7938529
Efficient mining of frequent subgraphs in the presence of isomorphism
Frequent subgraph mining is an active research topic in the data mining community. A graph is a general model to represent data and has been used in many domains like cheminformatics and bioinformatics. Mining patterns from graph databases is challenging since graph related operations, such as subgraph testing, generally have higher time complexity than the corresponding operations on itemsets, sequences, and trees, which have been studied extensively. We propose a novel frequent subgraph mining algorithm: FFSM, which employs a vertical search scheme within an algebraic graph framework we have developed to reduce the number of redundant candidates proposed. Our empirical study on synthetic and real datasets demonstrates that FFSM achieves a substantial performance gain over the current start-of-the-art subgraph mining algorithm gSpan.
14969897
Dynamic adaptive file management in a local area network
In light of advances in processor and networking technology, especially the emergence of network attached disks, the traditional client-server architecture of file systems has become suboptimal for many computation/data intensive applications. We introduce a revised architecture for file management employing network attached storage: the dynamic file server environment (Dynamo). Dynamo introduces two main architectural innovations: to provide high scalability, the file management functions are mainly performed cooperatively by the clients in the system. Furthermore, data is transferred directly to the client's cache from network-attached disks, thus avoiding copies from a disk to the server buffer and then over the network to the client. Secondly, Dynamo uses a cooperative cache management which employs a decentralized lottery-based page replacement strategy. We show via performance benchmarks run on the Dynamo system and simulation results how this architecture increases the system's adaptability, scalability and cost performance.
7408751
Quantitative Association Analysis Using Tree Hierarchies
Association analysis arises in many important applications such as bioinformatics and business intelligence. Given a large collection of measurements over a set of samples, association analysis aims to find dependencies of target variables to subsets of measurements. Most previous algorithms adopt a two-stage approach; they first group samples based on the similarity in the subset of measurements, and then they examine the association between these groups and the specified target variables without considering the inter-group similarities or alternative groupings. This can lead to cases where the strength of association depends significantly on arbitrary clustering choices. In this paper, we propose a tree-based method for quantitative association analysis. Tree hierarchies derived from sample similarities represent many possible sample groupings. They also provide a natural way to incorporate domain knowledge such as ontologies and to identify and remove outliers. Given a tree hierarchy, our association analysis evaluates all possible groupings and selects the one with strongest association to the target variable. We introduce an efficient algorithm, TreeQA, to systematically explore the search-space of all possible groupings in a set of input trees, with integrated permutation tests. Experimental results show that TreeQA is able to handlelarge-scale association analysis very efficiently and is more effective and robust in association analysis than previous methods.
2548187
Mining asynchronous periodic patterns in time series data
Periodicy detection in time series data is a challenging problem of great importance in many applications. Most previous work focused on mining synchronous periodic patterns and did not recognize the misaligned presence of a pattern due to the intervention of random noise. In this paper, we propose a more flexible model of asynchronous periodic pattern that may be present only within a subsequence and whose occurrences may be shifted due to disturbance. Two parameters min rep and max dis are employed to specify the minimum number of repetitions that is required within each segment of nondisrupted pattern occurrences and the maximum allowed disturbance between any two successive valid segments. Upon satisfying these two requirements, the longest valid subsequence of a pattern is returned. A two-phase algorithm is devised to first generate potential periods by distance-based pruning followed by an iterative procedure to derive and validate candidate patterns and locate the longest valid subsequence. We also show that this algorithm cannot only provide linear time complexity with respect to the length of the sequence but also achieve space
5788516
Efficient genome ancestry inference in complex pedigrees with inbreeding
Motivation: High-density SNP data of model animal resources provides opportunities for fine-resolution genetic variation studies. These genetic resources are generated through a variety of breeding schemes that involve multiple generations of matings derived from a set of founder animals. In this article, we investigate the problem of inferring the most probable ancestry of resulting genotypes, given a set of founder genotypes. Due to computational difficulty, existing methods either handle only small pedigree data or disregard the pedigree structure. However, large pedigrees of model animal resources often contain repetitive substructures that can be utilized in accelerating computation. Results: We present an accurate and efficient method that can accept complex pedigrees with inbreeding in inferring genome ancestry. Inbreeding is a commonly used process in generating genetically diverse and reproducible animals. It is often carried out for many generations and can account for most of the computational complexity in real-world model animal pedigrees. Our method builds a hidden Markov model that derives the ancestry probabilities through inbreeding process without explicit modeling in every generation. The ancestry inference is accurate and fast, independent of the number of generations, for model animal resources such as the Collaborative Cross (CC). Experiments on both simulated and real CC data demonstrate that our method offers comparable accuracy to those methods that build an explicit model of the entire pedigree, but much better scalability with respect to the pedigree size. Contact: weiwang@cs.unc.edu
62615149
Mining Asynchronous Periodic Patterns in Time Series Data
Periodicy detection in time series data is a challenging problem of great importance in many applications. Most previous work focused on mining synchronous periodic patterns and did not recognize the misaligned presence of a pattern due to the intervention of random noise. In this paper, we propose a more flexible model of asynchronous periodic pattern that may be present only within a subsequence and whose occurrences may be shifted due to disturbance. Two parameters min/spl I.bar/rep and max/spl I.bar/dis are employed to specify the minimum number of repetitions that is required within each segment of nondisrupted pattern occurrences and the maximum allowed disturbance between any two successive valid segments. Upon satisfying these two requirements, the longest valid subsequence of a pattern is returned. A two-phase algorithm is devised to first generate potential periods by distance-based pruning followed by an iterative procedure to derive and validate candidate patterns and locate the longest valid subsequence. We also show that this algorithm cannot only provide linear time complexity with respect to the length of the sequence but also achieve space efficiency.
