum bicolor L. Moench and related hybrids to water-limited conditions and different levels of fertilizer. Imaging in different spectral ranges was used to monitor plant composition, chlorophyll, and moisture content. Phenotypic image analysis accurately measured plant biomass. The data set obtained enabled the responses of the different sorghum varieties to the experimental treatments to be differentiated and modelled. Plant architectural instead of architecture elements were determined using imaging and found to correlate with an improved tolerance to stress, for example diurnal leaf curling and leaf area index. Analysis of colour images revealed that leaf ‘greenness’ correlated with foliar nitrogen and chlorophyll, while near infrared reflectance (NIR) analysis was a good predictor of water content and leaf thickness, and correlated with plant moisture content. It is shown that imaging sorghum using a high-throughput system can accurately identify and differentiate between growth and specific phenotypic traits. R scripts for robust, parsimonious models are provided to allow other users of phenomic imaging systems to extract useful data readily, and thus relieve a bottleneck in phenotypic screening of multiple genotypes of key crop plants. Accurately counting maize tassels is important for monitoring the growth status of maize plants. This tedious task, however, is still mainly done by manual efforts. In the context of modern plant phenotyping, automating this task is required to meet the need of large-scale analysis of genotype and phenotype. In recent years, computer vision technologies have experienced a significant breakthrough due to the emergence of large-scale datasets and increased computational resources. Naturally image-based approaches have also received much attention in plant-related studies. Yet a fact is that most image-based systems for plant phenotyping are deployed under controlled laboratory environment. When transferring the application scenario to unconstrained in-field conditions, intrinsic and extrinsic variations in the wild pose great challenges for accurate counting of maize tassels, which goes beyond the ability of conventional image processing techniques. This calls for further robust computer vision approaches to address in-field variations. This paper studies the in-field counting problem of maize tassels. To our knowledge, this is the first time that a plant-related counting problem is considered using computer vision technologies under unconstrained field-based environment. With 361 field images collected in four experimental fields across China between 2010 and 2015 and corresponding manually-labelled dotted annotations, a novel Maize Tassels Counting (MTC) dataset is created and will be released with this paper. To alleviate the in-field challenges, a deep convolutional neural network-based approach termed TasselNet is proposed. TasselNet can achieve good adaptability to in-field variations via modelling the local visual characteristics of field images and regressing the local counts of maize tassels. Extensive results on the MTC dataset demonstrate that TasselNet outperforms other state-of-the-art approaches by large margins and achieves the overall best counting performance, with a mean absolute error of 6.6 and a mean squared error of 9.6 averaged over 8 test sequences. TasselNet can achieve robust in-field counting of maize tassels with a relatively high degree of accuracy. Our experimental evaluations also suggest several good practices for practitioners working on maize-tassel-like counting problems. It is worth noting that, though the counting errors have been greatly reduced by TasselNet, in-field counting of maize tassels remains an open and unsolved problem. In this paper, an effective shape-based leaf image retrieval system is presented. A new contour descriptor is defined which reduces the number of points for the shape representation considerably. This shape representation is based on the curvature of the leaf contour and it deals with the scale factor in a novel and compact way. A two-step algorithm for retrieval is used. In a first step, the database is reduced using some geometrical features. Then a similarity measure between the contour representations is used to rank conveniently leaf images on the database. We implemented a prototype system based on these features and performed several experiments to show its effectiveness for plant species identification. This paper introduces a method for creating naturally varied plants from a given basic plant model. Previous techniques create variation in plants by introducing local randomness to the plant model's description. However, randomness is restricted by the model's parameterization and lack of correlation between local features making varying global properties (e.g. branch and stem curvature) difficult. We present a biologically−based method which mimics the underpinnings of variation in real plants. This method uses a feedback control system to simulate the biological growth mechanism by which a plant naturally responds to environmental factors. We show that our technique creates more realistically varied models by modelling growth responses to stimuli, and provides a method for quickly creating numerous similar models, none of which are exactly alike. Unmanned aerial vehicles (UAVs) have the potential to significantly impact early detection and monitoring of plant diseases. In this paper, we present preliminary work in developing a UAV-mounted sensor suite for detection of citrus greening disease, a major threat to Florida citrus production. We propose a depth-invariant sensing methodology for measuring reflectance of polarized amber light, a metric which has been found to measure starch accumulation in greening-infected leaves. We describe the implications of adding depth information to this method, including the use of machine learning models to discriminate between healthy and infected leaves with validation accuracies up to 93 . Additionally, we discuss