We perform the first study of the tradeoff space of access methods and replication to support statistical analytics using first-order methods executed in the main memory of a Non-Uniform Memory Access (NUMA) machine. Statistical analytics systems differ from conventional SQL-analytics in the amount and types of memory incoherence they can tolerate. Our goal is to understand tradeoffs in accessing the data in row- or column-order and at what granularity one should share the model and data for a statistical task. We study this new tradeoff space, and discover there are tradeoffs between hardware and statistical efficiency. We argue that our tradeoff study may provide valuable information for designers of analytics engines: for each system we consider, our prototype engine can run at least one popular task at least 100x faster. We conduct our study across five architectures using popular models including SVMs, logistic regression, Gibbs sampling, and neural networks.
There is a large body of data mining literature regarding how to optimize various algorithms to be more architecturally aware @cite_5 @cite_7 @cite_54 . @cite_5 @cite_7 study the performance of a range of different algorithms, including associated rule mining and decision tree on shared-memory machines, by improving memory locality and data placement in the granularity of cachelines, and decreasing the cost of coherent maintenance between multiple CPU caches. @cite_20 optimize the cache behavior of frequent pattern mining using novel cache-conscious techniques, including spatial and temporal locality, prefetching, and tiling. @cite_17 discuss tradeoffs in replication and locking schemes for K-means, association rule mining, and neural nets. This work considers the hardware efficiency of the algorithm, but not statistical efficiency, which is the focus of . In addition, do not consider lock-free execution, a key aspect of this paper.
@cite_7 @cite_54 @cite_5 @cite_20 @cite_17
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With recent technological advances, shared memory parallel machines have become more scalable, and offer large main memories and high bus bandwidths. They are emerging as good platforms for data warehousing and data mining. In This work, we focus on shared memory parallelization of data mining algorithms. We have developed a series of techniques for parallelization of data mining algorithms, including full replication, full locking, fixed locking, optimized full locking, and cache-sensitive locking. Unlike previous work on shared memory parallelization of specific data mining algorithms, all of our techniques apply to a large number of popular data mining algorithms. In addition, we propose a reduction-object-based interface for specifying a data mining algorithm. We show how our runtime system can apply any of the techniques we have developed starting from a common specification of the algorithm. We have carried out a detailed evaluation of the parallelization techniques and the programming interface. We have experimented with apriori and fp-tree-based association mining, k-means clustering, k-nearest neighbor classifier, and decision tree construction. The main results from our experiments are as follows: 1) Among full replication, optimized full locking, and cache-sensitive locking, there is no clear winner. Each of these three techniques can outperform others depending upon machine and dataset parameters. These three techniques perform significantly better than the other two techniques. 2) Good parallel efficiency is achieved for each of the four algorithms we experimented with, using our techniques and runtime system. 3) The overhead of the interface is within 10 percent in almost all cases. 4) In the case of decision tree construction, combining different techniques turned out to be crucial for achieving high performance. Algorithms are typically designed to exploit the current state of the art in processor technology. However, as processor technology evolves, said algorithms are often unable to derive the maximum achievable performance on these modern architectures. In this paper, we examine the performance of frequent pattern mining algorithms on a modern processor. A detailed performance study reveals that even the best frequent pattern mining implementations, with highly efficient memory managers, still grossly under-utilize a modern processor. The primary performance bottlenecks are poor data locality and low instruction level parallelism (ILP). We propose a cache-conscious prefix tree to address this problem. The resulting tree improves spatial locality and also enhances the benefits from hardware cache line prefetching. Furthermore, the design of this data structure allows the use of path tiling, a novel tiling strategy, to improve temporal locality. The result is an overall speedup of up to 3.2 when compared with state of the art implementations. We then show how these algorithms can be improved further by realizing a non-naive thread-based decomposition that targets simultaneously multi-threaded processors (SMT). A key aspect of this decomposition is to ensure cache re-use between threads that are co-scheduled at a fine granularity. This optimization affords an additional speedup of 50 , resulting in an overall speedup of up to 4.8. The proposed optimizations also provide performance improvements on SMPs, and will most likely be beneficial on emerging processors. Scholars are increasingly citing electronic “web references” which are not preserved in libraries or full text archives. WebCite is a new standard for citing web references. To “webcite” a document involves archiving the cited Web page through www.webcitation.org and citing the WebCite permalink instead of (or in addition to) the unstable live Web page. This journal has