Today, full-texts of scientific articles are often stored in different locations than the used datasets. Dataset registries aim at a closer integration by making datasets citable but authors typically refer to datasets using inconsistent abbreviations and heterogeneous metadata (e.g. title, publication year). It is thus hard to reproduce research results, to access datasets for further analysis, and to determine the impact of a dataset. Manually detecting references to datasets in scientific articles is time-consuming and requires expert knowledge in the underlying research domain.We propose and evaluate a semi-automatic three-step approach for finding explicit references to datasets in social sciences articles.We first extract pre-defined special features from dataset titles in the da|ra registry, then detect references to datasets using the extracted features, and finally match the references found with corresponding dataset titles. The approach does not require a corpus of articles (avoiding the cold start problem) and performs well on a test corpus. We achieved an F-measure of 0.84 for detecting references in full-texts and an F-measure of 0.83 for finding correct matches of detected references in the da|ra dataset registry.
Many different machine learning approaches have been employed for extracting metadata, and in a few cases also for detecting dataset references. For example, Zhang2006 @cite_17 and Han2003 @cite_0 proposed keyword extraction methods based on support vector machines (SVM).
@cite_0 @cite_17
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Automatic metadata generation provides scalability and usability for digital libraries and their collections. Machine learning methods offer robust and adaptable automatic metadata extraction. We describe a support vector machine classification-based method for metadata extraction from header part of research papers and show that it outperforms other machine learning methods on the same task. The method first classifies each line of the header into one or more of 15 classes. An iterative convergence procedure is then used to improve the line classification by using the predicted class labels of its neighbor lines in the previous round. Further metadata extraction is done by seeking the best chunk boundaries of each line. We found that discovery and use of the structural patterns of the data and domain based word clustering can improve the metadata extraction performance. An appropriate feature normalization also greatly improves the classification performance. Our metadata extraction method was originally designed to improve the metadata extraction quality of the digital libraries Citeseer [S. , (1999)] and EbizSearch [Y. , (2003)]. We believe it can be generalized to other digital libraries. This paper is concerned with keyword extraction. By keyword extraction, we mean extracting a subset of words phrases from a document that can describe the ‘meaning' of the document. Keywords are of benefit to many text mining applications. However, a large number of documents do not have keywords and thus it is necessary to assign keywords before enjoying the benefit from it. Several research efforts have been done on keyword extraction. These methods make use of the ‘global context information', which makes the performance of extraction restricted. A thorough and systematic investigation on the issue is thus needed. In this paper, we propose to make use of not only ‘global context information', but also ‘local context information' for extracting keywords from documents. As far as we know, utilizing both ‘global context information' and ‘local context information' in keyword extraction has not been sufficiently investigated previously. Methods for performing the tasks on the basis of Support Vector Machines have also been proposed in this paper. Features in the model have been defined. Experimental results indicate that the proposed SVM based method can significantly outperform the baseline methods for keyword extraction. The proposed method has been applied to document classification, a typical text mining processing. Experimental results show that the accuracy of document classification can be significantly improved by using the keyword extraction method. Support vector machines (SVMs) are learning systems based on the statistical learning theory, which are exhibiting good generalization ability on real data sets. Nevertheless, a possible limitation of SVM is that they generate black box models. In this work, a procedure for rule extraction from support vector machines is proposed: the SVM+Prototypes method. This method allows to give explanation ability to SVM. Once determined the decision function by means of a SVM, a clustering algorithm is used to determine prototype vectors for each class. These points are combined with the support vectors using geometric methods to define ellipsoids in the input space, which are later transfers to if-then rules. By using the support vectors we can establish the limits of these regions. Spam is a key problem in electronic communication, including large-scale email systems and