Twitter has been a prominent social media platform for mining population-level health data and accurate clustering of health-related tweets into topics is important for extracting relevant health insights. In this work, we propose deep convolutional autoencoders for learning compact representations of health-related tweets, further to be employed in clustering. We compare our method to several conventional tweet representation methods including bag-of-words, term frequency-inverse document frequency, Latent Dirichlet Allocation and Non-negative Matrix Factorization with 3 different clustering algorithms. Our results show that the clustering performance using proposed representation learning scheme significantly outperforms that of conventional methods for all experiments of different number of clusters. In addition, we propose a constraint on the learned representations during the neural network training in order to further enhance the clustering performance. All in all, this study introduces utilization of deep neural network-based architectures, i.e., deep convolutional autoencoders, for learning informative representations of health-related tweets.
Numerous works on topic modeling of tweets are available as well. Topic models are generative models, relying on the idea that a given tweet is a mixture of topics, where a topic is a probability distribution over words @cite_45 . Even though the objective in topic modeling is slightly different than that of pure clustering, representing each tweet as a topic vector is essentially a way of dimensionality reduction or feature extraction and can further be followed by a clustering algorithm. Proposed topic modeling methods include conventional approaches or variants of them such as Latent Dirichlet Allocation (LDA) @cite_8 @cite_2 @cite_42 @cite_32 @cite_20 @cite_48 @cite_54 @cite_27 @cite_43 @cite_40 @cite_29 and Non-negative Matrix Factorization (NMF) @cite_22 @cite_5 . Note that topic models such as LDA are based on the notion that words belonging to a topic are more likely to appear in the same document and do not assume a distance metric between discovered topics.
@cite_22 @cite_8 @cite_48 @cite_54 @cite_42 @cite_29 @cite_32 @cite_43 @cite_27 @cite_45 @cite_40 @cite_2 @cite_5 @cite_20
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In a document network such as a citation network of scientific documents, web-logs, etc., the content produced by authors exhibits their interest in certain topics. In addition some authors influence other authors' interests. In this work, we propose to model the influence of cited authors along with the interests of citing authors. Moreover, we hypothesize that apart from the citations present in documents, the context surrounding the citation mention provides extra topical information about the cited authors. However, associating terms in the context to the cited authors remains an open problem. We propose novel document generation schemes that incorporate the context while simultaneously modeling the interests of citing authors and influence of the cited authors. Our experiments show significant improvements over baseline models for various evaluation criteria such as link prediction between document and cited author, and quantitatively explaining unseen text. Citation relationship between scientific publications has been successfully used for scholarly bibliometrics, information retrieval and data mining tasks, and citation-based recommendation algorithms are well documented. While previous studies investigated citation relations from various viewpoints, most of them share the same assumption that, if paper1 cites paper2 (or author1 cites author2), they are connected, regardless of citation importance, sentiment, reason, topic, or motivation. However, this assumption is oversimplified. In this study, we employ an innovative "context-rich heterogeneous network" approach, which paves a new way for citation recommendation task. In the network, we characterize 1) the importance of citation relationships between citing and cited papers, and 2) the topical citation motivation. Unlike earlier studies, the citation information, in this paper, is characterized by citation textual contexts extracted from the full-text citing paper. We also propose algorithm to cope with the situation when large portion of full-text missing information exists in the bibliographic repository. Evaluation results show that, context-rich heterogeneous network can significantly enhance the citation recommendation performance. In this work, we address the problem of joint modeling of text and citations in the topic modeling framework. We present two different models called the Pairwise-Link-LDA and the Link-PLSA-LDA models. The Pairwise-Link-LDA model combines the ideas of LDA [4] and Mixed Membership Block Stochastic Models [1] and allows modeling arbitrary link structure. However, the model is computationally expensive, since it involves modeling the presence or absence of a citation (link) between every pair of documents. The second model solves this problem by assuming that the link structure is a bipartite graph. As the name indicates, Link-PLSA-LDA model combines the LDA and PLSA models into a single graphical model. Our experiments on a subset of Citeseer data show that both these models are able to predict unseen data better than the baseline model of Erosheva and Lafferty [8], by capturing the notion of topical similarity between the contents of the cited and citing documents. Our experiments on two different data sets on the link prediction task show that the Link-PLSA-LDA model performs the best on the citation prediction task, while also remaining highly scalable. In addition, we also present some interesting visualizations generated by each of the models. Search algorithms incorporating some form of topic model have a long history in information retrieval. For example, cluster-based retrieval has been studied since the 60s and has recently produced good results in the language model framework. An approach to building topic models based on a formal generative model