System dynamics and agent based simulation models can both be used to model and understand interactions of entities within a population. Our modeling work presented here is concerned with understanding the suitability of the different types of simulation for the immune system aging problems and comparing their results. We are trying to answer questions such as: How fit is the immune system given a certain age? Would an immune boost be of therapeutic value, e.g. to improve the effectiveness of a simultaneous vaccination? Understanding the processes of immune system aging and degradation may also help in development of therapies that reverse some of the damages caused thus improving life expectancy. Therefore as a first step our research focuses on T cells; major contributors to immune system functionality. One of the main factors influencing immune system aging is the output rate of naive T cells. Of further interest is the number and phenotypical variety of these cells in an individual, which will be the case study focused on in this paper.
In @cite_6 , the authors show the application of both SD and ABS to simulate non-equilibrium ligand-receptor dynamics over a broad range of concentrations. They concluded that both approaches are powerful tools and are also complementary. In addition, in their case study, they did not indicate a preferred paradigm, although SD is an obvious choice when studying systems at a high level of aggregation and abstraction, and ABS is well suited to studying phenomena at the level of individual receptors and molecules.
@cite_6
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Cellular receptor dynamics are often analyzed using differential equations, making system dynamics (SD) a candidate methodology. In some cases it may be useful to model the phenomena at the biomolecular level, especially when concentrations and reaction probabilities are low and might lead to unexpected behavior modes. In such cases, agent-based simulation (ABS) may be useful. We show the application of both SD and ABS to simulate non-equilibrium ligand-receptor dynamics over a broad range of concentrations, where the probability of interaction varies from low to very low. Both approaches offer much to the researcher and are complementary. We did not find a clear demarcation indicating when one paradigm or the other would be strongly preferred, although SD is an obvious choice when studying systems at a high level of aggregation and abstraction, and ABS is well suited to studying phenomena at the level of individual receptors and molecules.