amended its “instructions for authors” accordingly, asking authors to archive cited Web pages before submitting a manuscript. Almost 200 other journals are already using the system. We discuss the rationale for WebCite, its technology, and how scholars, editors, and publishers can benefit from the service. Citing scholars initiate an archiving process of all cited Web references, ideally before they submit a manuscript. Authors of online documents and websites which are expected to be cited by others can ensure that their work is permanently available by creating an archived copy using WebCite and providing the citation information including the WebCite link on their Web document(s). Editors should ask their authors to cache all cited Web addresses (Uniform Resource Locators, or URLs) “prospectively” before submitting their manuscripts to their journal. Editors and publishers should also instruct their copyeditors to cache cited Web material if the author has not done so already. Finally, WebCite can process publisher submitted “citing articles” (submitted for example as eXtensible Markup Language [XML] documents) to automatically archive all cited Web pages shortly before or on publication. Finally, WebCite can act as a focussed crawler, caching retrospectively references of already published articles. Copyright issues are addressed by honouring respective Internet standards (robot exclusion files, no-cache and no-archive tags). Long-term preservation is ensured by agreements with libraries and digital preservation organizations. The resulting WebCite Index may also have applications for research assessment exercises, being able to measure the impact of Web services and published Web documents through access and Web citation metrics. @PARASPLIT [J Med Internet Res 2005;7(5):e60] Classification, which involves finding rules that partition a given da.ta set into disjoint groups, is one class of data mining problems. Approaches proposed so far for mining classification rules for large databases are mainly decision tree based symbolic learning methods. The connectionist approach based on neura.l networks has been thought not well suited for data mining. One of the major reasons cited is that knowledge generated by neural networks is not explicitly represented in the form of rules suitable for verification or interpretation by humans. This paper examines this issue. With our newly developed algorithms, rules which are similar to, or more concise than those generated by the symbolic methods can be extracted from the neural networks. The data mining process using neural networks with the emphasis on rule extraction is described. ExperimenM results and comparison with previously published works are presented. Citation relationship between scientific publications has been successfully used for scholarly bibliometrics, information retrieval and data mining tasks, and citation-based recommendation algorithms are well documented. While previous studies investigated citation relations from various viewpoints, most of them share the same assumption that, if paper1 cites paper2 (or author1 cites author2), they are connected, regardless of citation importance, sentiment, reason, topic, or motivation. However, this assumption is oversimplified. In this study, we employ an innovative "context-rich heterogeneous network" approach, which paves a new way for citation recommendation task. In the network, we characterize 1) the importance of citation relationships between citing and cited papers, and 2) the topical citation motivation. Unlike earlier studies, the citation information, in this paper, is characterized by citation textual contexts extracted from the full-text citing paper. We also propose algorithm to cope with the situation when large portion of full-text missing information exists in the bibliographic repository. Evaluation results show that, context-rich heterogeneous network can significantly enhance the citation recommendation performance. In a document network such as a citation network of scientific documents, web-logs, etc., the content produced by authors exhibits their interest in certain topics. In addition some authors influence other authors' interests. In this work, we propose to model the influence of cited authors along with the interests of citing authors. Moreover, we hypothesize that apart from the citations present in documents, the context surrounding the citation mention provides extra topical information about the cited authors. However, associating terms in the context to the cited authors remains an open problem. We propose novel document generation schemes that incorporate the context while simultaneously modeling the interests of citing authors and influence of the cited authors. Our experiments show significant improvements over baseline models for various evaluation criteria such as link prediction between document and cited author, and quantitatively explaining unseen text. Computer systems have enjoyed an exponential growth in processor speed for the past 20 years, while main memory speed has improved only moderately. Today a cache miss to main memory takes hundreds of processor cycles. Recent studies have demonstrated that on commercial databases, about 50 or more of execution time in memory is often wasted due to cache misses. In light of this problem, a number of recent studies focused on reducing the number of cache misses of database algorithms. In this thesis, we investigate a different approach: reducing the impact of cache misses through a technique called cache prefetching. Since prefetching for sequential array accesses has been well studied, we are interested in studying non-contiguous access patterns found in two classes of database algorithms: the B+-Tree index algorithm and the hash join