20301430
A Three-Step Approach to Detect and Remove Grid Lines in Well-Logging Digitization
15266073
Improving ICP with easy implementation for free-form surface matching
Automatic range image registration and matching is an attractive but unresolved problem in both the machine vision and pattern recognition literature. Since automatic range image registration and matching is inherently a very difficult problem, the algorithms developed are becoming more and more complicated. In this paper, we propose a novel practical algorithm for automatic free-form surface matching. This method directly manipulates the possible point matches established by the traditional ICP criterion based on both the collinearity and closeness constraints without any feature extraction, image pre-processing, or motion estimation from outliers corrupted data. A comparative study based on a large number of real range images has shown the accuracy and robustness of the novel algorithm.
10845590
Developing structural constraints for accurate registration of overlapping range images
Abstract Automatic image registration is an attractive and unresolved problem in the machine vision literature. This paper presents two novel structural constraints, namely proximity and closeness constraints, that improve both the accuracy and robustness of an existing motion consistency based algorithm (GICP) for automatic image registration. It also defines the conditions when such constraints are fired at specific points of the registration of two overlapping range images. The proximity constraint says that neighbouring points should be neighbouring before and after a rigid motion. The closeness constraint implements a local closest point search from the second image to the first image. While the GICP algorithm uses an exhaustive search for the closest points, in this paper, we employ the optimised k–d tree data structure to accelerate the closest point search. A large number of experiments based on real range images demonstrate that the combination of rigid motion constraints with these novel proximity and closeness constraints leads to a more accurate and robust evaluation of possible correspondences leading, in turn, to more accurate, robust and efficient automatic image registration results.
9293300
Automatic registration of overlapping 3D point clouds using closest points
Abstract While the SoftAssign algorithm imposes a two-way constraint embedded into the deterministic annealing scheme and the EMICP algorithm imposes a one-way constraint, they represent the state of the art technique for the automatic registration of overlapping free form shapes. They both have a time complexity of O ( n 2 ). While the former has a space complexity also of O ( n 2 ), the latter has a space complexity of O ( n ). The heavy demand for computation and storage memory renders either the SoftAssign or EMICP algorithm to hardly operate on whole shapes with thousands of points. In this case, they often have to reduce the number of points to an order of 100s on the free form shapes to be registered. This paper proposes using closest points in conjunction with either the one-way or two-way constraint for the automatic registration of overlapping 3D point clouds and thus, combining the accuracy of both the SoftAssign and EMICP algorithms with the efficiency of the traditional ICP algorithm. A comparative study based on both synthetic data and real images has shown that the proposed algorithm does not significantly sacrifice accuracy and stability of either the SoftAssign or EMICP algorithm, but gains remarkable efficiency of the traditional ICP algorithm for the automatic registration of overlapping 3D point clouds. Since, the proposed algorithm is of general use and has an advantage of easy implementation, it is likely to become in the future a benchmark for the automatic registration of overlapping 3D point clouds.
14532857
Projecting registration error for accurate registration of overlapping range images
Abstract In this paper, we propose a novel algorithm for the automatic registration of two overlapping range images. Since it is relatively difficult to compare the registration errors of different point matches, we project them onto a virtual image plane for more accurate comparison using the classical pin-hole perspective projection camera model. While the traditional ICP algorithm is more interested in the points in the second image close to the sphere centred at the transformed point, the novel algorithm is more interested in the points in the second image as collinear as possible to the transformed point. The novel algorithm then extracts useful information from both the registration error and projected error histograms for the elimination of false matches without any feature extraction, image segmentation or the requirement of motion estimation from outliers corrupted data and, thus, has an advantage of easy implementation. A comparative study based on real images captured under typical imaging conditions has shown that the novel algorithm produces good registration results.
18353926
Inverse validation for accurate range image registration with structured data
Automatic range image registration is a fundamental yet extremely difficult problem in machine vision. In this paper, we extend a promising registration algorithm, the geometric iterative closest point (GICP), for structured image data. The extended algorithm is based on a relaxation method combining the motion estimation results from the possible correspondences established by the GICP algorithm and those that are further evaluated by an inverse validation procedure. A comparative study based on real images has shown that the extended algorithm is more accurate and robust than the original algorithm.
