The distant shielding effect in trinucleoside diposphates
A comparative study on the proton magnetic resonance of the dinucleoside monophosphates TpT, dApT, TpdA, the trinucleoside diphosphates dApTpT, TpTpdA, and poly T has been made. The purpose of this investigation was to establish whether in a trimer the proton chemical shifts of one terminal residue are influenced by the magnetic anistropy of the other terminal residue. The conformation of the trimers was first studied and shown to the similar to that of the corresponding dimer, except that of the percentage of the lefthanded conformers in the population of the trimers is probably lower than in the population of the dimers. The methylprotons, H‐6, and H‐1′ of the 3′‐terminal T residue in TpTpdA (or the 5′‐terminal T residue in dApTpT) are found to be more upfield than the same protons on the dimer TpT up to a magnitude of about 0.1 ppm. The shielding of these protons of the terminal T(s) in these trimers is even larger than those corresponding protons in the poly(T) at the same condition. From these results, it is concluded that a distant shielding effect is exerted by the 5′‐terminal. A residue (or by the 3′‐terminal A residue) on the other terminal residue in the trimers studied.
Conformation studies of 13 trinucleoside diphosphates by 360 MHz PMR spectroscopy. A bulged base conformation. I. Base protons and H1' protons.
The 360 MHz NMR spectra of the base protons and the H1 protons of thirteen trinucleoside diphosphates have been analyzed. The sequences chosen represent all purine-pyrimidine sequences. The chemical shifts of the base protons give evidence for strong next nearest-neighbor effects in some oligonucleotides. Although increasing chain length usually increases nearest-neighbor base-base stacking, it is not always so. Comparing ApCpG, ApUpG and GpUpG to their component dimers, one finds a decrease in stacking of the center pyrimidine with the purine on either side. The coupling constants J 1'2' also show that these three trimers show less stacking for their terminal residues than expected from their component dimers. We conclude that the sequence Pu-Py-Pu favors a conformation in which the pyrimidine is bulged out and the two purines stack on each other.
THE IRON-ACETOCARMINE METHOD OF FIXING AND STAINING CHROMOSOMES
A short description of this procedure was given in Vol. 55 of the American Naturalist, pp. 573â€”574. The method has now been used almost daily for five years, and certain improvements have suggested themselves. The solution can be prepared by mixing about equal volumes of glacial acetic acid and water. To this is added powdered carmine in excess. The liquid is then â€ ? just brought to boil, cooled, and decanted. To the red solution there are then added a few drops of a solution of ferric hydrate in 50 per cent. acetic acid, to act as a mordant. The amount of iron varies with different objects. Too much produces a precipitate in a short time. The more