of documents, Latent Dirichlet Allocation (LDA), is heavily cited in the machine learning literature, but its feasibility and effectiveness in information retrieval is mostly unknown. In this paper, we study how to efficiently use LDA to improve ad-hoc retrieval. We propose an LDA-based document model within the language modeling framework, and evaluate it on several TREC collections. Gibbs sampling is employed to conduct approximate inference in LDA and the computational complexity is analyzed. We show that improvements over retrieval using cluster-based models can be obtained with reasonable efficiency. Abstract Documents in computer-readable form can be used to provide information about other documents, i.e. those they cite. To do this efficiently requires procedures for computer recognition of citing statements. This is not easy, especially for multi-sentence citing statements. Computer recognition procedures have been developed which are accurate to the following extent: 73 of the words in statements selected by computer procedures as being citing statements are words which are correctly attributable to the corresponding documents. The retrieval effectiveness of computer-recognized citing statements was tested in the following way. First, for eight retrieval requests in inorganiic chemistry, average recall by search of Chemical Abstracts Service indexing and Chemical Abstracts abstract text words was found to be 50 . Words from citing statements referring to the papers to be retrieved were then added to the index terms and abstract words as additional access points, and searching was repeated. Average recall increased to 70 . Only words from citing statements published within a year of the cited papers were used. The retrieval effect of citing statement words alone (published within a year) without index or abstract terms was the following: average recall was 40 . When just the words of the titles of the cited papers were added to those citing statement words, average recall increased to 50 . A citing sentence is one that appears in a scientific article and cites previous work. Citing sentences have been studied and used in many applications. For example, they have been used in scientific paper summarization, automatic survey generation, paraphrase identification, and citation function classification. Citing sentences that cite multiple papers are common in scientific writing. This observation should be taken into consideration when using citing sentences in applications. For instance, when a citing sentence is used in a summary of a scientific paper, only the fragments of the sentence that are relevant to the summarized paper should be included in the summary. In this paper, we present and compare three different approaches for identifying the fragments of a citing sentence that are related to a given target reference. Our methods are: word classification, sequence labeling, and segment classification. Our experiments show that segment classification achieves the best results. Mapping of science and technology can be done at different levels of aggregation, using a variety of methods. In this paper, we propose a method in which title words are used as indicators for the content of a research topic, and cited references are used as the context in which words get their meaning. Research topics are represented by sets of papers that are similar in terms of these word-reference combinations. In this way we use words without neglecting differences and changes in their meanings. The method has several advantages, such as high coverage of publications. As an illustration we apply the method to produce knowledge maps of information science. Scholars are increasingly citing electronic “web references” which are not preserved in libraries or full text archives. WebCite is a new standard for citing web references. To “webcite” a document involves archiving the cited Web page through www.webcitation.org and citing the WebCite permalink instead of (or in addition to) the unstable live Web page. This journal has amended its “instructions for authors” accordingly, asking authors to archive cited Web pages before submitting a manuscript. Almost 200 other journals are already using the system. We discuss the rationale for WebCite, its technology, and how scholars, editors, and publishers can benefit from the service. Citing scholars initiate an archiving process of all cited Web references, ideally before they submit a manuscript. Authors of online documents and websites which are expected to be cited by others can ensure that their work is permanently available by creating an archived copy using WebCite and providing the citation information including the WebCite link on their Web document(s). Editors should ask their authors to cache all cited Web addresses (Uniform Resource Locators, or URLs) “prospectively” before submitting their manuscripts to their journal. Editors and publishers should also instruct their copyeditors to cache cited Web material if the author has not done so already. Finally, WebCite can process publisher submitted “citing articles” (submitted for example as eXtensible Markup Language [XML] documents) to automatically archive all cited Web pages shortly before or on publication. Finally, WebCite can act as a focussed crawler, caching retrospectively references of already published articles. Copyright issues are addressed by honouring respective Internet standards (robot exclusion files, no-cache and no-archive tags). Long-term preservation is ensured by agreements with libraries and digital preservation organizations. The resulting WebCite Index may also have applications for research assessment exercises, being able to measure the impact of Web services and published Web documents through access and Web citation metrics. @PARASPLIT [J Med Internet Res 2005;7(5):e60] Allan Bloom's cytologic epistemology invites further analysis. A scientific article is like a cell that interacts with its neighbors to form an organ-like cluster—a set of articles or a "literature" addressed to a common set of problems and topics. These