algorithm. We re-examine their designs with cache prefetching in mind, and combine prefetching and data locality optimizations to achieve good cache performance. For B+-Trees, we first propose and evaluate a novel main memory index structure, Prefetching B+Trees, which uses prefetching to accelerate two major access patterns of B+-Tree indices: searches and range scans. We then apply our findings in the development of a novel index structure, Fractal Prefetching B+-Trees, that optimizes index operations both for CPU cache performance and for disk performance in commercial database systems by intelligently embedding cache-optimized trees into disk pages. For hash joins, we first exploit cache prefetching separately for the I O partition phase and the join phase of the algorithm. We propose and evaluate two techniques, Group Prefetching and Software-Pipelined Prefetching, that exploit inter-tuple parallelism to overlap cache misses across the processing of multiple tuples. Then we present a novel algorithm, Inspector Joins, that exploits the free information obtained from one pass of the hash join algorithm to improve the performance of a later pass. This new algorithm addresses the memory bandwidth sharing problem in shared-bus multiprocessor systems. We compare our techniques against state-of-the-art cache-friendly algorithms for B+-Trees and hash joins through both simulation studies and real machine experiments. Our experimental results demonstrate dramatic performance benefits of our cache prefetching enabled techniques. A citing sentence is one that appears in a scientific article and cites previous work. Citing sentences have been studied and used in many applications. For example, they have been used in scientific paper summarization, automatic survey generation, paraphrase identification, and citation function classification. Citing sentences that cite multiple papers are common in scientific writing. This observation should be taken into consideration when using citing sentences in applications. For instance, when a citing sentence is used in a summary of a scientific paper, only the fragments of the sentence that are relevant to the summarized paper should be included in the summary. In this paper, we present and compare three different approaches for identifying the fragments of a citing sentence that are related to a given target reference. Our methods are: word classification, sequence labeling, and segment classification. Our experiments show that segment classification achieves the best results. Previous research indicates that during the past 20 years, the highest-quality work has been published in an increasingly diverse and larger group of journals. In this article, we examine whether this diversification has also affected the handful of elite journals that are traditionally considered to be the best. We examine citation patterns during the past 40 years of seven long-standing traditionally elite journals and six journals that have been increasing in importance during the past 20 years. To be among the top 5 or 1 cited papers, papers now need about twice as many citations as they did 40 years ago. Since the late 1980s and early 1990s, elite journals have been publishing a decreasing proportion of these top-cited papers. This also applies to the two journals that are typically considered as the top venues and often used as bibliometric indicators of "excellence": Science and Nature. On the other hand, several new and established journals are publishing an increasing proportion of the most-cited papers. These changes bring new challenges and opportunities for all parties. Journals can enact policies to increase or maintain their relative position in the journal hierarchy. Researchers now have the option to publish in more diverse venues knowing that their work can still reach the same audiences. Finally, evaluators and administrators need to know that although there will always be a certain prestige associated with publishing in "elite" journals, journal hierarchies are in constant flux. Cloud services are rapidly gaining adoption due to the promises of cost efficiency, availability, and on-demand scaling. To achieve these promises, cloud providers share physical resources to support multi-tenancy of cloud platforms. However, the possibility of sharing the same hardware with potential attackers makes users reluctant to offload sensitive data into the cloud. Worse yet, researchers have demonstrated side channel attacks via shared memory caches to break full encryption keys of AES, DES, and RSA. We present STEALTHMEM, a system-level protection mechanism against cache-based side channel attacks in the cloud. STEALTHMEM manages a set of locked cache lines per core, which are never evicted from the cache, and efficiently multiplexes them so that each VM can load its own sensitive data into the locked cache lines. Thus, any VM can hide memory access patterns on confidential data from other VMs. Unlike existing state-of-the-art mitigation methods, STEALTHMEM works with existing commodity hardware and does not require profound changes to application software. We also present a novel idea and prototype for isolating cache lines while fully utilizing memory by exploiting architectural properties of set-associative caches. STEALTHMEM imposes 5.9 of performance overhead on the SPEC 2006 CPU benchmark, and between 2 and 5 overhead on secured AES, DES and Blowfish, requiring only between 3 and 34 lines of code changes from the original implementations. Abstract Documents in computer-readable form can be used to provide information about other documents, i.e. those they cite. To do this efficiently requires procedures for computer recognition of citing statements. This is not easy, especially for multi-sentence citing statements. Computer