Compressed sensing is designed to measure sparse signals directly in a compressed form. However, most signals of interest are only “approximately sparse”, i.e. even though the signal contains only a small fraction of relevant (large) components the other components are not strictly equal to zero, but are only close to zero. In this paper we model the approximately sparse signal with a Gaussian distribution of small components, and we study its compressed sensing with dense random matrices. We use replica calculations to determine the mean-squared error of the Bayes-optimal reconstruction for such signals, as a function of the variance of the small components, the density of large components and the measurement rate. We then use the G-AMP algorithm and we quantify the region of parameters for which this algorithm achieves optimality (for large systems). Finally, we show that in the region where the G-AMP algorithm for the homogeneous measurement matrices is not optimal, a special “seeding” design of a spatially-coupled measurement matrix allows to restore optimality.
As we shall see the G-AMP algorithm for homogeneous measurement matrices matches asymptotically the performance of the optimal reconstruction in a large part of the parameter space. In some region of parameters, however, it is suboptimal. For the sparse signals, it was demonstrated heuristically in @cite_13 that optimality can be restored using seeding matrices (the concept is called spatial coupling), rigorous proof of this was worked out in @cite_7 . The robustness to measurement noise was also discussed in @cite_7 @cite_20 . Note that the concept of spatial coupling'' thanks to which theoretical thresholds can be saturated was developed in error-correcting codes @cite_22 @cite_17 @cite_18 . In compressed sensing the spatial coupling'' was first tested in @cite_12 who did not observe any improvement for the two-Gaussian model for reasons that we will clarify later in this paper. Basically, the spatial coupling provides improvements only if a first order phase transition is present, but for the variance of small components that was tested in @cite_12 there is no such transition: it appears only for slightly smaller values of the variance.
@cite_18 @cite_22 @cite_7 @cite_13 @cite_12 @cite_20 @cite_17
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A new form of document coupling called co-citation is defined as the frequency with which two documents are cited together. The co-citation frequency of two scientific papers can be determined by comparing lists of citing documents in the Science Citation Index and counting identical entries. Networks of co-cited papers can be generated for specific scientific specialties, and an example is drawn from the literature of particle physics. Co-citation patterns are found to differ significantly from bibliographic coupling patterns, but to agree generally with patterns of direct citation. Clusters of co-cited papers provide a new way to study the specialty structure of science. They may provide a new approach to indexing and to the creation of SDI profiles. Abstract Documents in computer-readable form can be used to provide information about other documents, i.e. those they cite. To do this efficiently requires procedures for computer recognition of citing statements. This is not easy, especially for multi-sentence citing statements. Computer recognition procedures have been developed which are accurate to the following extent: 73 of the words in statements selected by computer procedures as being citing statements are words which are correctly attributable to the corresponding documents. The retrieval effectiveness of computer-recognized citing statements was tested in the following way. First, for eight retrieval requests in inorganiic chemistry, average recall by search of Chemical Abstracts Service indexing and Chemical Abstracts abstract text words was found to be 50 . Words from citing statements referring to the papers to be retrieved were then added to the index terms and abstract words as additional access points, and searching was repeated. Average recall increased to 70 . Only words from citing statements published within a year of the cited papers were used. The retrieval effect of citing statement words alone (published within a year) without index or abstract terms was the following: average recall was 40 . When just the words of the titles of the cited papers were added to those citing statement words, average recall increased to 50 . A citing sentence is one that appears in a scientific article and cites previous work. Citing sentences have been studied and used in many applications. For example, they have been used in scientific paper summarization, automatic survey generation, paraphrase identification, and citation function classification. Citing sentences that cite multiple papers are common in scientific writing. This observation should be taken into consideration when using citing sentences in applications. For instance, when a citing sentence is used in a summary of a scientific paper, only the fragments of the sentence that are relevant to the summarized paper should be included in the summary. In this paper, we present and compare three