articles interact by citing one another—by conversing in print. The clusters themselves can be seen as interacting, to varying degrees, with other clusters. This essay will focus on certain failures of intercluster communication. A new form of document coupling called co-citation is defined as the frequency with which two documents are cited together. The co-citation frequency of two scientific papers can be determined by comparing lists of citing documents in the Science Citation Index and counting identical entries. Networks of co-cited papers can be generated for specific scientific specialties, and an example is drawn from the literature of particle physics. Co-citation patterns are found to differ significantly from bibliographic coupling patterns, but to agree generally with patterns of direct citation. Clusters of co-cited papers provide a new way to study the specialty structure of science. They may provide a new approach to indexing and to the creation of SDI profiles. Patent prior art search is a type of search in the patent domain where documents are searched for that describe the work previously carried out related to a patent application. The goal of this search is to check whether the idea in the patent application is novel. Vocabulary mismatch is one of the main problems of patent retrieval which results in low retrievability of similar documents for a given patent application. In this paper we show how the term distribution of the cited documents in an initially retrieved ranked list can be used to address the vocabulary mismatch. We propose a method for query modeling estimation which utilizes the citation links in a pseudo relevance feedback set. We first build a topic dependent citation graph, starting from the initially retrieved set of feedback documents and utilizing citation links of feedback documents to expand the set. We identify the important documents in the topic dependent citation graph using a citation analysis measure. We then use the term distribution of the documents in the citation graph to estimate a query model by identifying the distinguishing terms and their respective weights. We then use these terms to expand our original query. We use CLEF-IP 2011 collection to evaluate the effectiveness of our query modeling approach for prior art search. We also study the influence of different parameters on the performance of the proposed method. The experimental results demonstrate that the proposed approach significantly improves the recall over a state-of-the-art baseline which uses the link-based structure of the citation graph but not the term distribution of the cited documents. Purpose – The purpose of this paper is to suggest an alternative to the widely used Times Cited criterion for analysing citation networks. The approach involves taking account of the natures of the papers that cite a given paper, so as to differentiate between papers that attract the same number of citations.Design methodology approach – ArticleRank is an algorithm that has been derived from Google's PageRank algorithm to measure the influence of journal articles. ArticleRank is applied to two datasets – a citation network based on an early paper on webometrics, and a self‐citation network based on the 19 most cited papers in the Journal of Documentation – using citation data taken from the Web of Knowledge database.Findings – ArticleRank values provide a different ranking of a set of papers from that provided by the corresponding Times Cited values, and overcomes the inability of the latter to differentiate between papers with the same numbers of citations. The difference in rankings between Times Cited ... Historically, papers have been physically bound to the journal in which they were published; but in the digital age papers are available individually, no longer tied to their respective journals. Hence, papers now can be read and cited based on their own merits, independently of the journal's physical availability, reputation, or impact factor (IF). We compare the strength of the relationship between journals' IFs and the actual citations received by their respective papers from 1902 to 2009. Throughout most of the 20th century, papers' citation rates were increasingly linked to their respective journals' IFs. However, since 1990, the advent of the digital age, the relation between IFs and paper citations has been weakening. This began first in physics, a field that was quick to make the transition into the electronic domain. Furthermore, since 1990 the overall proportion of highly cited papers coming from highly cited journals has been decreasing and, of these highly cited papers, the proportion not coming from highly cited journals has been increasing. Should this pattern continue, it might bring an end to the use of the IF as a way to evaluate the quality of journals, papers, and researchers. © 2012 Wiley Periodicals, Inc. The article introduces digital image restoration to the reader who is just beginning in this field, and provides a review and analysis for the reader who may already be well-versed in image restoration. The perspective on the topic is one that comes primarily from work done in the field of signal processing. Thus, many of the techniques and works cited relate to classical signal processing approaches to estimation theory, filtering, and numerical analysis. In particular, the emphasis is placed primarily on digital image restoration algorithms that grow out of an area known as "regularized least squares" methods. It should be noted, however, that digital image restoration is a very broad field, as we discuss, and thus contains many other successful approaches that have been developed from different perspectives, such as optics, astronomy, and medical imaging, just to name a few. In the process of reviewing this topic, we address a number of very important issues in this field that are not typically discussed in the technical literature. We present insights from a bibliometric analysis and scientific paper publication mining of 551 papers in Requirements Engineering (RE) series of conference (11 years