k-medoids algorithm is a partitional, centroid-based clustering algorithm which uses pairwise distances of data points and tries to directly decompose the dataset with @math points into a set of @math disjoint clusters. However, k-medoids itself requires all distances between data points that are not so easy to get in many applications. In this paper, we introduce a new method which requires only a small proportion of the whole set of distances and makes an effort to estimate an upper-bound for unknown distances using the inquired ones. This algorithm makes use of the triangle inequality to calculate an upper-bound estimation of the unknown distances. Our method is built upon a recursive approach to cluster objects and to choose some points actively from each bunch of data and acquire the distances between these prominent points from oracle. Experimental results show that the proposed method using only a small subset of the distances can find proper clustering on many real-world and synthetic datasets.
An active clustering method for k-median clustering has also been proposed in @cite_22 . This method selects some points as the landmarks and ask the distances between these landmarks and all the other data points as queries. Finally, k-median clustering is done using these distances.
@cite_22
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Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model we assume that we have access to one versus all queries that given a point s ∈ S return the distances between s and all other points. We show that given a natural assumption about the structure of the instance, we can efficiently find an accurate clustering using only O(k) distance queries. Our algorithm uses an active selection strategy to choose a small set of points that we call landmarks, and considers only the distances between landmarks and other points to produce a clustering. We use our procedure to cluster proteins by sequence similarity. This setting nicely fits our model because we can use a fast sequence database search program to query a sequence against an entire data set. We conduct an empirical study that shows that even though we query a small fraction of the distances between the points, we produce clusterings that are close to a desired clustering given by manual classification.