different approaches for identifying the fragments of a citing sentence that are related to a given target reference. Our methods are: word classification, sequence labeling, and segment classification. Our experiments show that segment classification achieves the best results. Scholars are increasingly citing electronic “web references” which are not preserved in libraries or full text archives. WebCite is a new standard for citing web references. To “webcite” a document involves archiving the cited Web page through www.webcitation.org and citing the WebCite permalink instead of (or in addition to) the unstable live Web page. This journal has amended its “instructions for authors” accordingly, asking authors to archive cited Web pages before submitting a manuscript. Almost 200 other journals are already using the system. We discuss the rationale for WebCite, its technology, and how scholars, editors, and publishers can benefit from the service. Citing scholars initiate an archiving process of all cited Web references, ideally before they submit a manuscript. Authors of online documents and websites which are expected to be cited by others can ensure that their work is permanently available by creating an archived copy using WebCite and providing the citation information including the WebCite link on their Web document(s). Editors should ask their authors to cache all cited Web addresses (Uniform Resource Locators, or URLs) “prospectively” before submitting their manuscripts to their journal. Editors and publishers should also instruct their copyeditors to cache cited Web material if the author has not done so already. Finally, WebCite can process publisher submitted “citing articles” (submitted for example as eXtensible Markup Language [XML] documents) to automatically archive all cited Web pages shortly before or on publication. Finally, WebCite can act as a focussed crawler, caching retrospectively references of already published articles. Copyright issues are addressed by honouring respective Internet standards (robot exclusion files, no-cache and no-archive tags). Long-term preservation is ensured by agreements with libraries and digital preservation organizations. The resulting WebCite Index may also have applications for research assessment exercises, being able to measure the impact of Web services and published Web documents through access and Web citation metrics. @PARASPLIT [J Med Internet Res 2005;7(5):e60] Recently, it was observed that spatially-coupled LDPC code ensembles approach the Shannon capacity for a class of binary-input memoryless symmetric (BMS) channels. The fundamental reason for this was attributed to a "threshold saturation" phenomena derived by Kudekar, Richardson and Urbanke. In particular, it was shown that the belief propagation (BP) threshold of the spatially coupled codes is equal to the maximum a posteriori (MAP) decoding threshold of the underlying constituent codes. In this sense, the BP threshold is saturated to its maximum value. Moreover, it has been empirically observed that the same phenomena also occurs when transmitting over more general classes of BMS channels. In this paper, we show that the effect of spatial coupling is not restricted to the realm of channel coding. The effect of coupling also manifests itself in compressed sensing. Specifically, we show that spatially-coupled measurement matrices have an improved sparsity to sampling threshold for reconstruction algorithms based on verification decoding. For BP-based reconstruction algorithms, this phenomenon is also tested empirically via simulation. At the block lengths accessible via simulation, the effect is quite small and it seems that spatial coupling is not providing the gains one might expect. Based on the threshold analysis, however, we believe this warrants further study. Abstract It is now well-known that one can reconstruct sparse or compressible signals accurately from a very limited number of measurements, possibly contaminated with noise. This technique known as “compressed sensing” or “compressive sampling” relies on properties of the sensing matrix such as the restricted isometry property . In this Note, we establish new results about the accuracy of the reconstruction from undersampled measurements which improve on earlier estimates, and have the advantage of being more elegant. To cite this article: E.J. Candes, C. R. Acad. Sci. Paris, Ser. I 346 (2008). Recently, it was observed that spatially-coupled LDPC code ensembles approach the Shannon capacity for a class of binary-input memoryless symmetric (BMS) channels. The fundamental reason for this was attributed to a threshold saturation phenomena derived in [1]. In particular, it was shown that the belief propagation (BP) threshold of the spatially coupled codes is equal to the maximum a posteriori (MAP) decoding threshold of the underlying constituent codes. In this sense, the BP threshold is saturated to its maximum value. Moreover, it has been empirically observed that the same phenomena also occurs when transmitting over more general classes of BMS channels. In this paper, we show that the effect of spatial coupling is not restricted to the realm of channel coding. The effect of coupling also manifests