We present a novel method to explicitly incorporate topological prior knowledge into deep learning based segmentation, which is, to our knowledge, the first work to do so. Our method uses the concept of persistent homology, a tool from topological data analysis, to capture high-level topological characteristics of segmentation results in a way which is differentiable with respect to the pixelwise probability of being assigned to a given class. The topological prior knowledge consists of the sequence of desired Betti numbers of the segmentation. As a proof-of-concept we demonstrate our approach by applying it to the problem of left-ventricle segmentation of cardiac MR images of 500 subjects from the UK Biobank dataset, where we show that it improves segmentation performance in terms of topological correctness without sacrificing pixelwise accuracy.
The recent work of @cite_2 introduced a topological regulariser for classification problems by considering the stability of connected components of the classification boundary and can be extended to higher-order topological features. It also provided a differentiable loss function which can be incorporated in the training of a neural network. This approach differs from ours in that firstly, it imposes topological constraints on the shape of the classification boundary in the feature space of inputs to the network, rather than topological constraints in the space of the pixels in the image, and secondly it aims only to reduce overall topological complexity. Our approach aims to fit the desired absence or presence of certain features and so complex features can be penalised or rewarded, as is appropriate for the task at hand.
@cite_2
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Regularization plays a crucial role in supervised learning. A successfully regularized model strikes a balance between a perfect description of the training data and the ability to generalize to unseen data. Most existing methods enforce a global regularization in a structure agnostic manner. In this paper, we initiate a new direction and propose to enforce the structural simplicity of the classification boundary by regularizing over its topological complexity. In particular, our measurement of topological complexity incorporates the importance of topological features (e.g., connected components, handles, and so on) in a meaningful manner, and provides a direct control over spurious topological structures. We incorporate the new measurement as a topological loss in training classifiers. We also propose an efficient algorithm to compute the gradient. Our method provides a novel way to topologically simplify the global structure of the model, without having to sacrifice too much of the flexibility of the model. We demonstrate the effectiveness of our new topological regularizer on a range of synthetic and real-world datasets. The recent success of deep learning techniques in classification and object detection tasks has been leveraged for segmentation tasks. However, a weakness of these deep segmentation models is their limited ability to encode high level shape priors, such as smoothness and preservation of complex interactions between object regions, which can result in implausible segmentations. In this work, by formulating and optimizing a new loss, we introduce the first deep network trained to encode geometric and topological priors of containment and detachment. Our results on the segmentation of histology glands from a dataset of 165 images demonstrate the advantage of our novel loss terms and show how our topology aware architecture outperforms competing methods by up to 10 in both pixel-level accuracy and object-level Dice. This paper introduces a methodology for neural network global optimization. The aim is the simultaneous optimization of multilayer perceptron (MLP) network weights and architectures, in order to generate topologies with few connections and high classification performance for any data sets. The approach combines the advantages of simulated annealing, tabu search and the backpropagation training algorithm in order to generate an automatic process for producing networks with high classification performance and low complexity. Experimental results obtained with four classification problems and one prediction problem has shown to be better than those obtained by the most commonly used optimization techniques Complex networks have been employed to model many real systems and as a modeling tool in a myriad of applications. In this paper, we use the framework of complex networks to the problem of supervised classification in the word disambiguation task, which consists in deriving a function from the supervised (or labeled) training data of ambiguous words. Traditional supervised data classification takes into account only topological or physical features of the input data. On the other hand, the human (animal) brain performs both low- and high-level orders of learning and it has facility to identify patterns according to the semantic meaning of the input data. In this paper, we apply a hybrid technique which encompasses both types of learning in the field of word sense disambiguation and show that the high-level order of learning can really improve the accuracy rate of the model. This evidence serves to demonstrate that the internal structures formed by the words do present patterns that, generally, cannot be correctly unveiled by only traditional techniques. Finally, we exhibit the behavior of the model for different weights of the low- and high-level classifiers by plotting decision boundaries. This study helps one to better understand the effectiveness of the model. This paper tackles the task of estimating the topology of filamentary networks such as retinal vessels and road networks. Building on top of a global model that performs a dense semantical classification of the pixels of the image, we design a Convolutional Neural Network (CNN) that predicts the local connectivity between the central pixel of an input patch and its border