stipulations and challenges of use of the system with UAV platforms. This sensing system has the potential to allow for rapid scanning of groves to determine the spread of the disease, especially in areas where infection is still in early stages, including citrus farms in California. Although presented in the context of citrus greening disease, the methods can be applied to a variety of plant pathology studies, enabling timely monitoring of plant health—impacting scientists, growers, and policymakers. Plant species classification using leaf samples is a challenging and important problem to solve. This paper introduces a new data set of sixteen samples each of one-hundred plant species; and describes a method designed to work in conditions of small training set size and possibly incomplete extraction of features. This motivates a separate processing of three feature types: shape, texture, and margin; combined using a probabilistic framework. The texture and margin features use histogram accumulation, while a normalised description of contour is used for the shape. Two previously published methods are used to generate separate posterior probability vectors for each feature, using data associated with the k-Nearest Neighbour apparatus. The combined posterior estimates produce the final classification (where missing features could be omitted). We show that both density estimators achieved a 96 mean accuracy of classification when combining the three features in this way (training on 15 samples with unseen cross validation). In addition, the framework can provide an upper bound on the Bayes Risk of the classification problem, and thereby assess the accuracy of the density estimators. Lastly, the high performance of the method is demonstrated for small training set sizes: 91 accuracy is observed with only four training samples. We aim to apply sparse autoencoder-based unsupervised feature learning to emotional semantic analysis for textile images. To tackle the problem of limited training data, we present a cross-domain feature learning scheme for emotional textile image classification using convolutional autoencoders. We further propose a correlation-analysis-based feature selection method for the weights learned by sparse autoencoders to reduce the number of features extracted from large size images. First, we randomly collect image patches on an unlabeled image dataset in the source domain and learn local features with a sparse autoencoder. We then conduct feature selection according to the correlation between different weight vectors corresponding to the autoencoder’s hidden units. We finally adopt a convolutional neural network including a pooling layer to obtain global feature activations of textile images in the target domain and send these global feature vectors into logistic regression models for emotional image classification. The cross-domain unsupervised feature learning method achieves 65 to 78 average accuracy in the cross-validation experiments corresponding to eight emotional categories and performs better than conventional methods. Feature selection can reduce the computational cost of global feature extraction by about 50 while improving classification performance. A new form of document coupling called co-citation is defined as the frequency with which two documents are cited together. The co-citation frequency of two scientific papers can be determined by comparing lists of citing documents in the Science Citation Index and counting identical entries. Networks of co-cited papers can be generated for specific scientific specialties, and an example is drawn from the literature of particle physics. Co-citation patterns are found to differ significantly from bibliographic coupling patterns, but to agree generally with patterns of direct citation. Clusters of co-cited papers provide a new way to study the specialty structure of science. They may provide a new approach to indexing and to the creation of SDI profiles. In this paper, we investigate estimating emergence and biomass traits from color images and elevation maps of wheat field plots. We employ a state-of-the-art deconvolutional network for segmentation and convolutional architectures, with residual and Inception-like layers, to estimate traits via high dimensional nonlinear regression. Evaluation was performed on two different species of wheat, grown in field plots for an experimental plant breeding study. Our framework achieves satisfactory performance with mean and standard deviation of absolute difference of 1.05 and 1.40 counts for emergence and 1.45 and 2.05 for biomass estimation. Our results for counting wheat plants from field images are better than the accuracy reported for the similar, but arguably less difficult, task of counting leaves from indoor images of rosette plants. Our results for biomass estimation, even with a very small dataset, improve upon all previously proposed approaches in the literature. We present a recurrent model for semantic instance segmentation that sequentially generates binary masks and their associated class probabilities for every object in an image. Our proposed system is trainable end-to-end from an input image to a sequence of labeled masks and, compared to methods relying on object proposals, does not require post-processing steps on its output. We study the suitability of our recurrent model on three different instance segmentation benchmarks, namely Pascal VOC 2012, CVPPP Plant Leaf Segmentation and Cityscapes. Further, we analyze the object sorting patterns generated by our model and observe that it learns to follow a consistent pattern, which correlates with the activations learned in the encoder part of our network. Source code and models are available at this https URL In a document network such as a citation network of scientific documents, web-logs, etc., the content produced by authors exhibits their interest in certain topics. In addition some authors influence other authors' interests. In this work, we propose to model the influence of cited authors