Occurrence of Salmonella genomic island 1 (SGI1) in two African Proteus mirabilis strains isolated from diseased chicken flocks.
Two P. mirabilis strains, PmSHR21 and PmSHR38, were collected from chicken flocks in Sharkia Governorate, Egypt in 2016. The two strains showed multidrug-resistance (MDR) phenotypes and were detected to harbour I) floR and sul1 genes conferring resistance to florfenicol and chloramphenicol, and sulfonamides, respectively, II) a ~1.9 kbp class 1 integron containing aadA2-lnuF genes conferring resistance to spectinomycin and streptomycin, and lincosamides, respectively. Interestingly, the two strains were detected to contain SGI1 variant, SGI1-W and inserted between the 3' end of the chromosomal trmE gene and the hipB/hipA toxin/antitoxin homologue. Fingerprinting by ERIC-PCR of the two poultry strains identified in this study and the two human SGI1-carrying P. mirabilis strains described recently in our study showed identical ERIC-pattern between SGI1-W-carrying poultry and human strains, suggesting that they might be clonally related. The detection of SGI1 and its variants in P. mirabilis isolated from humans and chicken flocks in Egypt clarify the geographical and biological spreading through an inter-transmission pathway. To the best of our knowledge, this is the first study detecting SGI1-positive P. mirabilis isolated from chicken flocks in Africa.
First report in Africa of two clinical isolates of Proteus mirabilis carrying Salmonella genomic island (SGI1) variants, SGI1-PmABB and SGI1-W.
Two Proteus mirabilis strains, designated PmTAN59 and PmKAF126, were isolated from two different Egyptian cities in 2014 and 2015, respectively. PmTAN59 was isolated from a sputum swab from a pneumonia patient in Tanta University Teaching Hospital. PmKAF126 was isolated from a patient with a diabetic foot infection in a hospital in the city of Kafr El-Sheikh. The two isolates were identified with bacterial small ribosomal RNA (16S rRNA) gene amplification and sequencing and tested for antimicrobial sensitivity with a Kirby-Bauer disk diffusion assay. The two strains were resistant to amoxicillin/clavulante, ampicillin, cefotaxime, cefoxitin, ceftriaxone, chloramphenicol, ciprofloxacin, colistin, gentamicin, kanamycin, nalidixic acid, spectinomycin, streptomycin, sulfamethoxazole/trimethoprime, and tetracycline, but sensitive to aztreonam, imipenem, and meropenem. Molecular characterization was used to map the entire backbone, including the multiple antibiotic resistance (MDR) region, of Salmonella genomic island 1 (SGI1). Both isolates carried a structure similar to SGI1, with two different MDR regions corresponding to SGI1-PmABB in PmTAN59 and SGI1-W in PmKAF126. SGI1-PmABB carried an integron of ~1.5kb with a two-gene cassette, aacCA5-aadA7, which confers resistance to gentamicin, streptomycin, and spectinomycin, whereas SGI1-W carried an integron of ~1.9kb containing aadA2-lnuF, which confers resistance to spectinomycin, streptomycin, and lincosamides. PmKAF126 carried the entire SGI1 sequence, however PmTAN59 carried a SGI1 structure with a deletion in the region from ORF S005 to ORF S009 and accompanied by insertion of IS1359 (1258bp). Furthermore, PmTAN59 carried class 2 integron of ~2.2kb containing dfrA1-sat2-aadA1. An ERIC-PCR analysis detected no clonal relationship between the two strains. Molecular screening for other antimicrobial resistance genes and a plasmid analysis indicated that PmTAN59 carried an IncFIB plasmid type. This strain also carried blaTEM-1 and the plasmid-mediated quinolone-resistance gene qnrA1. However, PmKAF126 carried no plasmids and no resistance gene other than that contained in the MDR region of SGI1 and floR gene conferring resistance to florfenicol. To the best of our knowledge, this is the first report of an SGI1-positive P. mirabilis strain in Egypt or on the entire African continent.
Germination ecology of Central Asian Stipa spp: differences among species, seed provenances, and the importance of field studies
Stipa-species are wide-spread in Central Asia, but sexual reproduction in the dry steppes is rare. To facilitate conservation and restoration of these important rangelands, we studied germination characteristics of three common Mongolian Stipa-species under field- and lab conditions. Seeds of Stipa krylovii, Stipa gobica and Stipa glareosa were sown at the study site in Southern Mongolia over two consecutive years during which period tests were carried out to ascertain whether competition or herbivory are the main constraints of seedling establishment. In addition, we tested germination and seed viability in the laboratory under two different temperature regimes (20/10°C and 8/4°C), as well as the effect of cold-stratification. The lab experiments also included S. krylovii seeds originating from three climatically different provenances. None of the three Stipa-species seedlings emerged during the first 2 years of the field study. However, after an unusually intense rain event in the third year, 3% of S. krylovii, 0.6% of S. glareosa and 0.1% of S. gobica seeds germinated in the study plots. The factors ‘sowing-year’ and ‘vegetation’ significantly affected seedling emergence, whereas grazing had no effect at all. Under laboratory conditions a high percentage of viable seeds of S. gobica and S. glareosa germinated at both incubation temperatures, and cold-stratification had no effect on germination or viability. Germination of S. krylovii seeds required warmer temperatures and cold-stratification had a positive effect. Such evidence for dormancy was more pronounced in seeds from the moister, northern provenances. Germination of Stipa-species in the field is rare and only possible under exceptionally moist conditions. Conservation should thus concentrate on steppe conservation rather than on restoration. Where artificial reseeding is necessary, differences among species and also among different seed provenances should be taken into account.