9345376
Finding recently frequent itemsets adaptively over online transactional data streams,
A data stream is a massive unbounded sequence of data elements continuously generated at a rapid rate. Consequently, the knowledge embedded in a data stream is more likely to be changed as time goes by. Identifying the recent change of a data stream, especially for an online data stream, can provide valuable information for the analysis of the data stream. However, most of mining algorithms or frequency approximation algorithms over a data stream do not differentiate the information of recently generated data elements from the obsolete information of old data elements which may be no longer useful or possibly invalid at present. Therefore, they are not able to extract the recent change of information in a data stream adaptively. This paper proposes a data mining method for finding recently frequent itemsets adaptively over an online transactional data stream. The effect of old transactions on the current mining result of a data steam is diminished by decaying the old occurrences of each itemset as time goes by. Furthermore, several optimization techniques are devised to minimize processing time as well as memory usage. Finally, the performance of the proposed method is analyzed by a series of experiments to identify its various characteristics.
14320982
Sequential Pattern Mining in Multi-Databases via Multiple Alignment
To efficiently find global patterns from a multi-database, information in each local database must first be mined and summarized at the local level. Then only the summarized information is forwarded to the global mining process. However, conventional sequential pattern mining methods based on support cannot summarize the local information and is ineffective for global pattern mining from multiple data sources. In this paper, we present an alternative local mining approach for finding sequential patterns in the local databases of a multi-database. We propose the theme of approximate sequential pattern mining roughly defined as identifying patterns approximately shared by many sequences. Approximate sequential patterns can effectively summerize and represent the local databases by identifying the underlying trends in the data. We present a novel algorithm, ApproxMAP, to mine approximate sequential patterns, called consensus patterns, from large sequence databases in two steps. First, sequences are clustered by similarity. Then, consensus patterns are mined directly from each cluster through multiple alignment. We conduct an extensive and systematic performance study over synthetic and real data. The results demonstrate that ApproxMAP is effective and scalable in mining large sequences databases with long patterns. Hence, ApproxMAP can efficiently summarize a local database and reduce the cost for global mining. Furthremore, we present an elegant and uniform model to identify both high vote sequential patterns and exceptional sequential patterns from the collection of these consensus patterns from each local databases.
17166482
Benchmarking the effectiveness of sequential pattern mining methods
Recently, there is an increasing interest in new intelligent mining methods to find more meaningful and compact results. In intelligent data mining research, accessing the quality and usefulness of the results from different mining methods is essential. However, there is no general benchmarking criteria to evaluate whether these new methods are indeed more effective compared to the traditional methods. Here we propose a novel benchmarking criteria that can systematically evaluate the effectiveness of any sequential pattern mining method under a variety of situations. The benchmark evaluates how well a mining method finds known common patterns in synthetic data. Such an evaluation provides a comprehensive understanding of the resulting patterns generated from any mining method empirically. In this paper, the criteria are applied to conduct a detailed comparison study of the support-based sequential pattern model with an approximate pattern model based on sequence alignment. The study suggests that the alignment model will give a good summary of the sequential data in the form of a set of common patterns in the data. In contrast, the support model generates massive amounts of frequent patterns with much redundancy. This suggests that the results of the support model require more post processing before it can be of actual use in real applications.
37599184
Finding frequent itemsets over online data streams
Abstract Conventional data mining methods for finding frequent itemsets require considerable computing time to produce their results from a large data set. Due to this reason, it is almost impossible to apply them to an analysis task in an online data stream where a new transaction is continuously generated at a rapid rate. An algorithm for finding frequent itemsets over an online data stream should support flexible trade-off between processing time and mining accuracy. Furthermore, the most up-to-date resulting set of frequent itemsets should be available quickly at any moment. To satisfy these requirements, this paper proposes a data mining method for finding frequent itemsets over an online data stream. The proposed method examines each transaction one-by-one without any candidate generation process. The count of an itemset that appears in each transaction is monitored by a lexicographic tree resided in main memory. The current set of monitored itemsets in an online data stream is minimized by two major operations: delayed-insertion and pruning . The former is delaying the insertion of a new itemset in recent transactions until the itemset becomes significant enough to be monitored. The latter is pruning a monitored itemset when the itemset turns out to be insignificant. The number of monitored itemsets can be flexibly controlled by the thresholds of these two operations. As the number of monitored itemsets is decreased, frequent itemsets in the online data stream are more rapidly traced while they are less accurate. The performance of the proposed method is analyzed through a series of experiments in order to identify its various characteristics.