along with the interests of citing authors. Moreover, we hypothesize that apart from the citations present in documents, the context surrounding the citation mention provides extra topical information about the cited authors. However, associating terms in the context to the cited authors remains an open problem. We propose novel document generation schemes that incorporate the context while simultaneously modeling the interests of citing authors and influence of the cited authors. Our experiments show significant improvements over baseline models for various evaluation criteria such as link prediction between document and cited author, and quantitatively explaining unseen text. A citing sentence is one that appears in a scientific article and cites previous work. Citing sentences have been studied and used in many applications. For example, they have been used in scientific paper summarization, automatic survey generation, paraphrase identification, and citation function classification. Citing sentences that cite multiple papers are common in scientific writing. This observation should be taken into consideration when using citing sentences in applications. For instance, when a citing sentence is used in a summary of a scientific paper, only the fragments of the sentence that are relevant to the summarized paper should be included in the summary. In this paper, we present and compare three different approaches for identifying the fragments of a citing sentence that are related to a given target reference. Our methods are: word classification, sequence labeling, and segment classification. Our experiments show that segment classification achieves the best results. Use of machine learning techniques for educational proposes (or educational data mining) is an emerging field aimed at developing methods of exploring data from computational educational settings and discovering meaningful patterns. The stored data (virtual courses, e-learning log file, demographic and academic data of students, admissions registration info, and so on) can be useful for machine learning algorithms. In this article, we cite the most current articles that use machine learning techniques for educational proposes and we present a case study for predicting students' marks. Students' key demographic characteristics and their marks in a small number of written assignments can constitute the training set for a regression method in order to predict the student's performance. Finally, a prototype version of software support tool for tutors has been constructed. This paper presents a multi-output regression model for crowd counting in public scenes. Existing counting by regression methods either learn a single model for global counting, or train a large number of separate regressors for localised density estimation. In contrast, our single regression model based approach is able to estimate people count in spatially localised regions and is more scalable without the need for training a large number of regressors proportional to the number of local regions. In particular, the proposed model automatically learns the functional mapping between interdependent low-level features and multi-dimensional structured outputs. The model is able to discover the inherent importance of different features for people counting at different spatial locations. Extensive evaluations on an existing crowd analysis benchmark dataset and a new more challenging dataset demonstrate the effectiveness of our approach. In this paper we address the problem of counting objects instances in images. Our models are able to precisely estimate the number of vehicles in a traffic congestion, or to count the humans in a very crowded scene. Our first contribution is the proposal of a novel convolutional neural network solution, named Counting CNN (CCNN). Essentially, the CCNN is formulated as a regression model where the network learns how to map the appearance of the image patches to their corresponding object density maps. Our second contribution consists in a scale-aware counting model, the Hydra CNN, able to estimate object densities in different very crowded scenarios where no geometric information of the scene can be provided. Hydra CNN learns a multiscale non-linear regression model which uses a pyramid of image patches extracted at multiple scales to perform the final density prediction. We report an extensive experimental evaluation, using up to three different object counting benchmarks, where we show how our solutions achieve a state-of-the-art performance. Elliptic Fourier (EF) and discriminant analyses were used to identify young soybean (Glycine max (L.) merrill), sunflower (Helianthus pumilus), redroot pigweed (Amaranthus retroflexus) and velvetleaf (Abutilon theophrasti Medicus) plants, based on leaf shape. Chain encoded, Elliptic Fourier harmonic functions were generated based on leaf boundary. A complexity index of the leaf shape was computed using the variation between consecutive EF functions. Principle component analysis was used to select the Fourier coefficients with the best discriminatory power. Canonical discriminant analysis was used to develop species identification models based on leaf shapes extracted from plant color images during the second and third weeks after germination. The classification results showed that plant species during the third week were successfully identified with an average of correct classification rate of 89.4 . The discriminant model correctly classified on average: 77.9 of redroot pigweed, 93.8 of sunflower, 89.4 of velvetleaf and 96.5 of soybean. Using all of the leaves extracted from the second and the third weeks, the overall classification accuracy was 89.2 . The discriminant model correctly classified 76.4 of redroot pigweed, 93.6 of sunflower, 81.6 of velvetleaf, 91.5 of soybean leaf extracted from trifoliolate and 90.9 of soybean unifoliolate leaves. The Elliptic Fourier shape feature analysis could be an important and accurate tool for weed species identification and mapping.