13344452
Context query in information retrieval
There is an important query requirement missing for search engines. With the wide variation of domain knowledge and user interest, a user would like to retrieve documents in which one query term is discussed in the context of another. Based on existing query mechanisms, what can be specified at most is the co-occurrence of multiple terms in a query. This is insufficient because the co-occurrence of two terms does not necessarily mean that one is discussed in the context of the other. In this paper we propose the context query for Web searching. A new query operator, called the 'in' operator, is used to specify context inclusion between two terms. Heuristic rules to identify context inclusion are suggested and implementation of the 'in' operator in search engines is proposed. Results show that both the precision and ranking relevance of Web searching are improved significantly.
13552447
Reverse mapping of referral links from storage hierarchy for Web documents
Due to the lack of back-pointers, information about the referral parent(s) of a given Web page is not usually available to Web surfers. This significantly reduces the effectiveness of Web surfing and information discovery. We propose a mechanism to locate the referral parent(s) for a given fragment of a Web document (in terms of an URL address) from the client side. The basic idea is to explore the hierarchical hyperlink structure of a Web document fragment from its storage path directory information that is embedded in its URL. Two mechanisms were proposed: exhaustibility first search (EFS) and generalization first search (GFS). Results showed that through direct mapping of the storage hierarchy path to the URL address and then performing reverse tracing along the hyperlink structure, the chance of discovering a referral parent ranged from 41% to 51%. Compared to EFS, GFS was found to reduce the average search space from 26 pages to 4 pages.
18215853
Study for fusion of different sources to determine relevance
The relevance of a Web document could be measured not only by its text content, but also by some other factors such as the link connectivity and usage patterns. In previous data fusion researches, the text is the only source to determine the relevance, and only the different runs (e.g. by different retrieval models, different query or document representations) on this same source are combined. It is the purpose of this paper to investigate whether the different sources can be combined to determine the relevance with a better accuracy than any single source. We conducted a preliminary experiment to test its feasibility and effectiveness and a positive result was obtained.
209398610
Beyond the traditional query operators.
10076076
Quantitative Modeling for Web Objects' Cacheability
In this paper, we propose a mathematical model, called the E-Cacheability Index, to quantify and compare the effectiveness of caching web objects on Internet. Unlike previous related work on web object cacheability, our study is based on a comprehensive study of all object attributes related to the HTTP protocol transfer, content reuse, freshness re-validation as well as the inter-relationship/dependency among these attributes in the final caching decision. This model is important because it not only estimates the cacheability effectiveness of web content, but also provides hints on web caching optimization.
9546816
A Framework of HTML Content Selection and Adaptive Delivery
In this paper, we propose a content selection and adaptive delivery framework to adapt content delivery to different client capabilities and preferences. The framework provides language support to content publishers with XML-based markup language to describe the content and control the transformation and delivery process. Automatic content classification and selective delivery based on match between content class and user capability or preference are also implemented. Thus, when content descriptions from server are not available, adaptive content delivery is still possible. The framework is generic and scalable. Performance studies on content classification and selection model show that it is effective in saving network resources and improving clients’ access experiences.
807817
A spectral method to separate disconnected and nearly-disconnected web graph components
Separation of connected components from a graph with disconnected graph components mostly use breadth-first search (BFS) or depth-first search (DFS) graph algorithms. Here we propose a new algebraic method to separate disconnected and nearly-disconnected components. This method is based on spectral graph partitioning, following a key observation that disconnected components will show up, after properly sorted, as step-function like curve in the lowest eigenvectors of the Laplacian matrix of the graph. Following an perturbative analysis framework, we systematically analyzed the graph structures, first on the disconnected subgraph case, and second on the effects of adding edges sparsely connecting different subgraphs as a perturbation. Several new results are derived, providing insights to spectral methods and related clustering objective function. Examples are given illustrating the concepts and results our methods. Comparing to the standard graph algorithms, this method has the same O(‖E ‖ + ‖V‖log(‖V‖)) complexity, but is easier to implement (using readily available eigensolvers). Further more the method can easily identify articulation points and bridges on nearly-disconnected graphs. Segmentation of a real example of Web graph for query amazon is given. We found that each disconnected or nearly-disconnected components forms a cluster on a clear topic.