38826941
Effect of Count Estimation in Finding Frequent Itemsets over Online Transactional Data Streams
A data stream is a massive unbounded sequence of data elements continuously generated at a rapid rate. Due to this reason, most algorithms for data streams sacrifice the correctness of their results for fast processing time. The processing time is greatly influenced by the amount of information that should be maintained. This issue becomes more serious in finding frequent itemsets or frequency counting over an online transactional data stream since there can be a large number of itemsets to be monitored. We have proposed a method called theestDec method for finding frequent itemsets over an online data stream. In order to reduce the number of monitored itemsets in this method, monitoring the count of an itemset is delayed until its support is large enough to become a frequent itemset in the near future. For this purpose, the count of an itemset should be estimated. Consequently, how to estimate the count of an itemset is a critical issue in minimizing memory usage as well as processing time. In this paper, the effects of various count estimation methods for finding frequent itemsets are analyzed in terms of mining accuracy, memory usage and processing time.
14591723
A Sliding Window Method for Finding Recently Frequent Itemsets over Online Data Streams
A data stream is a massive unbounded sequence of data elements continuously generated at a rapid rate. Consequently, the knowledge embedded in a data stream is likely to be changed as time goes by. However, most of miming algorithms or frequency approximation algorithms for a data stream do not able to extract the recent change of information in a data stream adaptively. This paper proposes a sliding window method of finding recently frequent itemsets over an online data stream. The size of a window defines a desired life-time of the information of a transaction in a data stream.
12198410
Scalable hardware-algorithm for mark-sweep garbage collection
The memory-intensive nature of object-oriented languages such as C++ and Java has created the need for high-performance dynamic memory management. Object-oriented applications often generate higher memory intensity in the heap region. Thus, a high-performance memory manager is needed to cope with such applications. As today's VLSI technology advances, it becomes increasingly attractive to map software algorithms such as malloc(), free() and garbage collection into hardware. This paper presents a hardware design of a sweeping function (for mark-and-sweep garbage collection) that fully utilizes the advantages of combinational logic. In our scheme, the bit sweep can detect and sweep the garbage in a constant time. Bit-map marking in software can improve the cache performance and reduce number of page faults; however, it often requires several instructions to perform a single mark. In our scheme, only one hardware instruction is required per mark. Moreover, since the complexity of the sweeping phase is often higher than the marking phase, the garbage collection time may be substantially improved. The hardware complexity of the proposed scheme (bit-sweeper) is O(n), where n represents the size of the bit map.
26357528
An advanced instruction folding mechanism for a stackless Java processor
In order to improve the execution speed of Java in hardware, a new advanced instruction folding technique has been developed. In this paper an instruction folding scheme based on an advanced Producer, Operator and Consumer (POC) model is proposed and demonstrates improvement in bytecode execution over the existing techniques. The proposed POC model is able to detect and fold all possible instruction sequence types dynamically in hardware, including a sequence that is separated by other bytecode instructions. SPEC JMV98 benchmark results show that the proposed POC model-based folder can save more than 90% of folding operations. In this research, the proposed instruction folding technique can eliminate most of the stack operations and the use of a physical operand stack, and can thereby achieve the performance of high-end RISC processors.
2829100
GAPSCORE: finding gene and protein names one word at a time
MOTIVATION
New high-throughput technologies have accelerated the accumulation of knowledge about genes and proteins. However, much knowledge is still stored as written natural language text. Therefore, we have developed a new method, GAPSCORE, to identify gene and protein names in text. GAPSCORE scores words based on a statistical model of gene names that quantifies their appearance, morphology and context.


RESULTS
We evaluated GAPSCORE against the Yapex data set and achieved an F-score of 82.5% (83.3% recall, 81.5% precision) for partial matches and 57.6% (58.5% recall, 56.7% precision) for exact matches. Since the method is statistical, users can choose score cutoffs that adjust the performance according to their needs.


AVAILABILITY
GAPSCORE is available at http://bionlp.stanford.edu/gapscore/
1021056
A performance perspective on the Active Memory System
Abstract One major problem of using Java in real-time and embedded devices is the non-deterministic turnaround time of dynamic memory management systems (memory allocation and garbage collection). For the allocation, the non-determinism is often contributed by the time to perform searching, splitting, and coalescing. For the garbage collection, the turnaround time is usually determined by the size of the heap, the number of live objects, the number of object collected, and the amount of garbage collected. Even with the current state-of-the-art garbage collectors (generational and incremental schemes), they may or may not guarantee the worst-case latency. Moreover, such schemes often prolong overall garbage collection time. In this paper, the performance analysis of the proposed Active Memory Module (AMM) for embedded systems is presented. Unlike the software counterparts, the AMM can perform a memory allocation in a predictable and bounded fashion (14 cycles). Moreover, it can also yield a bounded sweeping time regardless of the number of live objects or heap size. By utilizing the proposed system, the overall speedup can be as high as 23% compared to the garbage collection system of the JDK 1.2.2 running in classic mode.
38166516
A Sufficient Condition for Quasi-Claw-Free Hamiltonian Graphs
There are several well-known and important hamiltonian results for claw-free graphs but only a few are concerned with quasi-claw-free graphs. In this note, we provide a new sufficient condition for quasi-claw-free hamiltonian graphs.