6732585
Systematic Derivation of Incremental Programs
A systematic approach is given for deriving incremental programs from non-incremental programs written in a standard functional programming language. We exploit a number of program analysis and transformation techniques and domain-specific knowledge, centered around effective utilization of caching, in order to provide a degree of incrementality not otherwise achievable by a generic incremental evaluator.
5651676
Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
Protein fold recognition is an important step towards understanding protein three-dimensional structures and their functions. A conditional graphical model, i.e. segmentation conditional random fields (SCRFs), is proposed to solve the problem. In contrast to traditional graphical models such as hidden markov model (HMM), SCRFs follow a discriminative approach. It has the flexibility to include overlapping or long-range interaction features over the whole sequence, as well as global optimally solutions for the parameters. On the other hand, the segmentation setting in SCRFs makes its graphical structures intuitively similar to the protein 3-D structures and more importantly, provides a framework to model the long-range interactions directly. 
 
Our model is applied to predict the parallel β-helix fold, an important fold in bacterial infection of plants and binding of antigens. The cross-family validation shows that SCRFs not only can score all known β-helices higher than non β-helices in Protein Data Bank, but also demonstrate more success in locating each rung in the known β-helix proteins than BetaWrap, a state-of-the-art algorithm for predicting β-helix fold, and HMMER, a general motif detection algorithm based on HMM. Applying our prediction model to Uniprot database, we hypothesize previously unknown β-helices.
1813681
The interaction of representations and planning objectives for decision-theoretic planning tasks
This article studies decision-theoretic planning or reinforcement learning in the presence of traps such as steep slopes for outdoor robots or staircases for indoor robots. In this case, achieving the goal from the start is often the primary objective while minimizing the travel time is only of secondary importance. This article studies how this planning objective interacts with possible representations of the planning tasks, namely whether to use a discount factor that is one or smaller than one and whether to use the action-penalty or the goal-reward representation. It is shown that the action-penalty representation without discounting guarantees that the plan that maximizes the expected reward also achieves the goal from the start (provided that this is possible) but neither the action-penalty representation with discounting nor the goal-reward representation with discounting have this property. The article then shows exactly when this trapping phenomenon occurs, using a novel interpretation of discounting, namely that it models agents that use convex exponential utility functions and thus are optimistic in the face of uncertainty. Finally, it is shown how the selective state-deletion method can be used in conjunction with standard decision-theoretic planners to eliminate the trapping phenomenon.
2269541
Principal component analysis for predicting transcription-factor binding motifs from array-derived data
BackgroundThe responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to transcription-factor binding motifs (TFBMs). In order to select a critical set of TFBMs from genomic DNA information and an array-derived data, an efficient algorithm to solve a combinatorial optimization problem is required. Although computational approaches based on evolutionary algorithms are commonly employed, an analytical algorithm would be useful to predict TFBMs at nearly no computational cost and evaluate varying modelling conditions. Singular value decomposition (SVD) is a powerful method to derive primary components of a given matrix. Applying SVD to a promoter matrix defined from regulatory DNA sequences, we derived a novel method to predict the critical set of TFBMs.ResultsThe promoter matrix was defined to establish a quantitative relationship between the IL-1-driven mRNA alteration and genomic DNA sequences of the IL-1 responsive genes. The matrix was decomposed with SVD, and the effects of 8 potential TFBMs (5'-CAGGC-3', 5'-CGCCC-3', 5'-CCGCC-3', 5'-ATGGG-3', 5'-GGGAA-3', 5'-CGTCC-3', 5'-AAAGG-3', and 5'-ACCCA-3') were predicted from a pool of 512 random DNA sequences. The prediction included matches to the core binding motifs of biologically known TFBMs such as AP2, SP1, EGR1, KROX, GC-BOX, ABI4, ETF, E2F, SRF, STAT, IK-1, PPARγ, STAF, ROAZ, and NFκB, and their significance was evaluated numerically using Monte Carlo simulation and genetic algorithm.ConclusionThe described SVD-based prediction is an analytical method to provide a set of potential TFBMs involved in transcriptional regulation. The results would be useful to evaluate analytically a contribution of individual DNA sequences.
13208870
An Evolutionary Approach to Adaptive Model-Building
Learning an input-output mapping from a set of examples can be regarded as a problem of model-building. From this point of view, by a hierarchical representation scheme for models, an evolutionary computational approach to model-building problems is proposed in this paper, which is based on the ideas from the evolution programs and the genetic programmings. The computer experiments indicate that it is surprisingly effective in searching the optimal model for model-building problems.