recognition procedures have been developed which are accurate to the following extent: 73 of the words in statements selected by computer procedures as being citing statements are words which are correctly attributable to the corresponding documents. The retrieval effectiveness of computer-recognized citing statements was tested in the following way. First, for eight retrieval requests in inorganiic chemistry, average recall by search of Chemical Abstracts Service indexing and Chemical Abstracts abstract text words was found to be 50 . Words from citing statements referring to the papers to be retrieved were then added to the index terms and abstract words as additional access points, and searching was repeated. Average recall increased to 70 . Only words from citing statements published within a year of the cited papers were used. The retrieval effect of citing statement words alone (published within a year) without index or abstract terms was the following: average recall was 40 . When just the words of the titles of the cited papers were added to those citing statement words, average recall increased to 50 . A new form of document coupling called co-citation is defined as the frequency with which two documents are cited together. The co-citation frequency of two scientific papers can be determined by comparing lists of citing documents in the Science Citation Index and counting identical entries. Networks of co-cited papers can be generated for specific scientific specialties, and an example is drawn from the literature of particle physics. Co-citation patterns are found to differ significantly from bibliographic coupling patterns, but to agree generally with patterns of direct citation. Clusters of co-cited papers provide a new way to study the specialty structure of science. They may provide a new approach to indexing and to the creation of SDI profiles. We consider a basic cache network, in which a single server is connected to multiple users via a shared bottleneck link. The server has a database of files (content). Each user has an isolated memory that can be used to cache content in a prefetching phase. In a following delivery phase, each user requests a file from the database, and the server needs to deliver users’ demands as efficiently as possible by taking into account their cache contents. We focus on an important and commonly used class of prefetching schemes, where the caches are filled with uncoded data. We provide the exact characterization of the rate-memory tradeoff for this problem, by deriving both the minimum average rate (for a uniform file popularity) and the minimum peak rate required on the bottleneck link for a given cache size available at each user. In particular, we propose a novel caching scheme, which strictly improves the state of the art by exploiting commonality among user demands. We then demonstrate the exact optimality of our proposed scheme through a matching converse, by dividing the set of all demands into types, and showing that the placement phase in the proposed caching scheme is universally optimal for all types. Using these techniques, we also fully characterize the rate-memory tradeoff for a decentralized setting, in which users fill out their cache content without any coordination. In this work, we study the use of Twitter by House, Senate and gubernatorial candidates during the midterm (2010) elections in the U.S. Our data includes almost 700 candidates and over 690k documents that they produced and cited in the 3.5 years leading to the elections. We utilize graph and text mining techniques to analyze differences between Democrats, Republicans and Tea Party candidates, and suggest a novel use of language modeling for estimating content cohesiveness. Our findings show significant differences in the usage patterns of social media, and suggest conservative candidates used this medium more effectively, conveying a coherent message and maintaining a dense graph of connections. Despite the lack of party leadership, we find Tea Party members display both structural and language-based cohesiveness. Finally, we investigate the relation between network structure, content and election results by creating a proof-of-concept model that predicts candidate victory with an accuracy of 88.0 . The old Asian legend about the blind men and the elephant comes to mind when looking at how different authors of scientific papers describe a piece of related prior work. It turns out that different citations to the same paper often focus on different aspects of that paper and that neither provides a full description of its full set of contributions. In this article, we will describe our investigation of this phenomenon. We studied citation summaries in the context of research papers in the biomedical domain. A citation summary is the set of citing sentences for a given article and can be used as a surrogate for the actual article in a variety of scenarios. It contains information that was deemed by peers to be important. Our study shows that citation summaries overlap to some extent with the abstracts of the papers and that they also differ from them in that they focus on different aspects of these papers than do the abstracts. In addition to this, co-cited articles (which are pairs of articles cited by another article) tend to be similar. We show results based on a lexical similarity metric called cohesion to justify our claims. © 2008 Wiley Periodicals, Inc. Purpose – The purpose of this paper is to suggest an alternative to the widely used Times Cited criterion for analysing citation networks. The approach involves taking account of the natures of the papers that cite a given paper, so as to differentiate between papers that attract the same number of citations.Design methodology approach – ArticleRank