the growing number of blogs. Content-based filtering is one reliable method of combating this threat in its various forms, but some academic researchers and industrial practitioners disagree on how best to filter spam. The former have advocated the use of Support Vector Machines (SVMs) for content-based filtering, as this machine learning methodology gives state-of-the-art performance for text classification. However, similar performance gains have yet to be demonstrated for online spam filtering. Additionally, practitioners cite the high cost of SVMs as reason to prefer faster (if less statistically robust) Bayesian methods. In this paper, we offer a resolution to this controversy. First, we show that online SVMs indeed give state-of-the-art classification performance on online spam filtering on large benchmark data sets. Second, we show that nearly equivalent performance may be achieved by a Relaxed Online SVM (ROSVM) at greatly reduced computational cost. Our results are experimentally verified on email spam, blog spam, and splog detection tasks. In this paper, we propose a new framework called domain adaptation machine (DAM) for the multiple source domain adaption problem. Under this framework, we learn a robust decision function (referred to as target classifier) for label prediction of instances from the target domain by leveraging a set of base classifiers which are prelearned by using labeled instances either from the source domains or from the source domains and the target domain. With the base classifiers, we propose a new domain-dependent regularizer based on smoothness assumption, which enforces that the target classifier shares similar decision values with the relevant base classifiers on the unlabeled instances from the target domain. This newly proposed regularizer can be readily incorporated into many kernel methods (e.g., support vector machines (SVM), support vector regression, and least-squares SVM (LS-SVM)). For domain adaptation, we also develop two new domain adaptation methods referred to as FastDAM and UniverDAM. In FastDAM, we introduce our proposed domain-dependent regularizer into LS-SVM as well as employ a sparsity regularizer to learn a sparse target classifier with the support vectors only from the target domain, which thus makes the label prediction on any test instance very fast. In UniverDAM, we additionally make use of the instances from the source domains as Universum to further enhance the generalization ability of the target classifier. We evaluate our two methods on the challenging TRECIVD 2005 dataset for the large-scale video concept detection task as well as on the 20 newsgroups and email spam datasets for document retrieval. Comprehensive experiments demonstrate that FastDAM and UniverDAM outperform the existing multiple source domain adaptation methods for the two applications. Several state-of-the-art event extraction systems employ models based on Support Vector Machines (SVMs) in a pipeline architecture, which fails to exploit the joint dependencies that typically exist among events and arguments. While there have been attempts to overcome this limitation using Markov Logic Networks (MLNs), it remains challenging to perform joint inference in MLNs when the model encodes many high-dimensional sophisticated features such as those essential for event extraction. In this paper, we propose a new model for event extraction that combines the power of MLNs and SVMs, dwarfing their limitations. The key idea is to reliably learn and process high-dimensional features using SVMs; encode the output of SVMs as low-dimensional, soft formulas in MLNs; and use the superior joint inferencing power of MLNs to enforce joint consistency constraints over the soft formulas. We evaluate our approach for the task of extracting biomedical events on the BioNLP 2013, 2011 and 2009 Genia shared task datasets. Our approach yields the best F1 score to date on the BioNLP’13 (53.61) and BioNLP’11 (58.07) datasets and the second-best F1 score to date on the BioNLP’09 dataset (58.16). Linear Support Vector Machines (SVMs) have become one of the most prominent machine learning techniques for high-dimensional sparse data commonly encountered in applications like text classification, word-sense disambiguation, and drug design. These applications involve a large number of examples n as well as a large number of features N, while each example has only s << N non-zero features. This paper presents a Cutting Plane Algorithm for training linear SVMs that provably has training time 0(s,n) for classification problems and o(sn log (n))for ordinal regression problems. The algorithm is based on an alternative, but equivalent formulation of the SVM optimization problem. Empirically, the Cutting-Plane Algorithm is several orders of magnitude faster than decomposition methods like svm light for large datasets. A citing sentence is one that appears in a scientific article and cites previous work. Citing sentences have been studied and used in many applications. For example, they have been used in scientific paper summarization, automatic survey generation, paraphrase