UNOISE2: improved error correction for Illumina 16S and ITS amplicon sequencing
Amplicon sequencing of tags such as 16S and ITS ribosomal RNA is a popular method for investigating microbial populations. In such experiments, sequence errors caused by PCR and sequencing are difficult to distinguish from true biological variation. I describe UNOISE2, an updated version of the UNOISE algorithm for denoising (error correcting) Illumina amplicon reads and show that it has comparable or better accuracy than DADA2.