1519174
Split-Order Distance for Clustering and Classification Hierarchies
Clustering and classification hierarchies are organizational structures of a set of objects. Multiple hierarchies may be derived over the same set of objects, which makes distance computation between hierarchies an important task. In this paper, we model the classification and clustering hierarchies as rooted, leaf-labeled, unordered trees. We propose a novel distance metric Split-Order distance to evaluate the organizational structure difference between two hierarchies over the same set of leaf objects. Split-Order distance reflects the order in which subsets of the tree leaves are differentiated from each other and can be used to explain the relationships between the leaf objects. We also propose an efficient algorithm for computing Split-Order distance between two trees in O (n 2 d 4) time, where n is the number of leaves, and d is the maximum number of children of any node. Our experiments on both real and synthetic data demonstrate the efficiency and effectiveness of our algorithm.
14969897
Dynamic adaptive file management in a local area network
In light of advances in processor and networking technology, especially the emergence of network attached disks, the traditional client-server architecture of file systems has become suboptimal for many computation/data intensive applications. We introduce a revised architecture for file management employing network attached storage: the dynamic file server environment (Dynamo). Dynamo introduces two main architectural innovations: to provide high scalability, the file management functions are mainly performed cooperatively by the clients in the system. Furthermore, data is transferred directly to the client's cache from network-attached disks, thus avoiding copies from a disk to the server buffer and then over the network to the client. Secondly, Dynamo uses a cooperative cache management which employs a decentralized lottery-based page replacement strategy. We show via performance benchmarks run on the Dynamo system and simulation results how this architecture increases the system's adaptability, scalability and cost performance.
62615149
Mining Asynchronous Periodic Patterns in Time Series Data
Periodicy detection in time series data is a challenging problem of great importance in many applications. Most previous work focused on mining synchronous periodic patterns and did not recognize the misaligned presence of a pattern due to the intervention of random noise. In this paper, we propose a more flexible model of asynchronous periodic pattern that may be present only within a subsequence and whose occurrences may be shifted due to disturbance. Two parameters min/spl I.bar/rep and max/spl I.bar/dis are employed to specify the minimum number of repetitions that is required within each segment of nondisrupted pattern occurrences and the maximum allowed disturbance between any two successive valid segments. Upon satisfying these two requirements, the longest valid subsequence of a pattern is returned. A two-phase algorithm is devised to first generate potential periods by distance-based pruning followed by an iterative procedure to derive and validate candidate patterns and locate the longest valid subsequence. We also show that this algorithm cannot only provide linear time complexity with respect to the length of the sequence but also achieve space efficiency.
2548187
Mining asynchronous periodic patterns in time series data
Periodicy detection in time series data is a challenging problem of great importance in many applications. Most previous work focused on mining synchronous periodic patterns and did not recognize the misaligned presence of a pattern due to the intervention of random noise. In this paper, we propose a more flexible model of asynchronous periodic pattern that may be present only within a subsequence and whose occurrences may be shifted due to disturbance. Two parameters min rep and max dis are employed to specify the minimum number of repetitions that is required within each segment of nondisrupted pattern occurrences and the maximum allowed disturbance between any two successive valid segments. Upon satisfying these two requirements, the longest valid subsequence of a pattern is returned. A two-phase algorithm is devised to first generate potential periods by distance-based pruning followed by an iterative procedure to derive and validate candidate patterns and locate the longest valid subsequence. We also show that this algorithm cannot only provide linear time complexity with respect to the length of the sequence but also achieve space
7408751
Quantitative Association Analysis Using Tree Hierarchies
Association analysis arises in many important applications such as bioinformatics and business intelligence. Given a large collection of measurements over a set of samples, association analysis aims to find dependencies of target variables to subsets of measurements. Most previous algorithms adopt a two-stage approach; they first group samples based on the similarity in the subset of measurements, and then they examine the association between these groups and the specified target variables without considering the inter-group similarities or alternative groupings. This can lead to cases where the strength of association depends significantly on arbitrary clustering choices. In this paper, we propose a tree-based method for quantitative association analysis. Tree hierarchies derived from sample similarities represent many possible sample groupings. They also provide a natural way to incorporate domain knowledge such as ontologies and to identify and remove outliers. Given a tree hierarchy, our association analysis evaluates all possible groupings and selects the one with strongest association to the target variable. We introduce an efficient algorithm, TreeQA, to systematically explore the search-space of all possible groupings in a set of input trees, with integrated permutation tests. Experimental results show that TreeQA is able to handlelarge-scale association analysis very efficiently and is more effective and robust in association analysis than previous methods.
