Clustering in high-dimensional spaces is nowadays a recurrent problem in many scientific domains but remains a difficult task from both the clustering accuracy and the result understanding points of view. This paper presents a discriminative latent mixture (DLM) model which fits the data in a latent orthonormal discriminative subspace with an intrinsic dimension lower than the dimension of the original space. By constraining model parameters within and between groups, a family of 12 parsimonious DLM models is exhibited which allows to fit onto various situations. An estimation algorithm, called the Fisher-EM algorithm, is also proposed for estimating both the mixture parameters and the discriminative subspace. Experiments on simulated and real datasets highlight the good performance of the proposed approach as compared to existing clustering methods while providing a useful representation of the clustered data. The method is as well applied to the clustering of mass spectrometry data.
Earliest approaches proposed to overcome the problem of high dimension in clustering by reducing the dimension before using a traditional clustering method. Among the unsupervised tools of dimension reduction, PCA @cite_42 is the traditional and certainly the most used technique for dimension reduction. It aims to project the data on a lower dimensional subspace in which axes are built by maximizing the variance of the projected data. Non-linear projection methods can also be used. We refer to @cite_43 for a review on these alternative dimension reduction techniques. In a similar spirit, the generative topographic mapping (GTM) @cite_22 finds a non linear transformation of the data to map them on low-dimensional grid. An other way to reduce the dimension is to select relevant variables among the original variables. This problem has been recently considered in the clustering context by @cite_46 and @cite_34 . @cite_1 and @cite_18 , the problem of feature selection for model-based clustering is recasted as a model selection problem. However, such approaches remove variables and consequently information which could have been discriminative for the clustering task.
@cite_18 @cite_22 @cite_42 @cite_1 @cite_43 @cite_46 @cite_34
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This article is concerned with variable selection for cluster analysis. The problem is regarded as a model selection problem in the model-based cluster analysis context. A general model generalizing the model of Raftery and Dean (2006) is proposed to specify the role of each variable. This model does not need any prior assumptions about the link between the selected and discarded variables. Models are compared with BIC. Variables role is obtained through an algorithm embedding two backward stepwise variable selection algorithms for clustering and linear regression. The consistency of the resulting criterion is proved under regularity conditions. Numerical experiments on simulated datasets and a genomics application highlight the interest of the proposed variable selection procedure. Latent variable models represent the probability density of data in a space of several dimensions in terms of a smaller number of latent, or hidden, variables. A familiar example is factor analysis which is based on a linear transformations between the latent space and the data space. In this paper we introduce a form of non-linear latent variable model called the Generative Topographic Mapping, for which the parameters of the model can be determined using the EM algorithm. GTM provides a principled alternative to the widely used Self-Organizing Map (SOM) of Kohonen (1982), and overcomes most of the significant limitations of the SOM. We demonstrate the performance of the GTM algorithm on a toy problem and on simulated data from flow diagnostics for a multi-phase oil pipeline. Introduction * Properties of Population Principal Components * Properties of Sample Principal Components * Interpreting Principal Components: Examples * Graphical Representation of Data Using Principal Components * Choosing a Subset of Principal Components or Variables * Principal Component Analysis and Factor Analysis * Principal Components in Regression Analysis * Principal Components Used with Other Multivariate Techniques * Outlier Detection, Influential Observations and Robust Estimation * Rotation and Interpretation of Principal Components * Principal Component Analysis for Time Series and Other Non-Independent Data * Principal Component Analysis for Special Types of Data * Generalizations and Adaptations of Principal Component Analysis We consider the problem of variable or feature selection for model-based clustering. The problem of comparing two nested subsets of variables is recast as a model comparison problem and addressed using approximate Bayes factors. A greedy search algorithm is proposed for finding a local optimum in model space. The resulting method selects variables (or features), the number of clusters, and the clustering model simultaneously. We applied the method to several simulated and real examples and found that removing irrelevant variables often improved performance. Compared with methods based on all of the variables, our variable selection method consistently yielded more accurate estimates of the number of groups and lower classification error rates, as well as more parsimonious clustering models and easier visualization of results. Modern data analysis tools have to work on high-dimensional data, whose components are not independently distributed. High-dimensional spaces show surprising, counter-intuitive geometrical properties that have a large influence on the performances of data analysis tools. Among these properties, the concentration of the norm phenomenon results in the fact that Euclidean norms and Gaussian kernels, both commonly used in models, become inappropriate in high-dimensional spaces. This papers presents alternative distance measures and kernels, together with geometrical methods to decrease the dimension of the space. The methodology is applied to a typical time series prediction example. This paper presents an unsupervised approach for feature selection and extraction in mixtures of generalized Dirichlet (GD) distributions. Our method defines a new mixture model that is able to extract independent and non-Gaussian features without loss of accuracy. The proposed model is learned using the expectation-maximization algorithm by minimizing the message length of the data set. Experimental results show the merits of the proposed methodology in the categorization of object images. Clustering is a common unsupervised learning technique used to discover group structure in a set of data. While there exist many algorithms for clustering, the important issue of feature selection, that is, what attributes of the data should be used by the clustering algorithms, is rarely touched upon. Feature selection for clustering is difficult because, unlike in supervised learning, there are no class labels for the data and, thus, no obvious criteria to guide the search. Another important problem in clustering is the determination of the number of clusters, which clearly impacts and is influenced by the feature selection issue. In this paper, we propose the concept of feature saliency and introduce an expectation-maximization (EM) algorithm to estimate it, in the context of mixture-based clustering. Due to the introduction of a minimum message length model selection criterion, the saliency of irrelevant features is driven toward zero, which corresponds to performing feature selection. The criterion and algorithm are then extended to simultaneously estimate the feature saliencies and the number of clusters.