17553402
Efficient Parallel Algorithms for Euclidean Distance Transform
The Euclidean Distance Transform (EDT) converts a binary image into one where each pixel has a value equal to its distance to the nearest foreground pixel. Two parallel algorithms for EDT transform on linear array with reconfigurable pipeline bus system (LARPBS) are presented. For an image with n×n pixels, the first algorithm can complete EDT transform in ) log log log log log log ( n n n O time using n processors. The second algorithm can compute the EDT in O( log n loglog n) time using n n log log 2 processors.
441449
A novel ant clustering algorithm based on cellular automata
Based on the principle of cellular automata in artificial life, an artificial ant sleeping model (ASM) and an ant algorithm for cluster analysis (A4C) are presented. Inspired by the behaviors of gregarious ant colonies, we use the ant agent to represent a data object. In ASM, each ant has two states: a sleeping state and an active state. The ant's state is controlled by a function of the ant's fitness to the environment it locates and a probability for the ants becoming active. The state of an ant is determined only by its local information. By moving dynamically, the ants form different subgroups adaptively, and hence the data objects they represent are clustered. Experimental results show that the A4C algorithm on ASM is significantly better than other clustering methods in terms of both speed and quality. It is adaptive, robust and efficient, achieving high autonomy, simplicity and efficiency.
60542101
A novel ant clustering algorithm based on cellular automata
Based on the principle of cellular automata in artificial life, an artificial ant sleeping model (ASM) and an ant algorithm for cluster analysis (A4C) are presented. Inspired by the behaviors of gregarious ant colonies, we use the ant agent to represent a data object. In ASM, each ant has two states: a sleeping state and an active state. The ant's state is controlled by a function of the ant's fitness to the environment it locates and a probability for the ants becoming active. The state of an ant is determined only by its local information. By moving dynamically, the ants form different subgroups adaptively, and hence the data objects they represent are clustered. Experimental results show that the A4C algorithm on ASM is significantly better than other clustering methods in terms of both speed and quality. It is adaptive, robust and efficient, achieving high autonomy, simplicity and efficiency.
6316461
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly improves the solution time and quality by utilizing the locality structure of the problem. The algorithm solves the multiple sequence alignment in three stages. First, an automated and suboptimal partitioning strategy is used to divide the set of sequences into several subsections. Then a multiple sequence alignment algorithm based on ant colony optimization is used to align the sequences of each subsection. Finally, the alignment of original sequences can be obtained by assembling the result of each subsection. The ant colony algorithm is highly optimized in order to avoid local optimal traps and converge to global optimal efficiently. Experimental results show that the algorithm can significantly reduce the running time and improve the solution quality on large-scale multiple sequence alignment benchmarks.
5569010
A Fast Efficient Parallel Hough Transform Algorithm on LARPBS
A parallel algorithm for Hough transform on a linear array with reconfigurable pipeline bus system (LARPBS) is presented. Suppose the number of θ-values to be considered is m, for an image with n × n pixels, the algorithm can complete Hough transform in O(1) time using mn2 processors and achieve optimal speed and efficiency. We also illustrate how to partition data and perform the algorithm on a LARPBS with fewer than mn2 processors, and hence show that the algorithm is highly scalable.
14175949
GATES: a grid-based middleware for processing distributed data streams
Increasingly, a number of applications rely on, or can potentially benefit from, analysis and monitoring of data streams. Moreover, many of these applications involve high volume data streams and require distributed processing of data arising from a distributed set of sources. Thus, we believe that a grid environment is well suited for flexible and adaptive analysis of these streams. This paper reports the design and initial evaluation of a middleware for processing distributed data streams. Our system is referred to as GATES (grid-based adaptive execution on streams). This system is designed to use the existing grid standards and tools to the extent possible. It flexibly achieves the best accuracy that is possible while maintaining the real-time constraint on the analysis. We have developed a self-adaptation algorithm for this purpose. Results from a detailed evaluation of this system demonstrate the benefits of distributed processing, and the effectiveness of our self-adaptation algorithm.