itself in compressed sensing. Specifically, we show that spatially-coupled measurement matrices have an improved sparsity to sampling threshold for reconstruction algorithms based on verification decoding. For BP-based reconstruction algorithms, this phenomenon is also tested empirically via simulation. At the block lengths accesible via simulation, the effect is rather small but, based on the threshold analysis, we believe this warrants further study. In a document network such as a citation network of scientific documents, web-logs, etc., the content produced by authors exhibits their interest in certain topics. In addition some authors influence other authors' interests. In this work, we propose to model the influence of cited authors along with the interests of citing authors. Moreover, we hypothesize that apart from the citations present in documents, the context surrounding the citation mention provides extra topical information about the cited authors. However, associating terms in the context to the cited authors remains an open problem. We propose novel document generation schemes that incorporate the context while simultaneously modeling the interests of citing authors and influence of the cited authors. Our experiments show significant improvements over baseline models for various evaluation criteria such as link prediction between document and cited author, and quantitatively explaining unseen text. Purpose – The purpose of this paper is to suggest an alternative to the widely used Times Cited criterion for analysing citation networks. The approach involves taking account of the natures of the papers that cite a given paper, so as to differentiate between papers that attract the same number of citations.Design methodology approach – ArticleRank is an algorithm that has been derived from Google's PageRank algorithm to measure the influence of journal articles. ArticleRank is applied to two datasets – a citation network based on an early paper on webometrics, and a self‐citation network based on the 19 most cited papers in the Journal of Documentation – using citation data taken from the Web of Knowledge database.Findings – ArticleRank values provide a different ranking of a set of papers from that provided by the corresponding Times Cited values, and overcomes the inability of the latter to differentiate between papers with the same numbers of citations. The difference in rankings between Times Cited ... Historically, papers have been physically bound to the journal in which they were published; but in the digital age papers are available individually, no longer tied to their respective journals. Hence, papers now can be read and cited based on their own merits, independently of the journal's physical availability, reputation, or impact factor (IF). We compare the strength of the relationship between journals' IFs and the actual citations received by their respective papers from 1902 to 2009. Throughout most of the 20th century, papers' citation rates were increasingly linked to their respective journals' IFs. However, since 1990, the advent of the digital age, the relation between IFs and paper citations has been weakening. This began first in physics, a field that was quick to make the transition into the electronic domain. Furthermore, since 1990 the overall proportion of highly cited papers coming from highly cited journals has been decreasing and, of these highly cited papers, the proportion not coming from highly cited journals has been increasing. Should this pattern continue, it might bring an end to the use of the IF as a way to evaluate the quality of journals, papers, and researchers. © 2012 Wiley Periodicals, Inc. In recent years scholars have built maps of science by connecting the academic fields that cite each other, are cited together, or that cite a similar literature. But since scholars cannot always publish in the fields they cite, or that cite them, these science maps are only rough proxies for the potential of a scholar, organization, or country, to enter a new academic field. Here we use a large dataset of scholarly publications disambiguated at the individual level to create a map of science-or research space-where links connect pairs of fields based on the probability that an individual has published in both of them. We find that the research space is a significantly more accurate predictor of the fields that individuals and organizations will enter in the future than citation based science maps. At the country level, however, the research space and citations based science maps are equally accurate. These findings show that data on career trajectories-the set of fields that individuals have previously published in-provide more accurate predictors of future research output for more focalized units-such as individuals or organizations-than citation based science maps. We study the compressed sensing reconstruction problem for a broad class of random, band-diagonal sensing matrices. This construction is inspired by the idea of spatial coupling in coding theory. As demonstrated heuristically and numerically by Krzakala [30], message passing algorithms can effectively solve the reconstruction problem for spatially coupled measurements