We present the design and prototype implementation of a scientific visualization language called Zifazah for composing 3D visualizations of diffusion tensor magnetic resonance imaging (DT-MRI or DTI) data. Unlike existing tools allowing flexible customization of data visualizations that are programmer-oriented, we focus on domain scientists as end users in order to enable them to freely compose visualizations of their scientific data set. We analyzed end-user descriptions extracted from interviews with neurologists and physicians conducting clinical practices using DTI about how they would build and use DTI visualizations to collect syntax and semantics for the language design, and have discovered the elements and structure of the proposed language. Zifazah makes use of the initial set of lexical terms and semantics to provide a declarative language in the spirit of intuitive syntax and usage. This work contributes three, among others, main design principles for scientific visualization language design as well as a practice of such language for DTI visualization with Zifazah. First, Zifazah incorporated visual symbolic mapping based on color, size and shape, which is a sub-set of Bertin's taxonomy migrated to scientific visualizations. Second, Zifazah is defined as a spatial language whereby lexical representation of spatial relationship for 3D object visualization and manipulations, which is characteristic of scientific data, can be programmed. Third, built on top of Bertin's semiology, flexible data encoding specifically for scientific visualizations is integrated in our language in order to allow end users to achieve optimal visual composition at their best. Along with sample scripts representative of our language design features, some new DTI visualizations as the running results created by end users using the novel visualization language have also been presented.
Since pioneered the automatic generation of graphic representation @cite_27 , Mackinlay's work has been extended lately into a visual analysis system armed with a set of interface commands and defaults representing the best practices of graphical design @cite_32 , upon which a commercial software Tableau was developed. In his work, the generation of visualizations was automated thanks to the application of a series of design rules and made adaptable to users with a wide range of design expertise via constrained flexibilities by those design rules. With , we also intend to provide an environment in which end users can flexibly build their own visualizations like Tableau. However, instead of targeting visual analysis in the context of two-dimensional (2D) information visualization, primarily aims at end-user visualization making and exploration with 3D scientific data such as DTI. Also, compared to the visual specifications in Tableau like those in its predecessor Polaris @cite_6 , textual programming is the main means for end users to interact with visualizations of interest in . Similar to Polaris in terms of using visual operations to build visualizations, the tool designed in @cite_11 aims to support retrieving DTI fibers instead of querying relational database in Polaris.
@cite_27 @cite_32 @cite_6 @cite_11
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The goal of the research described in this paper is to develop an application-independent presentation tool that automatically designs effective graphical presentations (such as bar charts, scatter plots, and connected graphs) of relational information. Two problems are raised by this goal: The codification of graphic design criteria in a form that can be used by the presentation tool, and the generation of a wide variety of designs so that the presentation tool can accommodate a wide variety of information. The approach described in this paper is based on the view that graphical presentations are sentences of graphical languages. The graphic design issues are codified as expressiveness and effectiveness criteria for graphical languages. Expressiveness criteria determine whether a graphical language can express the desired information. Effectiveness criteria determine whether a graphical language exploits the capabilities of the output medium and the human visual system. A wide variety of designs can be systematically generated by using a composition algebra that composes a small set of primitive graphical languages. Artificial intelligence techniques are used to implement a prototype presentation tool called APT (A Presentation Tool), which is based on the composition algebra and the graphic design criteria. This paper describes Show Me, an integrated set of user interface commands and defaults that incorporate automatic presentation into a commercial visual analysis system called Tableau. A key aspect of Tableau is VizQL, a language for specifying views, which is used by Show Me to extend automatic presentation to the generation of tables of views (commonly called small multiple displays). A key research issue for the commercial application of automatic presentation is the user experience, which must support the flow of visual analysis. User experience has not been the focus of previous research on automatic presentation. The Show Me user experience includes the automatic selection of mark types, a command to add a single field to a view, and a pair of commands to build views for multiple fields. Although the use of these defaults and commands is optional, user interface logs indicate that Show Me is used by commercial users. In the last several years, large multidimensional databases have become common in a variety of applications, such as data warehousing and scientific computing. Analysis and exploration tasks place significant demands on the interfaces to these databases. Because of the size of the data sets, dense graphical representations are more effective for exploration than spreadsheets and charts. Furthermore, because of the exploratory nature of the analysis, it must be possible for the analysts to change visualizations rapidly as they pursue a cycle involving first hypothesis and then experimentation. In this paper, we present Polaris, an interface for exploring large multidimensional databases that extends the well-known pivot table interface. The novel features of Polaris include an interface for constructing visual specifications of table-based graphical displays and the ability to generate a precise set of relational queries from the visual specifications. The visual specifications can be rapidly and incrementally developed, giving the analyst visual feedback as he constructs complex queries and visualizations. Diffusion tensor imaging (DTI) is a magnetic resonance imaging method that can be used to measure local information about the structure of white matter within the human brain. Combining DTI data with the computational methods of MR tractography, neuroscientists can estimate the locations and sizes of nerve bundles (white matter pathways) that course through the human brain. Neuroscientists have used visualization techniques to better understand tractography data, but they often struggle with the abundance and complexity of the pathways. In this paper, we describe a novel set of interaction techniques that make it easier to explore and interpret such pathways. Specifically, our application allows neuroscientists to place and interactively manipulate box or ellipsoid-shaped regions to selectively display pathways that pass through specific anatomical areas. These regions can be used in coordination with a simple and flexible query language which allows for arbitrary combinations of these queries using Boolean logic operators. A representation of the cortical surface is provided for specifying queries of pathways that may be relevant to gray matter structures and for displaying activation information obtained from functional magnetic resonance imaging. By precomputing the pathways and their statistical properties, we obtain the speed necessary for interactive question-and-answer sessions with brain researchers. We survey some questions that researchers have been asking about tractography data and show how our system can be used to answer these questions efficiently.