points. By iterating this local connectivity we sweep the whole image and infer the global topology of the filamentary network, inspired by a human delineating a complex network with the tip of their finger. We perform an extensive and comprehensive qualitative and quantitative evaluation on two tasks: retinal veins and arteries topology extraction and road network estimation. In both cases, represented by two publicly available datasets (DRIVE and Massachusetts Roads), we show superior performance to very strong baselines. Topological data analysis offers a rich source of valuable information to study vision problems. Yet, so far we lack a theoretically sound connection to popular kernel-based learning techniques, such as kernel SVMs or kernel PCA. In this work, we establish such a connection by designing a multi-scale kernel for persistence diagrams, a stable summary representation of topological features in data. We show that this kernel is positive definite and prove its stability with respect to the 1-Wasserstein distance. Experiments on two benchmark datasets for 3D shape classification retrieval and texture recognition show considerable performance gains of the proposed method compared to an alternative approach that is based on the recently introduced persistence landscapes. In this paper, we combine network coding and tomographic techniques for topology inference. Our goal is to infer the topology of a network by sending probes between a given set of multiple sources and multiple receivers and by having intermediate nodes perform network coding operations. We combine and extend two ideas that have been developed independently. On one hand, network coding introduces topology-dependent correlation, which can then be exploited at the receivers to infer the topology [1]. On the other hand, it has been shown that a traditional (i.e., without network coding) multiple source, multiple receiver tomography problem can be decomposed into multiple two source, two receiver subproblems [2]. Our first contribution is to show that, when intermediate nodes perform network coding, topological information contained in network coded packets allows to accurately distinguish among all different 2-by-2 subnetwork components, which was not possible with traditional tomographic techniques. Our second contribution is to use this knowledge to merge the subnetworks and accurately reconstruct the general topology. Our approach is applicable to any general Internet-like topology, and is robust to the presence of delay variability and packet loss. We introduce a new function-preserving transformation for efficient neural architecture search. This network transformation allows reusing previously trained networks and existing successful architectures that improves sample efficiency. We aim to address the limitation of current network transformation operations that can only perform layer-level architecture modifications, such as adding (pruning) filters or inserting (removing) a layer, which fails to change the topology of connection paths. Our proposed path-level transformation operations enable the meta-controller to modify the path topology of the given network while keeping the merits of reusing weights, and thus allow efficiently designing effective structures with complex path topologies like Inception models. We further propose a bidirectional tree-structured reinforcement learning meta-controller to explore a simple yet highly expressive tree-structured architecture space that can be viewed as a generalization of multi-branch architectures. We experimented on the image classification datasets with limited computational resources (about 200 GPU-hours), where we observed improved parameter efficiency and better test results (97.70 test accuracy on CIFAR-10 with 14.3M parameters and 74.6 top-1 accuracy on ImageNet in the mobile setting), demonstrating the effectiveness and transferability of our designed architectures. We present a formulation of deep learning that aims at producing a large margin classifier. The notion of margin, minimum distance to a decision boundary, has served as the foundation of several theoretically profound and empirically successful results for both classification and regression tasks. However, most large margin algorithms are applicable only to shallow models with a preset feature representation; and conventional margin methods for neural networks only enforce margin at the output layer. Such methods are therefore not well suited for deep networks. In this work, we propose a novel loss function to impose a margin on any chosen set of layers of a deep network (including input and hidden layers). Our formulation allows choosing any norm on the metric measuring the margin. We demonstrate that the decision boundary obtained by our loss has nice properties compared to standard classification loss functions. Specifically, we show improved empirical results on the MNIST, CIFAR-10 and ImageNet datasets on multiple tasks: generalization from small training sets, corrupted labels, and robustness against adversarial perturbations. The resulting loss is general and complementary to existing data augmentation (such as random adversarial input transform) and regularization techniques (such as weight decay, dropout, and batch norm). The design space for large, multipath datacenter networks is large and complex, and no one design fits all purposes. Network architects must trade off many criteria to design cost-effective, reliable, and maintainable networks, and typically cannot explore much of the design space. We present Condor, our approach to enabling a rapid, efficient design cycle. Condor allows architects to express their requirements as constraints via a Topology Description Language (TDL), rather than having to directly specify network structures. Condor then uses constraint-based synthesis to rapidly generate candidate topologies, which can be analyzed against multiple criteria. We show that TDL supports concise descriptions of topologies such as fat-trees, BCube, and DCell; that