identification, and citation function classification. Citing sentences that cite multiple papers are common in scientific writing. This observation should be taken into consideration when using citing sentences in applications. For instance, when a citing sentence is used in a summary of a scientific paper, only the fragments of the sentence that are relevant to the summarized paper should be included in the summary. In this paper, we present and compare three different approaches for identifying the fragments of a citing sentence that are related to a given target reference. Our methods are: word classification, sequence labeling, and segment classification. Our experiments show that segment classification achieves the best results. An Introduction to Feature Extraction.- An Introduction to Feature Extraction.- Feature Extraction Fundamentals.- Learning Machines.- Assessment Methods.- Filter Methods.- Search Strategies.- Embedded Methods.- Information-Theoretic Methods.- Ensemble Learning.- Fuzzy Neural Networks.- Feature Selection Challenge.- Design and Analysis of the NIPS2003 Challenge.- High Dimensional Classification with Bayesian Neural Networks and Dirichlet Diffusion Trees.- Ensembles of Regularized Least Squares Classifiers for High-Dimensional Problems.- Combining SVMs with Various Feature Selection Strategies.- Feature Selection with Transductive Support Vector Machines.- Variable Selection using Correlation and Single Variable Classifier Methods: Applications.- Tree-Based Ensembles with Dynamic Soft Feature Selection.- Sparse, Flexible and Efficient Modeling using L 1 Regularization.- Margin Based Feature Selection and Infogain with Standard Classifiers.- Bayesian Support Vector Machines for Feature Ranking and Selection.- Nonlinear Feature Selection with the Potential Support Vector Machine.- Combining a Filter Method with SVMs.- Feature Selection via Sensitivity Analysis with Direct Kernel PLS.- Information Gain, Correlation and Support Vector Machines.- Mining for Complex Models Comprising Feature Selection and Classification.- Combining Information-Based Supervised and Unsupervised Feature Selection.- An Enhanced Selective Naive Bayes Method with Optimal Discretization.- An Input Variable Importance Definition based on Empirical Data Probability Distribution.- New Perspectives in Feature Extraction.- Spectral Dimensionality Reduction.- Constructing Orthogonal Latent Features for Arbitrary Loss.- Large Margin Principles for Feature Selection.- Feature Extraction for Classification of Proteomic Mass Spectra: A Comparative Study.- Sequence Motifs: Highly Predictive Features of Protein Function. A novel method based on fusion of texture and shape information is proposed for facial expression and Facial Action Unit (FAU) recognition from video sequences. Regarding facial expression recognition, a subspace method based on Discriminant Non-negative Matrix Factorization (DNMF) is applied to the images, thus extracting the texture information. In order to extract the shape information, the system firstly extracts the deformed Candide facial grid that corresponds to the facial expression depicted in the video sequence. A Support Vector Machine (SVM) system designed on an Euclidean space, defined over a novel metric between grids, is used for the classification of the shape information. Regarding FAU recognition, the texture extraction method (DNMF) is applied on the differences images of the video sequence, calculated taking under consideration the neutral and the expressive frame. An SVM system is used for FAU classification from the shape information. This time, the shape information consists of the grid node coordinate displacements between the neutral and the expressed facial expression frame. The fusion of texture and shape information is performed using various approaches, among which are SVMs and Median Radial Basis Functions (MRBFs), in order to detect the facial expression and the set of present FAUs. The accuracy achieved using the Cohn-Kanade database is 92.3 when recognizing the seven basic facial expressions (anger, disgust, fear, happiness, sadness, surprise and neutral), and 92.1 when recognizing the 17 FAUs that are responsible for facial expression development. Machine learning techniques have facilitated image retrieval by automatically classifying and annotating images with keywords. Among them Support Vector Machines (SVMs) have been used extensively due to their generalization properties. However, SVM training is notably a computationally intensive process especially when the training dataset is large. This paper presents MRSMO, a MapReduce based distributed SVM algorithm for automatic image annotation. The performance of the MRSMO algorithm is evaluated in an experimental environment. By partitioning the training dataset into smaller subsets and optimizing the partitioned subsets across a cluster of computers, the MRSMO algorithm reduces the training time significantly while maintaining a high level of accuracy in both binary and multiclass classifications. Citation relationship between scientific publications has been successfully used for