from 2005 to 2015). We study cross-disciplinary and interdisciplinary nature of RE re- search by analyzing the cited disciplines in the reference section of each paper. We apply topic modeling on a corpus consisting of 551 abstracts and extract topics as frequently co-occurring and connected terms. We use topic modeling to study the structure and composition of RE research and analyze popular topics in industry as well as research track. Co-authorship in papers is an indicator of collaboration and interaction between scientists as well as institutions and we analyze co-authorship data to in- vestigate university-industry collaboration, internal and external collaborations. We present results on the distribution of the num- ber of co-authors in each paper as well as distribution of authors across world regions. We present our analysis on the public or proprietary dataset as well as the domain of the dataset used in studies published in Requirements Engineering (RE) series of conferences. In recent years scholars have built maps of science by connecting the academic fields that cite each other, are cited together, or that cite a similar literature. But since scholars cannot always publish in the fields they cite, or that cite them, these science maps are only rough proxies for the potential of a scholar, organization, or country, to enter a new academic field. Here we use a large dataset of scholarly publications disambiguated at the individual level to create a map of science-or research space-where links connect pairs of fields based on the probability that an individual has published in both of them. We find that the research space is a significantly more accurate predictor of the fields that individuals and organizations will enter in the future than citation based science maps. At the country level, however, the research space and citations based science maps are equally accurate. These findings show that data on career trajectories-the set of fields that individuals have previously published in-provide more accurate predictors of future research output for more focalized units-such as individuals or organizations-than citation based science maps. The problem of topic modeling can be seen as a generalization of the clustering problem, in that it posits that observations are generated due to multiple latent factors (e.g., the words in each document are generated as a mixture of several active topics, as opposed to just one). This increased representational power comes at the cost of a more challenging unsupervised learning problem of estimating the topic probability vectors (the distributions over words for each topic), when only the words are observed and the corresponding topics are hidden. We provide a simple and efficient learning procedure that is guaranteed to recover the parameters for a wide class of mixture models, including the popular latent Dirichlet allocation (LDA) model. For LDA, the procedure correctly recovers both the topic probability vectors and the prior over the topics, using only trigram statistics (i.e., third order moments, which may be estimated with documents containing just three words). The method, termed Excess Correlation Analysis (ECA), is based on a spectral decomposition of low order moments (third and fourth order) via two singular value decompositions (SVDs). Moreover, the algorithm is scalable since the SVD operations are carried out on @math matrices, where @math is the number of latent factors (e.g. the number of topics), rather than in the @math -dimensional observed space (typically @math ). Citations are important in academic dissemination. To help researchers check the completeness of citations while authoring a paper, we introduce a citation recommendation system called RefSeer. Researchers can use it to find related works to cited while authoring papers. It can also be used by reviewers to check the completeness of a paper's references. RefSeer presents both topic based global recommendation and also citation-context based local recommendation. By evaluating the quality of recommendation, we show that such recommendation system can recommend citations with good precision and recall. We also show that our recommendation system is very efficient and scalable. On the occasion of the 10th anniversary of the MSR conference, it is a worthwhile exercise to meditate on the past, present and future of our research discipline. Indeed, since the MSR community has experienced a big influx of researchers bringing in new ideas, state-of-the art technology and contemporary research methods it is unclear what the future might bring. In this paper, we report on a text mining exercise applied on the complete corpus of MSR papers to reflect on where we come from; where we are now; and where we should be going. We address issues like the trendy (and outdated) research topics; the frequently (and less frequently) cited cases; the popular (and emerging) mining infrastructure; and finally the proclaimed actionable information which we are deemed to uncover. Algorithms such as Latent Dirichlet Allocation (LDA) have achieved significant progress in modeling word document relationships. These algorithms assume each word in the document was generated by a hidden topic and explicitly model the word distribution of each topic as well as the prior distribution over topics in the document. Given these parameters, the topics of all words in the same document are assumed to be independent. In this paper, we propose modeling the topics of words in the document as a Markov chain. Specifically, we assume that all words in the same sentence have the same topic, and successive sentences are more likely to have the same topics. Since the topics are hidden, this leads to using the well-known tools of Hidden Markov Models for learning and inference. We show that incorporating this dependency allows us to learn better topics and to disambiguate words that can belong to different topics. Quantitatively, we show that we obtain better perplexity in modeling documents with only a modest increase in learning and inference complexity.