is an algorithm that has been derived from Google's PageRank algorithm to measure the influence of journal articles. ArticleRank is applied to two datasets – a citation network based on an early paper on webometrics, and a self‐citation network based on the 19 most cited papers in the Journal of Documentation – using citation data taken from the Web of Knowledge database.Findings – ArticleRank values provide a different ranking of a set of papers from that provided by the corresponding Times Cited values, and overcomes the inability of the latter to differentiate between papers with the same numbers of citations. The difference in rankings between Times Cited ... Historically, papers have been physically bound to the journal in which they were published; but in the digital age papers are available individually, no longer tied to their respective journals. Hence, papers now can be read and cited based on their own merits, independently of the journal's physical availability, reputation, or impact factor (IF). We compare the strength of the relationship between journals' IFs and the actual citations received by their respective papers from 1902 to 2009. Throughout most of the 20th century, papers' citation rates were increasingly linked to their respective journals' IFs. However, since 1990, the advent of the digital age, the relation between IFs and paper citations has been weakening. This began first in physics, a field that was quick to make the transition into the electronic domain. Furthermore, since 1990 the overall proportion of highly cited papers coming from highly cited journals has been decreasing and, of these highly cited papers, the proportion not coming from highly cited journals has been increasing. Should this pattern continue, it might bring an end to the use of the IF as a way to evaluate the quality of journals, papers, and researchers. © 2012 Wiley Periodicals, Inc. As the gap between memory and processor performance continues to widen, it becomes increasingly important to exploit cache memory eflectively. Both hardware and aoftware approaches can be explored to optimize cache performance. Hardware designers focus on cache organization issues, including replacement policy, associativity, line size and the resulting cache access time. Software writers use various optimization techniques, including software prefetching, data scheduling and code reordering. Our focus is on improving memory usage through code reordering compiler techniques.In this paper we present a link-time procedure mapping algorithm which can significantly improve the eflectiveness of the instruction cache. Our algorithm produces an improved program layout by performing a color mapping of procedures to cache lines, taking into consideration the procedure size, cache size, cache line size, and call graph. We use cache line coloring to guide the procedure mapping, indicating which cache lines to avoid when placing a procedure in the program layout. Our algorithm reduces on average the instruction cache miss rate by 40 over the original mapping and by 17 over the mapping algorithm of Pettis and Hansen [12]. We propose an efficient frequent activity patterns mining in smart environments.We build an accurate activity classifier based on the mined frequent patterns.We distinguish overlapped activities with global and local weights of sensor events.We use publicly available dataset of smart environments to validate our methods. In the past decades, activity recognition has aroused a great interest for the research groups majoring in context-awareness computing and human behaviours monitoring. However, the correlations between the activities and their frequent patterns have never been directly addressed by traditional activity recognition techniques. As a result, activities that trigger the same set of sensors are difficult to differentiate, even though they present different patterns such as different frequencies of the sensor events. In this paper, we propose an efficient association rule mining technique to find the association rules between the activities and their frequent patterns, and build an activity classifier based on these association rules. We also address the classification of overlapped activities by incorporating the global and local weight of the patterns. The experiment results using publicly available dataset demonstrate that our method is able to achieve better performance than traditional recognition methods such as Decision Tree, Naive Bayesian and HMM. Comparison studies show that the proposed association rule mining method is efficient, and we can further improve the activity recognition accuracy by considering global and local weight of frequent patterns of activities. A shared data structure is lock-free if its operations do not require mutual exclusion. If one process is interrupted in the middle of an operation, other processes will not be prevented from operating on that object. In highly concurrent systems, lock-free data structures avoid common problems associated with conventional locking techniques, including priority inversion, convoying, and difficulty of avoiding deadlock. This paper introduces transactional memory , a new multiprocessor architecture intended to make lock-free synchronization as efficient (and easy to use) as conventional techniques based on mutual exclusion. Transactional memory allows programmers to define customized read-modify-write operations that apply to multiple, independently-chosen words of memory. It is implemented by straightforward extensions to any multiprocessor cache-coherence protocol. Simulation results show that transactional memory matches or outperforms the best known locking techniques for simple benchmarks, even in the absence of priority inversion, convoying, and deadlock.