we can generate known and novel variants of fat-trees with simple changes to a TDL file; and that we can synthesize large topologies in tens of seconds. We also show that Condor supports the daunting task of designing multi-phase network expansions that can be carried out on live networks. In their seminal work on homological sensor networks, de Silva and Ghrist showed the surprising fact that it's possible to certify the coverage of a coordinate-free sensor network even with very minimal knowledge of the space to be covered. Here, coverage means that every point in the domain (except possibly those very near the boundary) has a nearby sensor. More generally, their algorithm takes a pair of nested neighborhood graphs along with a labeling of vertices as either boundary or interior and computes the relative homology of a simplicial complex induced by the graphs. This approach, called the Topological Coverage Criterion (TCC), requires some assumptions about the underlying geometric domain as well as some assumptions about the relationship of the input graphs to the domain. The goal of this paper is to generalize these assumptions and show how the TCC can be applied to both much more general domains as well as very weak assumptions on the input. We give a new, simpler proof of the de Silva-Ghrist Topological Coverage Criterion that eliminates any assumptions about the smoothness of the boundary of the underlying space, allowing the results to be applied to much more general problems. The new proof factors the geometric, topological, and combinatorial aspects, allowing us to provide a coverage condition that supports thick boundaries, k-coverage, and weighted coverage, in which sensors have varying radii. Delineation of curvilinear structures is an important problem in Computer Vision with multiple practical applications. With the advent of Deep Learning, many current approaches on automatic delineation have focused on finding more powerful deep architectures, but have continued using the habitual pixel-wise losses such as binary cross-entropy. In this paper we claim that pixel-wise losses alone are unsuitable for this problem because of their inability to reflect the topological impact of mistakes in the final prediction. We propose a new loss term that is aware of the higher-order topological features of linear structures. We also introduce a refinement pipeline that iteratively applies the same model over the previous delineation to refine the predictions at each step while keeping the number of parameters and the complexity of the model constant. When combined with the standard pixel-wise loss, both our new loss term and our iterative refinement boost the quality of the predicted delineations, in some cases almost doubling the accuracy as compared to the same classifier trained with the binary cross-entropy alone. We show that our approach outperforms state-of-the-art methods on a wide range of data, from microscopy to aerial images. Topological tools provide features about spaces, which are insensitive to continuous deformations. Applied to images, the topological analysis reveals important characteristics: how many connected components are present, which ones have holes and how many, how are they related one to another, how to measure them and find their locations. We show in this paper that the extraction of such features by computing persistent homology is suitable for grayscale image segmentation. This paper deals with the modeling of n-dimensional objects, more precisely with the modeling of subdivisions of n-dimensional topological spaces. We here study the notions of: n-dimensional generalized map (or n-G-map), for the modeling of the topology of any subdivision of any n-dimensional topological space (orientable or not orientable, with or without boundaries); n-dimensional map (or n-map), for the modeling of the topology of any subdivision of any orientable n-dimensional topological space, without boundaries. These two notions extend the notion of topological map, which has been used for the modeling of the topology of any subdivision of any surface. We study in this paper some properties of the n-G-maps and the n-maps (orientability, duality, relationships between n-G-maps and n-maps …), and we define also operations for constructing any n-G-map. Recently, researchers in the artificial neural net- work field have focused their attention on connectionist models composed by several hidden layers. In fact, experimental results and heuristic considerations suggest that deep architectures are more suitable than shallow ones for modern applications, facing very complex problems, e.g., vision and human language understanding. However, the actual theoretical results supporting such a claim are still few and incomplete. In this paper, we propose a new approach to study how the depth of feedforward neural networks impacts on their ability in implementing high complexity functions. First, a new measure based on topological concepts is introduced, aimed at evaluating the complexity of the function implemented by a neural network, used for classification purposes. Then, deep and shallow neural architectures with com- mon sigmoidal activation functions are compared, by deriving upper and lower bounds on their complexity, and studying how the complexity depends on the number of hidden units and the used activation function. The obtained results seem to support the idea that deep networks actually implements functions of higher complexity, so that they are able, with the same number of resources, to address more difficult problems. Conventional change detection methods require a large number of images to learn background models or depend on tedious pixel-level labeling by humans. In this paper, we present a weakly supervised approach that needs only image-level labels to simultaneously detect and localize changes in a pair of images. To this end, we employ a deep neural network with DAG topology to learn patterns of change from image-level labeled training data. On top of the initial