Myocardial contrast echocardiography (MCE) is an imaging technique that assesses left ventricle function and myocardial perfusion for the detection of coronary artery diseases. Automatic MCE perfusion quantification is challenging and requires accurate segmentation of the myocardium from noisy and time-varying images. Random forests (RF) have been successfully applied to many medical image segmentation tasks. However, the pixel-wise RF classifier ignores contextual relationships between label outputs of individual pixels. RF which only utilizes local appearance features is also susceptible to data suffering from large intensity variations. In this paper, we demonstrate how to overcome the above limitations of classic RF by presenting a fully automatic segmentation pipeline for myocardial segmentation in full-cycle 2-D MCE data. Specifically, a statistical shape model is used to provide shape prior information that guide the RF segmentation in two ways. First, a novel shape model (SM) feature is incorporated into the RF framework to generate a more accurate RF probability map. Second, the shape model is fitted to the RF probability map to refine and constrain the final segmentation to plausible myocardial shapes. We further improve the performance by introducing a bounding box detection algorithm as a preprocessing step in the segmentation pipeline. Our approach on 2-D image is further extended to 2-D+t sequences which ensures temporal consistency in the final sequence segmentations. When evaluated on clinical MCE data sets, our proposed method achieves notable improvement in segmentation accuracy and outperforms other state-of-the-art methods, including the classic RF and its variants, active shape model and image registration.
The second category uses machine learning techniques to solve the segmentation task which is often cast as a pixel-wise classification problem. For example, @cite_19 use an artificial neural network for pixel classification while @cite_14 combine maximum a posteriori and Markov random field methods for region-based segmentation. For the purpose of this paper, we focus on the RF @cite_38 as the classifier due to its accuracy and computational efficiency. RF has been successfully applied to various segmentation tasks in the medical imaging field @cite_17 @cite_16 @cite_15 .
@cite_38 @cite_14 @cite_19 @cite_15 @cite_16 @cite_17
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Displayed ultrasound (US) B-mode images often exhibit tissue intensity inhomogeneities dominated by nonuniform beam attenuation within the body. This is a major problem for intensity-based, automatic segmentation of video-intensity images because conventional threshold-based or intensity-statistic-based approaches do not work well in the presence of such image distortions. Time gain compensation (TGC) is typically used in standard US machines in an attempt to overcome this. However this compensation method is position-dependent which means that different tissues in the same TGC time-range (or corresponding depth range) will be, incorrectly, compensated by the same amount. Compensation should really be tissue-type dependent but automating this step is difficult. The main contribution of this paper is to develop a method for simultaneous estimation of video-intensity inhomogeneities and segmentation of US image tissue regions. The method uses a combination of the maximum a posteriori (MAP) and Markov random field (MRF) methods to estimate the US image distortion field assuming it follows a multiplicative model while at the same time labeling image regions based on the corrected intensity statistics. The MAP step is used to estimate the intensity model parameters while the MRF step provides a novel way of incorporating the distributions of image tissue classes as a spatial smoothness constraint. We explain how this multiplicative model can be related to the ultrasonic physics of image formation to justify our approach. Experiments are presented on synthetic images and a gelatin phantom to evaluate quantitatively the accuracy of the method. We also discuss qualitatively the application of the method to clinical breast and cardiac US images. Limitations of the method and potential clinical applications are outlined in the conclusion. This study investigated the use of artificial neural networks (ANN) for image segmentation and spatial temporal contour linking for the detection of endocardial contours on echocardiographic images. Using a backpropagation network, the system was trained with 279 sample regions obtained from eight training images to segment images into either tissue or blood pool region. The ANN system was then applied to parasternal short axis images of 38 patients. Spatial temporal contour linking was performed on the segmented images to extract endocardial boarders. Left ventricular areas (end-systolic and end-diastolic) determined with the automated system were calculated and compared to results obtained by manual contour tracing performed by two independent investigators. In addition, ejection fractions (EF) were derived using the area-length method and compared with radionuclide ventriculography. Image quality was classified as good in 12 (32 ), moderate in 13 (34 ) and poor in 13 (34 ) patients. The ANN system provided estimates of end-diastolic and end-systolic areas in 36 (89 ) of echocardiograms, which correlated well with those obtained by manual tracing (R = 0.99, SEE = 1.44). A good agreement was also found for the comparison of EF between the ANN system and Tc-radionuclide ventriculography (RNV, R = 0.93, SEE = 6.36). The ANN system also performed well in the subset of patients with poor image quality. Endocardial contour detection using artificial neural networks and spatial temporal contour linking allows accurate calculations of ventricular areas from transthoracic echocardiograms and performs well even in images with poor quality. This system could greatly enhance the feasibility, accuracy and reproducibility of calculating cardiac areas to derive left ventricular volumes and ejection fractions. In this paper we present a new method for fully automatic left ventricle segmentation from 4D cardiac MR datasets. To deal with the diverse dataset, we propose a machine learning approach using two layers of spatio-temporal decision forests with almost no assumptions on the data nor explicitly specifying the segmentation rules. We introduce 4D spatio-temporal features to classification with decision forests and propose a method for context aware MR intensity standardization and image alignment. The second layer is then used for the final image segmentation. We present our first results on the STACOM LV Segmentation Challenge 2011 validation datasets. This work addresses the challenging problem of simultaneously segmenting multiple anatomical structures in highly varied CT scans. We propose the entangled decision forest (EDF) as a new discriminative classifier which augments the state of the art decision forest, resulting in higher prediction accuracy and shortened decision time. Our main contribution is two-fold. First, we propose entangling the binary tests applied at each tree node in the forest, such that the test result can depend on the result of tests applied earlier in the same tree and at image points offset from the voxel to be classified. This is demonstrated to improve accuracy and capture long-range semantic context. Second, during training, we propose injecting randomness in a guided way, in which node feature types and parameters are randomly drawn from a learned (non-uniform) distribution. This further improves classification accuracy. We assess our probabilistic anatomy segmentation technique using a labeled database of CT image volumes of 250 different patients from various scan protocols and scanner vendors. In each volume, 12 anatomical structures have been manually segmented. The database comprises highly varied body shapes and sizes, a wide array of pathologies, scan resolutions, and diverse contrast agents. Quantitative comparisons with state of the art algorithms demonstrate both superior test accuracy and computational efficiency. A new algorithm is presented for the automatic segmentation of Multiple Sclerosis (MS) lesions in 3D Magnetic Resonance (MR) images. It builds on a discriminative random decision forest framework to provide a voxel-wise probabilistic classification of the volume. The method uses multi-channel MR intensities (T1, T2, and FLAIR), knowledge on tissue classes and long-range spatial context to discriminate lesions from background. A symmetry feature is introduced accounting for the fact that some MS lesions tend to develop in an asymmetric way. Quantitative evaluation of the proposed methods is carried out on publicly available labeled cases from the MICCAI MS Lesion Segmentation Challenge 2008 dataset. When tested on the same data, the presented method compares favorably to all earlier methods. In an a posteriori analysis, we show how selected features during classification can be ranked according to their discriminative power and reveal the most important ones.