60542101
A novel ant clustering algorithm based on cellular automata
Based on the principle of cellular automata in artificial life, an artificial ant sleeping model (ASM) and an ant algorithm for cluster analysis (A4C) are presented. Inspired by the behaviors of gregarious ant colonies, we use the ant agent to represent a data object. In ASM, each ant has two states: a sleeping state and an active state. The ant's state is controlled by a function of the ant's fitness to the environment it locates and a probability for the ants becoming active. The state of an ant is determined only by its local information. By moving dynamically, the ants form different subgroups adaptively, and hence the data objects they represent are clustered. Experimental results show that the A4C algorithm on ASM is significantly better than other clustering methods in terms of both speed and quality. It is adaptive, robust and efficient, achieving high autonomy, simplicity and efficiency.
6316461
Partitioned optimization algorithms for multiple sequence alignment
Multiple sequence alignment is an important and difficult problem in molecular biology and bioinformatics. In this paper, we propose a partitioning approach that significantly improves the solution time and quality by utilizing the locality structure of the problem. The algorithm solves the multiple sequence alignment in three stages. First, an automated and suboptimal partitioning strategy is used to divide the set of sequences into several subsections. Then a multiple sequence alignment algorithm based on ant colony optimization is used to align the sequences of each subsection. Finally, the alignment of original sequences can be obtained by assembling the result of each subsection. The ant colony algorithm is highly optimized in order to avoid local optimal traps and converge to global optimal efficiently. Experimental results show that the algorithm can significantly reduce the running time and improve the solution quality on large-scale multiple sequence alignment benchmarks.
44509988
A threshold criterion, auto-detection and its use in MST-based clustering
Clustering is to group data points into homogenous clusters so that data points within the same cluster are more similar than data points belonging to different clusters. There are many effective clustering algorithms for discovering arbitrary shaped clusters, but one common problem of many algorithms is the difficulty for users to decide appropriate parameters for these algorithms. To reduce the dependence of clustering performance on parameters, this paper proposes a threshold criterion for the single linkage cluster analysis and incorporates it into the Minimum Spanning Tree (MST) based clustering method. Since the threshold can be automatically decided according to the underlying data distributions, arbitrary shaped clusters can be discovered with little human intervention. The experimental results on spatial data are very encouraging.
12599093
A scalable software-based self-test methodology for programmable processors
Software-based self-test (SBST) is an emerging approach to address the challenges of high-quality, at-speed test for complex programmable processors and systems-on chips (SoCs) that contain them. While early work on SBST has proposed several promising ideas, many challenges remain in applying SBST to realistic embedded processors. We propose a systematic scalable methodology for SBST that automates several key steps. The proposed methodology consists of (i) identifying test program templates that are well suited for test delivery to each module within the processor, (ii) extracting input/output mapping functions that capture the controllability/observability constraints imposed by a test program template for a specific module-under-test, (iii) generating module-level tests by representing the input/output mapping functions as virtual constraint circuits, and (iv) automatic synthesis of a software self-test program from the module-level tests. We propose novel RTL simulation-based techniques for template ranking and selection, and techniques based on the theory of statistical regression for extraction of input/output mapping functions. An important advantage of the proposed techniques is their scalability, which is necessitated by the significant and growing complexity of embedded processors.To demonstrate the utility of the proposed methodology, we have applied it to a commercial state-of-the-art embedded processor (Xtensa™ from Tensilica Inc.). We believe this is the first practical demonstration of software-based self-test on a processor of such complexity. Experimental results demonstrate that software self-test programs generated using the proposed methodology are able to detect most (95.2%) of the functionally testable faults, and achieve significant simultaneous improvements in fault coverage and test length compared with conventional functional test.
10161187
Accuracy of link capacity estimates using passive and active approaches with CapProbe
CapProbe is an inexpensive and accurate means to estimate capacity. CapProbe combines both dispersion and end-to-end delay to estimate the capacity of the narrowest link on a path. We evaluate in this paper the accuracy of CapProbe estimation, and its dependence on end systems speed, packet sizes, narrow link speeds, and other system parameters. We test kernel and user level implementations of CapProbe and find the kernel implementation to be much more accurate. We also evaluate through experiments the effect of probing packet size on the accuracy of CapProbe estimation. Finally, we explore the idea of a "passive CapProbe" within the context of a TCP flow. Passive here means that the dispersion and delay observed for the TCP flow data and ACK packets, without introducing any additional probing packets. We test active and passive versions of CapProbe with TCP. The active version is found to produce more accurate capacity estimates than the passive version.
6229211
Resource allocation in a middleware for streaming data
Increasingly, a number of applications rely on, or can potentially benefit from, analysis and monitoring of <i>data streams.</i> To support processing of streaming data in a grid environment, we have been developing a middleware system called GATES (Grid-based AdapTive Execution on Streams). Our target applications are those involving high volume data streams and requiring distributed processing of data arising from a distributed set of sources.
 This paper addresses the problem of resource allocation in the GATES system. Though resource discovery and resource allocation have been active topics in grid community, the pipelined processing and real-time constraint required by distributed streaming applications pose new challenges. We present a resource allocation algorithm that is based on minimal spanning trees. We evaluate the algorithm experimentally and demonstrate that it results in configurations that are very close to optimal, and significantly better than most other possible configurations.
9617419
Hybrid critiquing-based recommender systems
We propose a novel critiquing-based recommender interface, the hybrid critiquing interface that integrates the user self-motivated critiquing facility to compensate for the limitations of system-proposed critiques. The results from our user study show that the integration of such self-motivated critiquing support enables users to achieve a higher level of decision accuracy while consuming less cognitive effort. In addition, users expressed higher subjective opinions of the hybrid critiquing interface than the interface simply providing system-proposed critiques, and they would more likely return to it for future use.