CNN activations, we define a CRF model to incorporate the local differences and context with the dense connections between individual pixels. We apply a constrained mean-field algorithm to estimate the pixel-level labels, and use the estimated labels to update the parameters of the CNN in an iterative EM framework. This enables imposing global constraints on the observed foreground probability mass function. Our evaluations on four benchmark datasets demonstrate superior detection and localization performance. Current peer-to-peer (P2P) systems often suffer from a large fraction of freeriders not contributing any resources to the network. Various mechanisms have been designed to overcome this problem. However, the selfish behavior of peers has aspects which go beyond resource sharing. This paper studies the effects on the topology of a P2P network if peers selfishly select the peers to connect to. In our model, a peer exploits locality properties in order to minimize the latency (or response times) of its lookup operations. At the same time, the peer aims at not having to maintain links to too many other peers in the system. By giving tight bounds on the price of anarchy, we show that the resulting topologies can be much worse than if peers collaborated. Moreover, the network may never stabilize, even in the absence of churn. Finally, we establish the complexity of Nash equilibria in our game theoretic model of P2P networks. Specifically, we prove that it is NP-hard to decide whether our game has a Nash equilibrium and can stabilize. We present a method for transferring neural representations from label-rich source domains to unlabeled target domains. Recent adversarial methods proposed for this task learn to align features across domains by fooling a special domain critic network. However, a drawback of this approach is that the critic simply labels the generated features as in-domain or not, without considering the boundaries between classes. This can lead to ambiguous features being generated near class boundaries, reducing target classification accuracy. We propose a novel approach, Adversarial Dropout Regularization (ADR), to encourage the generator to output more discriminative features for the target domain. Our key idea is to replace the critic with one that detects non-discriminative features, using dropout on the classifier network. The generator then learns to avoid these areas of the feature space and thus creates better features. We apply our ADR approach to the problem of unsupervised domain adaptation for image classification and semantic segmentation tasks, and demonstrate significant improvement over the state of the art. We also show that our approach can be used to train Generative Adversarial Networks for semi-supervised learning. In this paper we present a deep neural network topology that incorporates a simple to implement transformationinvariant pooling operator (TI-POOLING). This operator is able to efficiently handle prior knowledge on nuisance variations in the data, such as rotation or scale changes. Most current methods usually make use of dataset augmentation to address this issue, but this requires larger number of model parameters and more training data, and results in significantly increased training time and larger chance of under-or overfitting. The main reason for these drawbacks is that that the learned model needs to capture adequate features for all the possible transformations of the input. On the other hand, we formulate features in convolutional neural networks to be transformation-invariant. We achieve that using parallel siamese architectures for the considered transformation set and applying the TI-POOLING operator on their outputs before the fully-connected layers. We show that this topology internally finds the most optimal "canonical" instance of the input image for training and therefore limits the redundancy in learned features. This more efficient use of training data results in better performance on popular benchmark datasets with smaller number of parameters when comparing to standard convolutional neural networks with dataset augmentation and to other baselines. This paper tackles the problem of computing topological invariants of geometric objects in a robust manner, using only point cloud data sampled from the object. It is now widely recognised that this kind of topological analysis can give qualitative information about data sets which is not readily available by other means. In particular, it can be an aid to visualisation of high dimensional data. Standard simplicial complexes for approximating the topological type of the underlying space (such as Cech, Rips, or a-shape) produce simplicial complexes whose vertex set has the same size as the underlying set of point cloud data. Such constructions are sometimes still tractable, but are wasteful (of computing resources) since the homotopy types of the underlying objects are generally realisable on much smaller vertex sets. We obtain smaller complexes by choosing a set of 'landmark' points from our data set, and then constructing a "witness complex" on this set using ideas motivated by the usual Delaunay complex in Euclidean space. The key idea is that the remaining (non-landmark) data points are used as witnesses to the existence of edges or simplices spanned by combinations of landmark points. Our construction generalises the topology-preserving graphs of Martinetz and Schulten [MS94] in two directions. First, it produces a simplicial complex rather than a graph. Secondly it actually produces a nested family of simplicial complexes, which represent the data at different feature scales, suitable for calculating persistent homology [ELZ00, ZC04]. We find that in addition to the complexes being smaller, they also provide (in a precise sense) a better picture of the homology, with less noise, than the full scale constructions using all the data points. We illustrate the use of these complexes in qualitatively analyzing a data set of 3 × 3 pixel patches studied by David [LPM03].