with undersampling rates close to the fraction of nonzero coordinates. We use an approximate message passing (AMP) algorithm and analyze it through the state evolution method. We give a rigorous proof that this approach is successful as soon as the undersampling rate δ exceeds the (upper) Renyi information dimension of the signal, d(pX). More precisely, for a sequence of signals of diverging dimension n whose empirical distribution converges to pX, reconstruction is with high probability successful from d(pX) n+o(n) measurements taken according to a band diagonal matrix. For sparse signals, i.e., sequences of dimension n and k(n) nonzero entries, this implies reconstruction from k(n)+o(n) measurements. For “discrete” signals, i.e., signals whose coordinates take a fixed finite set of values, this implies reconstruction from o(n) measurements. The result is robust with respect to noise, does not apply uniquely to random signals, but requires the knowledge of the empirical distribution of the signal pX. Citation relationship between scientific publications has been successfully used for scholarly bibliometrics, information retrieval and data mining tasks, and citation-based recommendation algorithms are well documented. While previous studies investigated citation relations from various viewpoints, most of them share the same assumption that, if paper1 cites paper2 (or author1 cites author2), they are connected, regardless of citation importance, sentiment, reason, topic, or motivation. However, this assumption is oversimplified. In this study, we employ an innovative "context-rich heterogeneous network" approach, which paves a new way for citation recommendation task. In the network, we characterize 1) the importance of citation relationships between citing and cited papers, and 2) the topical citation motivation. Unlike earlier studies, the citation information, in this paper, is characterized by citation textual contexts extracted from the full-text citing paper. We also propose algorithm to cope with the situation when large portion of full-text missing information exists in the bibliographic repository. Evaluation results show that, context-rich heterogeneous network can significantly enhance the citation recommendation performance. We study the compressed sensing reconstruction problem for a broad class of random, band-diagonal sensing matrices. This construction is inspired by the idea of spatial coupling in coding theory. As demonstrated heuristically and numerically by KrzakalaEtAl , message passing algorithms can effectively solve the reconstruction problem for spatially coupled measurements with undersampling rates close to the fraction of non-zero coordinates. We use an approximate message passing (AMP) algorithm and analyze it through the state evolution method. We give a rigorous proof that this approach is successful as soon as the undersampling rate @math exceeds the (upper) R 'enyi information dimension of the signal, @math . More precisely, for a sequence of signals of diverging dimension @math whose empirical distribution converges to @math , reconstruction is with high probability successful from @math measurements taken according to a band diagonal matrix. For sparse signals, i.e., sequences of dimension @math and @math non-zero entries, this implies reconstruction from @math measurements. For discrete' signals, i.e., signals whose coordinates take a fixed finite set of values, this implies reconstruction from @math measurements. The result is robust with respect to noise, does not apply uniquely to random signals, but requires the knowledge of the empirical distribution of the signal @math . A model is presented of the manifestation of the birth and development of a scientific specialty in a collection of journal papers. The proposed model, Cumulative Advantage by Paper with Exemplars (CAPE) is an adaptation of Price's cumulative advantage model (D. Price, [1976]. Two modifications are made: (a) references are cited in groups by paper, and (b) the model accounts for the generation of highly cited exemplar references immediately after the birth of the specialty. This simple growth process mimics many characteristic features of real collections of papers, including the structure of the paper-to-reference matrix, the reference-per-paper distribution, the paper-per-reference distribution, the bibliographic coupling distribution, the cocitation distribution, the bibliographic coupling clustering coefficient distribution, and the temporal distribution of exemplar references. The model yields a great deal of insight into the process that produces the connectedness and clustering of a collection of articles and references. Two examples are presented and successfully modeled: a collection of 131 articles on MEMS RF (microelectromechnical systems radio frequency) switches, and a collection of 901 articles on the subject of complex networks. © 2005 Wiley Periodicals, Inc. Factorizing low-rank matrices has many applications in machine learning and statistics. For probabilistic models in the Bayes optimal setting, a general expression for the mutual information has been proposed using heuristic statistical physics computations, and proven in few specific