scholarly bibliometrics, information retrieval and data mining tasks, and citation-based recommendation algorithms are well documented. While previous studies investigated citation relations from various viewpoints, most of them share the same assumption that, if paper1 cites paper2 (or author1 cites author2), they are connected, regardless of citation importance, sentiment, reason, topic, or motivation. However, this assumption is oversimplified. In this study, we employ an innovative "context-rich heterogeneous network" approach, which paves a new way for citation recommendation task. In the network, we characterize 1) the importance of citation relationships between citing and cited papers, and 2) the topical citation motivation. Unlike earlier studies, the citation information, in this paper, is characterized by citation textual contexts extracted from the full-text citing paper. We also propose algorithm to cope with the situation when large portion of full-text missing information exists in the bibliographic repository. Evaluation results show that, context-rich heterogeneous network can significantly enhance the citation recommendation performance. Based on ideas from Support Vector Machines (SVMs), Learning To Classify Text Using Support Vector Machines presents a new approach to generating text classifiers from examples. The approach combines high performance and efficiency with theoretical understanding and improved robustness. In particular, it is highly effective without greedy heuristic components. The SVM approach is computationally efficient in training and classification, and it comes with a learning theory that can guide real-world applications. Learning To Classify Text Using Support Vector Machines gives a complete and detailed description of the SVM approach to learning text classifiers, including training algorithms, transductive text classification, efficient performance estimation, and a statistical learning model of text classification. In addition, it includes an overview of the field of text classification, making it self-contained even for newcomers to the field. This book gives a concise introduction to SVMs for pattern recognition, and it includes a detailed description of how to formulate text-classification tasks for machine learning. This paper aims to take general tensors as inputs for supervised learning. A supervised tensor learning (STL) framework is established for convex optimization based learning techniques such as support vector machines (SVM) and minimax probability machines (MPM). Within the STL framework, many conventional learning machines can be generalized to take n sup th -order tensors as inputs. We also study the applications of tensors to learning machine design and feature extraction by linear discriminant analysis (LDA). Our method for tensor based feature extraction is named the tenor rank-one discriminant analysis (TR1DA). These generalized algorithms have several advantages: 1) reduce the curse of dimension problem in machine learning and data mining; 2) avoid the failure to converge; and 3) achieve better separation between the different categories of samples. As an example, we generalize MPM to its STL version, which is named the tensor MPM (TMPM). TMPM learns a series of tensor projections iteratively. It is then evaluated against the original MPM. Our experiments on a binary classification problem show that TMPM significantly outperforms the original MPM. In many problems of machine learning, the data are distributed nonlinearly. One way to address this kind of data is training a nonlinear classifier such as kernel support vector machine (kernel SVM). However, the computational burden of kernel SVM limits its application to large scale datasets. In this paper, we propose a Clustered Support Vector Machine (CSVM), which tackles the data in a divide and conquer manner. More specifically, CSVM groups the data into several clusters, followed which it trains a linear support vector machine in each cluster to separate the data locally. Meanwhile, CSVM has an additional global regularization, which requires the weight vector of each local linear SVM aligning with a global weight vector. The global regularization leverages the information from one cluster to another, and avoids over-fitting in each cluster. We derive a data-dependent generalization error bound for CSVM, which explains the advantage of CSVM over linear SVM. Experiments on several benchmark datasets show that the proposed method outperforms linear SVM and some other related locally linear classifiers. It is also comparable to a fine-tuned kernel SVM in terms of prediction performance, while it is more efficient than kernel SVM. Two-category support vector machines (SVM) have been very popular in the machine learning community for classification problems. Solving multicategory problems by a series of binary classifiers is quite common in the SVM paradigm; however, this approach may fail under various circumstances. We propose the multicategory support vector machine (MSVM), which extends the binary SVM to the multicategory case and has good theoretical