5788516
Efficient genome ancestry inference in complex pedigrees with inbreeding
Motivation: High-density SNP data of model animal resources provides opportunities for fine-resolution genetic variation studies. These genetic resources are generated through a variety of breeding schemes that involve multiple generations of matings derived from a set of founder animals. In this article, we investigate the problem of inferring the most probable ancestry of resulting genotypes, given a set of founder genotypes. Due to computational difficulty, existing methods either handle only small pedigree data or disregard the pedigree structure. However, large pedigrees of model animal resources often contain repetitive substructures that can be utilized in accelerating computation. Results: We present an accurate and efficient method that can accept complex pedigrees with inbreeding in inferring genome ancestry. Inbreeding is a commonly used process in generating genetically diverse and reproducible animals. It is often carried out for many generations and can account for most of the computational complexity in real-world model animal pedigrees. Our method builds a hidden Markov model that derives the ancestry probabilities through inbreeding process without explicit modeling in every generation. The ancestry inference is accurate and fast, independent of the number of generations, for model animal resources such as the Collaborative Cross (CC). Experiments on both simulated and real CC data demonstrate that our method offers comparable accuracy to those methods that build an explicit model of the entire pedigree, but much better scalability with respect to the pedigree size. Contact: weiwang@cs.unc.edu
9910247
Image Segmentation That Optimizes Global Homogeneity in a Variational Framework
A two-phase segmentation mechanism is described that allows a global homogeneity-related measure to be optimized in a level-set formulation. The mechanism has uniform treatment toward texture, gray level, and color boundaries. Intensities or colors of the image are first coarsely quantized into a number of classes. Then a class map is formed by having each pixel labeled with the class identity its gray or color level is associated with. With this class map, for any segmented region, it can be determined which pixels inside the region belong to which classes, and it can even be calculated how spread-out each of such classes is inside the region. The average spread-size of the classes in the region, in comparison with the size of the region, then constitutes a good measure in evaluating how homogeneous the region is. With the measure, the segmentation problem can be formulated as the optimization of the average homogeneity of the segmented regions. This work contributes chiefly by expressing the above optimization functional in such a way that allows it to be encoded in a variational formulation and that the solution can be reached by the deformation of an active contour. In addition, to solve the problem of multiple optima, this work incorporates an additional geodesic term into the functional of the optimization to maintain the active contour's mobility at even adverse condition of the deformation process. Experimental results on synthetic and real images are presented to demonstrate the performance of the mechanism.
2266606
Space-efficient Relative Error Order Sketch over Data Streams
We consider the problem of continuously maintaining order sketches over data streams with a relative rank error guarantee ∊. Novel space-efficient and one-scan randomised techniques are developed. Our first randomised algorithm can guarantee such a relative error precision ∊ with confidence 1 - \delta using O( 1\_ \in \frac{1} {2}2 log 1d log ∊^2N) space, where N is the number of data elements seen so far in a data stream. Then, a new one-scan space compression technique is developed. Combined with the first randomised algorithm, the one-scan space compression technique yields another one-scan randomised algorithm that guarantees the space requirement is O( 1\frac{1} { \in } log(1\frac{1}{ \in } log 1\begin{gathered} \frac{1}{\delta } \hfill \\ \hfill \\ \end{gathered} )\frac{{\log ^{2 + \alpha } \in N}} {{1 - 1/2^\alpha }} (for\alpha \gt 0) on average while the worst case space remains O( \frac{1}{{ \in ^2 }}\log \frac{1} {\delta }\log \in ^2 N). These results are immediately applicable to approximately computing quantiles over data streams with a relative error guarantee \in and significantly improve the previous best space bound O( \frac{1} {{ \in ^3 }}\log \frac{1}{\delta }\log N). Our extensive experiment results demonstrate that both techniques can support an on-line computation against high speed data streams.
1655622
Ed-Join: an efficient algorithm for similarity joins with edit distance constraints
There has been considerable interest in similarity join in the research community recently. Similarity join is a fundamental operation in many application areas, such as data integration and cleaning, bioinformatics, and pattern recognition. We focus on efficient algorithms for similarity join with edit distance constraints. Existing approaches are mainly based on converting the edit distance constraint to a weaker constraint on the number of matching q-grams between pair of strings. 
 
In this paper, we propose the novel perspective of investigating mismatching q-grams. Technically, we derive two new edit distance lower bounds by analyzing the locations and contents of mismatching q-grams. A new algorithm, Ed-Join, is proposed that exploits the new mismatch-based filtering methods; it achieves substantial reduction of the candidate sizes and hence saves computation time. We demonstrate experimentally that the new algorithm outperforms alternative methods on large-scale real datasets under a wide range of parameter settings.
15381526
A general framework for adaptive and online detection of web attacks
Detection of web attacks is an important issue in current defense-in-depth security framework. In this paper, we propose a novel general framework for adaptive and online detection of web attacks. The general framework can be based on any online clustering methods. A detection model based on the framework is able to learn online and deal with "concept drift" in web audit data streams. Str-DBSCAN that we extended DBSCAN to streaming data as well as StrAP are both used to validate the framework. The detection model based on the framework automatically labels the web audit data and adapts to normal behavior changes while identifies attacks through dynamical clustering of the streaming data. A very large size of real HTTP Log data collected in our institute is used to validate the framework and the model. The preliminary testing results demonstrated its effectiveness.
5116928
Multi-guarded safe zone: An effective technique to monitor moving circular range queries
Given a positive value r, a circular range query returns the objects that lie within the distance r of the query location. In this paper, we study the circular range queries that continuously change their locations. We present an efficient and effective technique to monitor such moving range queries by utilising the concept of a safe zone. The safe zone of a query is the area with a property that while the query remains inside it, the results of the query remain unchanged. Hence, the query does not need to be re-evaluated unless it leaves the safe zone. The shape of the safe zone is defined by the so-called guard objects. The cost of checking whether a query lies in the safe zone takes k distance computations, where k is the number of the guard objects. Our contributions are as follows. 1) We propose a technique based on powerful pruning rules and a unique access order which efficiently computes the safe zone and minimizes the I/O cost. 2) To show the effectiveness of the safe zone, we theoretically evaluate the probability that a query leaves the safe zone within one time unit and the expected distance a query moves before it leaves the safe zone. Additionally, for the queries that have diameter of the safe zone less than its expected value multiplied by a constant, we also give an upper bound on the expected number of guard objects. This upper bound turns out to be a constant, that is, it does not depend either on the radius r of the query or the density of the objects. The theoretical analysis is verified by extensive experiments. 3) Our thorough experimental study demonstrates that our proposed approach is close to optimal and is an order of magnitude faster than a naïve algorithm.