8380855
High Performance Computations for Large Scale Simulations of Subsurface Multiphase Fluid and Heat Flow
TOUGH2 is a widely used reservoir simulator for solving subsurface flow related problems such as nuclear waste geologic isolation, environmental remediation of soil and groundwater contamination, and geothermal reservoir engineering. It solves a set of coupled mass and energy balance equations using a finite volume method. This contribution presents the design and analysis of a parallel version of TOUGH2. The parallel implementation first partitions the unstructured computational domain. For each time step, a set of coupled non-linear equations is solved with Newton iteration. In each Newton step, a Jacobian matrix is calculated and an ill-conditioned non-symmetric linear system is solved using a preconditioned iterative solver. Communication is required for convergence tests and data exchange across partitioning borders. Parallel performance results on Cray T3E-900 are presented for two real application problems arising in the Yucca Mountain nuclear waste site study. The execution time is reduced from 7504 seconds on two processors to 126 seconds on 128 processors for a 2D problem involving 52,752 equations. For a larger 3D problem with 293,928 equations the time decreases from 10,055 seconds on 16 processors to 329 seconds on 512 processors.
669643
Multi-class protein fold recognition using support vector machines and neural networks
MOTIVATION
Protein fold recognition is an important approach to structure discovery without relying on sequence similarity. We study this approach with new multi-class classification methods and examined many issues important for a practical recognition system.


RESULTS
Most current discriminative methods for protein fold prediction use the one-against-others method, which has the well-known 'False Positives' problem. We investigated two new methods: the unique one-against-others and the all-against-all methods. Both improve prediction accuracy by 14-110% on a dataset containing 27 SCOP folds. We used the Support Vector Machine (SVM) and the Neural Network (NN) learning methods as base classifiers. SVMs converges fast and leads to high accuracy. When scores of multiple parameter datasets are combined, majority voting reduces noise and increases recognition accuracy. We examined many issues involved with large number of classes, including dependencies of prediction accuracy on the number of folds and on the number of representatives in a fold. Overall, recognition systems achieve 56% fold prediction accuracy on a protein test dataset, where most of the proteins have below 25% sequence identity with the proteins used in training.
270633
Web document clustering using hyperlink structures
WEB DOCUMENT CLUSTERING USING HYPERLINK STRUCTURES XIAOFENG HE y , HONGYUAN ZHA , CHRIS H.Q. DING y AND HORST D. SIMON y Abstract. With the exponential growth of information on the World Wide Web, there is great demand for developing e cient and e ective methods for organizing and retrieving the information available. Document clustering plays an important role in information retrieval and taxonomy man- agement for the World Wide Web and remains an interesting and challenging problem in the eld of web computing. In this paper we consider document clustering methods exploring textual infor- mation, hyperlink structure and co-citation relations. In particular, we apply the normalized-cut clustering method developed in computer vision to the task of hyperdocument clustering. We also explore some theoretical connections of the normalized-cut method to K-means method. We then experiment with normalized-cut method in the context of clustering query result sets for web search engines. Keywords. World Wide Web, graph partitioning, cheeger constant, clustering method, K-means method, normalized cut method, eigenvalue decomposition, power method. 1. Introduction. Currently the World Wide Web contains billions of documents and it is still growing rapidly. Finding the relevant documents to satisfy a user's infor- mation need is a very important and challenging task. Many commercial search en- gines have been developed and used by millions of people all over the world. However, the relevancy of documents returned in search engine result sets is still lacking, and further research and development is needed to really make search engines a ubiquitous information-seeking tool. The World Wide Web has a rich structure: it contains both textual web documents and the hyperlinks that connect them. The web documents and hyperlinks between them form a directed graph in which the web documents can be viewed as vertices and the hyperlinks as directed edges. Algorithms have been de- veloped utilizing this directed graph to extract information contained in a collection of hyperlinked web documents. Kleinberg proposed HITS algorithm based purely on hyperlink information to retrieve the most relevant information: authority and hub documents for a user query 20]. However, if the hypertext collection consists of sev- eral topics, authority and hub documents may only cover the most popular topics and leave out the less popular ones. One way to remedy this situation is to rst partition the hypertext collection into topical groups, and present the search results as a list of topics to the user. This leads to the need to cluster web documents based on both the textual and hyperlink information. There exists a large literature on clustering methods and algorithms 13, 19]. Gen- erally speaking, the purpose of cluster analysis is to organize the data into meaningful groups: the data objects in the same group are highly similar and those in di erent groups are dissimilar. Judging the e ectiveness of a clustering algorithm is di cult and usually application-dependent. In this paper, we apply a similarity-based cluster- ing method to the problem of clustering web documents. It utilizes a graph-theoretic criterion called normalized cut which has its root in the study of graph isoperimetric Department of Computer Science and Engineering, The Pennsylvania State University, Uni- versity Park, PA 16802, f xhe,zha g @cse.psu.edu . This work was supported in part by NSF grant CCR-9901986. y NERSC Division, Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, f xfhe,chqding,hdsimon g @lbl.gov . Supported by Department of Energy through an LBL LDRD fund.
53222834
A ghost cell expansion method for reducing communications in solving PDE problems