24206437
Chopper: Efficient algorithm for tree mining
With the development of Internet, frequent pattern mining has been extended to more complex patterns like tree mining and graph mining. Such applications arise in complex domains like bioinformatics, web mining, etc. In this paper, we present a novel algorithm, namedChopper, to discover frequent subtrees from ordered labeled trees. An extensive performance study shows that the newly developed algorithm outperformsTreeMiner V, one of the fastest methods proposed previously, in mining large databases. At the end of this paper, the potential improvement ofChopper is mentioned.
15939515
GraphMiner: a structural pattern-mining system for large disk-based graph databases and its applications
Mining frequent structural patterns from graph databases is an important research problem with broad applications. Recently, we developed an effective index structure, ADI, and efficient algorithms for mining frequent patterns from large, disk-based graph databases [5], as well as constraint-based mining techniques. The techniques have been integrated into a research prototype system--- GraphMiner. In this paper, we describe a demo of GraphMiner which showcases the technical details of the index structure and the mining algorithms including their efficient implementation, the mining performance and the comparison with some state-of-the-art methods, the constraint-based graph-pattern mining techniques and the procedure of constrained graph mining, as well as mining real data sets in novel applications.
9921122
Probabilistic Skyline Operator over Sliding Windows
Skyline computation has many applications including multi-criteria decision making. In this paper, we study the problem of efficient processing of continuous skyline queries over sliding windows on uncertain data elements regarding given probability thresholds. We first characterize what kind of elements we need to keep in our query computation. Then we show the size of dynamically maintained candidate set and the size of skyline. We develop novel, efficient techniques to process a continuous, probabilistic skyline query. Finally, we extend our techniques to the applications where multiple probability thresholds are given or we want to retrieve "top-k" skyline data objects. Our extensive experiments demonstrate that the proposed techniques are very efficient and handle a high-speed data stream in real time.
19122402
Moduli selection in RNS for efficient VLSI implementation
In this paper, we carry out a study on an important issue concerning the use of residue numbers in the design of digital systems, namely, the moduli selection. Based on a new formulation of the Chinese remainder theorem and the efficient residue-to-binary (R/B) converters designed therefrom, we propose a guideline for the selection of the low-cost moduli sets for different dynamic ranges. These sets consist of the low-cost moduli of the form 2/sup n/, ( 2/sup n/-1) or (2/sup n/ + 1), which can offer simplified modulo adders and multipliers. It is shown that for medium dynamic ranges (less than 22 bits), the three-moduli set {2/sup n/,2/sup n/ + 1,2/sup n/ - 1} is the most efficient one in terms of the design of a complete RNS system. On the other hand, for large dynamic ranges (equal to or larger than 22 bits), the general-moduli set in the form (2/sup n/, 2/sup n/ + 1,2/sup n/ - 1,2/sup n/ /spl plusmn/1,...,2/sup n/, /spl plusmn/1), with a length greater than three, is the most efficient one. These results provide the possibility of a wide range of applications of the residue number system in the design of DSP, telecommunication and cryptography systems.
8292023
Fuzzy Multi-Dimensional Search in the Wayfinder File System
With the explosion in the amount of semi-structured data users access and store, there is a need for complex search tools to retrieve often very heterogeneous data in a simple and efficient way. Existing tools usually index text content, allowing for some IR-style ranking on the textual part of the query, but only consider structure (e.g., file directory) and metadata (e.g., date, file type) as filtering conditions. We propose a novel multidimensional querying approach to semi-structured data searches in personal information systems by allowing users to provide fuzzy structure and metadata conditions in addition to traditional keyword conditions. The provided query interface is more comprehensive than content-only searches as it considers three query dimensions (content, structure, metadata) in the search. We have implemented our proposed approach in the Wayfinder file system. In this demo, we will use this implementation to both present an overview of the unified scoring framework underlying the fuzzy multi-dimensional querying approach and demonstrate its potential in improving search results.