16535706
An efficient architecture for two-dimensional discrete wavelet transform
This paper proposes an efficient architecture for the two-dimensional discrete wavelet transform (2-D DWT). The proposed architecture includes a transform module, a RAM module, and a multiplexer. In the transform module, we employ the polyphase decomposition technique and the coefficient folding technique to the decimation filters of stages 1 and 2, respectively. In comparison with other 2-D DWT architectures, the advantages of the proposed architecture are 100% hardware utilization, fast computing time (0.5-0.67 times of the parallel filters'), regular data flow, and low control complexity, making this architecture suitable for next generation image compression systems, e.g., JPEG-2000.
12599093
A scalable software-based self-test methodology for programmable processors
Software-based self-test (SBST) is an emerging approach to address the challenges of high-quality, at-speed test for complex programmable processors and systems-on chips (SoCs) that contain them. While early work on SBST has proposed several promising ideas, many challenges remain in applying SBST to realistic embedded processors. We propose a systematic scalable methodology for SBST that automates several key steps. The proposed methodology consists of (i) identifying test program templates that are well suited for test delivery to each module within the processor, (ii) extracting input/output mapping functions that capture the controllability/observability constraints imposed by a test program template for a specific module-under-test, (iii) generating module-level tests by representing the input/output mapping functions as virtual constraint circuits, and (iv) automatic synthesis of a software self-test program from the module-level tests. We propose novel RTL simulation-based techniques for template ranking and selection, and techniques based on the theory of statistical regression for extraction of input/output mapping functions. An important advantage of the proposed techniques is their scalability, which is necessitated by the significant and growing complexity of embedded processors.To demonstrate the utility of the proposed methodology, we have applied it to a commercial state-of-the-art embedded processor (Xtensa™ from Tensilica Inc.). We believe this is the first practical demonstration of software-based self-test on a processor of such complexity. Experimental results demonstrate that software self-test programs generated using the proposed methodology are able to detect most (95.2%) of the functionally testable faults, and achieve significant simultaneous improvements in fault coverage and test length compared with conventional functional test.
5457020
Identifying metabolic enzymes with multiple types of association evidence
BackgroundExisting large-scale metabolic models of sequenced organisms commonly include enzymatic functions which can not be attributed to any gene in that organism. Existing computational strategies for identifying such missing genes rely primarily on sequence homology to known enzyme-encoding genes.ResultsWe present a novel method for identifying genes encoding for a specific metabolic function based on a local structure of metabolic network and multiple types of functional association evidence, including clustering of genes on the chromosome, similarity of phylogenetic profiles, gene expression, protein fusion events and others. Using E. coli and S. cerevisiae metabolic networks, we illustrate predictive ability of each individual type of association evidence and show that significantly better predictions can be obtained based on the combination of all data. In this way our method is able to predict 60% of enzyme-encoding genes of E. coli metabolism within the top 10 (out of 3551) candidates for their enzymatic function, and as a top candidate within 43% of the cases.ConclusionWe illustrate that a combination of genome context and other functional association evidence is effective in predicting genes encoding metabolic enzymes. Our approach does not rely on direct sequence homology to known enzyme-encoding genes, and can be used in conjunction with traditional homology-based metabolic reconstruction methods. The method can also be used to target orphan metabolic activities.
206952974
High throughput CORDIC-based systolic array design for the discrete cosine transform
In this paper, we propose a modified Malvar algorithm that can transfer the Discrete Hartley Transform (DHT) results to the Discrete Cosine Transform (DCT) by using a one additional CORDIC computing stage. A fast CORDIC-based systolic array is designed with four attractive features the single/double data folding feature; the constructive feature; the co-computing feature; and redundant path computation. Due to the existence of the redundant path, the proposed design also has the capability of error detection.<<ETX>>