properties. The proposed method provides a unifying framework when there are either equal or unequal misclassification costs. As a tuning criterion for the MSVM, an approximate leave-one-out cross-validation function, called Generalized Approximate Cross Validation, is derived, analogous to the binary case. The effectiveness of the MSVM is demonstrated through the applications to cancer classification using microarray data and cloud classification with satellite radiance profiles. With the recent emergence of mobile platforms capable of executing increasingly complex software and the rising ubiquity of using mobile platforms in sensitive applications such as banking, there is a rising danger associated with malware targeted at mobile devices. The problem of detecting such malware presents unique challenges due to the limited resources avalible and limited privileges granted to the user, but also presents unique opportunity in the required metadata attached to each application. In this article, we present a machine learning-based system for the detection of malware on Android devices. Our system extracts a number of features and trains a One-Class Support Vector Machine in an offline (off-device) manner, in order to leverage the higher computing power of a server or cluster of servers. Use of machine learning techniques for educational proposes (or educational data mining) is an emerging field aimed at developing methods of exploring data from computational educational settings and discovering meaningful patterns. The stored data (virtual courses, e-learning log file, demographic and academic data of students, admissions registration info, and so on) can be useful for machine learning algorithms. In this article, we cite the most current articles that use machine learning techniques for educational proposes and we present a case study for predicting students' marks. Students' key demographic characteristics and their marks in a small number of written assignments can constitute the training set for a regression method in order to predict the student's performance. Finally, a prototype version of software support tool for tutors has been constructed. We investigate the problem of facial expression recognition using 3D face data. Our approach is based on local shape analysis of several relevant regions of a given face scan. These regions or patches from facial surfaces are extracted and represented by sets of closed curves. A Riemannian framework is used to derive the shape analysis of the extracted patches. The applied framework permits to calculate a similarity (or dissimilarity) distances between patches, and to compute the optimal deformation between them. Once calculated, these measures are employed as inputs to a commonly used classification techniques such as AdaBoost and Support Vector Machines (SVM). A quantitative evaluation of our novel approach is conducted on a subset of the publicly available BU-3DFE database. Scholars are increasingly citing electronic “web references” which are not preserved in libraries or full text archives. WebCite is a new standard for citing web references. To “webcite” a document involves archiving the cited Web page through www.webcitation.org and citing the WebCite permalink instead of (or in addition to) the unstable live Web page. This journal has amended its “instructions for authors” accordingly, asking authors to archive cited Web pages before submitting a manuscript. Almost 200 other journals are already using the system. We discuss the rationale for WebCite, its technology, and how scholars, editors, and publishers can benefit from the service. Citing scholars initiate an archiving process of all cited Web references, ideally before they submit a manuscript. Authors of online documents and websites which are expected to be cited by others can ensure that their work is permanently available by creating an archived copy using WebCite and providing the citation information including the WebCite link on their Web document(s). Editors should ask their authors to cache all cited Web addresses (Uniform Resource Locators, or URLs) “prospectively” before submitting their manuscripts to their journal. Editors and publishers should also instruct their copyeditors to cache cited Web material if the author has not done so already. Finally, WebCite can process publisher submitted “citing articles” (submitted for example as eXtensible Markup Language [XML] documents) to automatically archive all cited Web pages shortly before or on publication. Finally, WebCite can act as a focussed crawler, caching retrospectively references of already published articles. Copyright issues are addressed by honouring respective Internet standards (robot exclusion files, no-cache and no-archive tags). Long-term preservation is ensured by agreements with libraries and digital preservation organizations. The resulting WebCite Index may also have applications for research assessment exercises, being able to measure the impact of Web services and published Web documents through access and Web citation metrics. @PARASPLIT [J Med Internet Res 2005;7(5):e60]