cases. Here, we show how to rigorously prove the conjectured formula for the symmetric rank-one case. This allows to express the minimal mean-square-error and to characterize the detectability phase transitions in a large set of estimation problems ranging from community detection to sparse PCA. We also show that for a large set of parameters, an iterative algorithm called approximate message-passing is Bayes optimal. There exists, however, a gap between what currently known polynomial algorithms can do and what is expected information theoretically. Additionally, the proof technique has an interest of its own and exploits three essential ingredients: the interpolation method introduced in statistical physics by Guerra, the analysis of the approximate message-passing algorithm and the theory of spatial coupling and threshold saturation in coding. Our approach is generic and applicable to other open problems in statistical estimation where heuristic statistical physics predictions are available. The old Asian legend about the blind men and the elephant comes to mind when looking at how different authors of scientific papers describe a piece of related prior work. It turns out that different citations to the same paper often focus on different aspects of that paper and that neither provides a full description of its full set of contributions. In this article, we will describe our investigation of this phenomenon. We studied citation summaries in the context of research papers in the biomedical domain. A citation summary is the set of citing sentences for a given article and can be used as a surrogate for the actual article in a variety of scenarios. It contains information that was deemed by peers to be important. Our study shows that citation summaries overlap to some extent with the abstracts of the papers and that they also differ from them in that they focus on different aspects of these papers than do the abstracts. In addition to this, co-cited articles (which are pairs of articles cited by another article) tend to be similar. We show results based on a lexical similarity metric called cohesion to justify our claims. © 2008 Wiley Periodicals, Inc. An overwhelming number of news articles are available every day via the internet. Unfortunately, it is impossible for us to peruse more than a handful; furthermore it is difficult to ascertain an article’s social context, i.e., is it popular, what sorts of people are reading it, etc. In this paper, we develop a system to address this problem in the restricted domain of political news by harnessing implicit and explicit contextual information from the blogosphere. Specifically, we track thousands of blogs and the news articles they cite, collapsing news articles that have highly overlapping content. We then tag each article with the number of blogs citing it, the political orientation of those blogs, and the level of emotional charge expressed in the blog posts that link to the news article. We summarize and present the results to the user via a novel visualization which displays this contextual information; the user can then find the most popular articles, the articles most cited by liberals, the articles most emotionally discussed in the political blogosphere, etc. The popular h-index used to measure scientific output can be described in terms of a pool of evaluated objects (the papers), a quality function on the evaluated objects (the number of citations received by each paper) and a sentencing line crossing the origin, whose intersection with the graph of the quality function yields the index value (in the h-index this is a line with slope 1). Based on this abstraction, we present a new index, the c-index, in which the evaluated objects are the citations received by an author, a group of authors, a journal, etc., the quality function of a citation is the collaboration distance between the authors of the cited and the citing papers, and the sentencing line can take slopes between 0 and ∞. As a result, the new index counts only those citations which are significant enough, where significance is proportional to collaboration distance. Several advantages of the new c-index with respect to previous proposals are discussed. Compressed sensing deals with efficient recovery of analog signals from linear encodings. This paper presents a statistical study of compressed sensing by modeling the input signal as an i.i.d. process with known distribution. Three classes of encoders are considered, namely optimal nonlinear, optimal linear and random linear encoders. Focusing on optimal decoders, we investigate the fundamental tradeoff between measurement rate and reconstruction fidelity gauged by error probability and noise sensitivity in the absence and presence of measurement noise, respectively. The optimal phase transition threshold is determined as a functional of the input distribution and compared to suboptimal thresholds achieved by popular reconstruction algorithms. In particular, we show that Gaussian sensing matrices incur no penalty on the phase transition threshold with respect to optimal nonlinear encoding. Our results also provide a rigorous justification of previous results based on replica heuristics in the weak-noise regime.