7252877
FARMER: finding interesting rule groups in microarray datasets
Microarray datasets typically contain large number of columns but small number of rows. Association rules have been proved to be useful in analyzing such datasets. However, most existing association rule mining algorithms are unable to efficiently handle datasets with large number of columns. Moreover, the number of association rules generated from such datasets is enormous due to the large number of possible column combinations.In this paper, we describe a new algorithm called FARMER that is specially designed to discover association rules from microarray datasets. Instead of finding individual association rules, FARMER finds interesting rule groups which are essentially a set of rules that are generated from the same set of rows. Unlike conventional rule mining algorithms, FARMER searches for interesting rules in the row enumeration space and exploits all user-specified constraints including minimum support, confidence and chi-square to support efficient pruning. Several experiments on real bioinformatics datasets show that FARMER is orders of magnitude faster than previous association rule mining algorithms.
9042204
CRD: fast co-clustering on large datasets utilizing sampling-based matrix decomposition
The problem of simultaneously clustering columns and rows (co-clustering) arises in important applications, such as text data mining, microarray analysis, and recommendation system analysis. Compared with the classical clustering algorithms, co-clustering algorithms have been shown to be more effective in discovering hidden clustering structures in the data matrix. The complexity of previous co-clustering algorithms is usually O(m X n), where m and n are the numbers of rows and columns in the data matrix respectively. This limits their applicability to data matrices involving a large number of columns and rows. Moreover, some huge datasets can not be entirely held in main memory during co-clustering which violates the assumption made by the previous algorithms. In this paper, we propose a general framework for fast co-clustering large datasets, CRD. By utilizing recently developed sampling-based matrix decomposition methods, CRD achieves an execution time linear in m and n. Also, CRD does not require the whole data matrix be in the main memory. We conducted extensive experiments on both real and synthetic data. Compared with previous co-clustering algorithms, CRD achieves competitive accuracy but with much less computational cost.
108674
Sample Selection for Maximal Diversity
The problem of selecting a sample subset sufficient to preserve diversity arises in many applications. One example is in the design of recombinant inbred lines (RIL) for genetic association studies. In this context, genetic diversity is measured by how many alleles are retained in the resulting inbred strains. RIL panels that are derived from more than two parental strains, such as the collaborative cross (Churchill et al., 2004), present a particular challenge with regard to which of the many existing lab mouse strains should be included in the initial breeding funnel in order to maximize allele retention. A similar problem occurs in the study of customer reviews when selecting a subset of products with a maximal diversity in reviews. Diversity in this case implies the presence of a set of products having both positive and negative ranks for each customer. In this paper, we demonstrate that selecting an optimal diversity subset is an NP-complete problem via reduction to set cover. This reduction is sufficiently tight that greedy approximations to the set cover problem directly apply to maximizing diversity. We then suggest a slightly modified subset selection problem in which an initial greedy diversity solution is used to effectively prune an exhaustive search for all diversity subsets bounded from below by a specified coverage threshold. Extensive experiments on real datasets are performed to demonstrate the effectiveness and efficiency of our approach.
11841640
Accelerating Profile Queries in Elevation Maps
Elevation maps are a widely used spatial data representation in geographical information systems (GIS). Paths on elevation maps can be characterized by profiles, which describe relative elevation as a function of distance. In this research, we address the inverse of this mapping - given a profile, how to efficiently find paths that could have generated it. This is called the profile query problem. Profiles have a wide variety of uses that include registering tracking information, or even other maps, to a given map. We describe a probabilistic model to characterize the maximal likelihood that a point lying on a path matches the query profile. Propagation of such probabilities to neighboring points can effectively prune the search space. This model enables us to efficiently answer queries of arbitrary profiles with user-specified error tolerances. When compared to existing spatial index methods, our approach supports more flexible queries with orders of magnitude speedup.
2768791
Finding representative set from massive data
In the information age, data is pervasive. In some applications, data explosion is a significant phenomenon. The massive data volume poses challenges to both human users and computers. In this project, we propose a new model for identifying representative set from a large database. A representative set is a special subset of the original dataset, which has three main characteristics: It is significantly smaller in size compared to the original dataset. It captures the most information from the original dataset compared to other subsets of the same size. It has low redundancy among the representatives it contains. We use information-theoretic measures such as mutual information and relative entropy to measure the representativeness of the representative set. We first design a greedy algorithm and then present a heuristic algorithm that delivers much better performance. We run experiments on two real datasets and evaluate the effectiveness of our representative set in terms of coverage and accuracy. The experiments show that our representative set attains expected characteristics and captures information more efficiently.
268487
Mining non-redundant high order correlations in binary data
Many approaches have been proposed to find correlations in binary data. Usually, these methods focus on pair-wise correlations. In biology applications, it is important to find correlations that involve more than just two features. Moreover, a set of strongly correlated features should be non-redundant in the sense that the correlation is strong only when all the interacting features are considered together. Removing any feature will greatly reduce the correlation.In this paper, we explore the problem of finding non-redundant high order correlations in binary data. The high order correlations are formalized using multi-information, a generalization of pairwise mutual information. To reduce the redundancy, we require any subset of a strongly correlated feature subset to be weakly correlated. Such feature subsets are referred to as Non-redundant Interacting Feature Subsets (NIFS). Finding all NIFSs is computationally challenging, because in addition to enumerating feature combinations, we also need to check all their subsets for redundancy. We study several properties of NIFSs and show that these properties are useful in developing efficient algorithms. We further develop two sets of upper and lower bounds on the correlations, which can be incorporated in the algorithm to prune the search space. A simple and effective pruning strategy based on pair-wise mutual information is also developed to further prune the search space. The efficiency and effectiveness of our approach are demonstrated through extensive experiments on synthetic and real-life datasets.
14116036
Measuring blocking artifacts using edge direction information
Block-based transform coding is the most popular approach for image and video compression. The objective measurement of blocking artifacts plays an important role in the design, optimization, and assessment of image and video coding systems. This paper presents a new algorithm for measuring blocking artifacts in images and videos. Instead of using the traditional pixel discontinuity along the block boundary, we use the edge directional information of the images. The new algorithm does not need the exact location of the block boundary thus is invariant to the displacement, rotation and scaling of the images. Experiments on various still images and videos show that the new blockiness measure is very efficient in terms of computational complexity and memory usage, and can produce blocking artifacts measurement consistent with subjective rating.
31618528
Efficient contact state graph generation for assembly applications
An important aspect in the design of many automated assembly strategies is the ability to automatically generate the set of contact states that may occur during an assembly task. In this paper, we present an efficient means of constructing the set of all geometrically feasible contact states that may occur within a bounded set of misalignments (bounds determined by robot inaccuracy). This set is stored as a graph, referred to as an Assembly Contact State Graph (ACSG), which indicates neighbor relationships between feasible states. An ACSG is constructed without user intervention in two stages. In the first stage, all hypothetical primitive principle contacts (PPCs; all contact states allowing 5 degrees of freedom) are evaluated for geometric feasibility with respect to part-imposed and robot-imposed restrictions on relative positioning (evaluated using optimization). In the second stage, the feasibility of each of the various combinations of PPCs is efficiently evaluated, first using topological existence and uniqueness criteria, then using part-imposed and robot-imposed geometric criteria.
9260921
Complexity adaptive quantization for intra-frames in very low bit rate video coding
Conventional rate control schemes focus on the problem of finding an optimal quantization value for P- and B-frames. No rate control is available for the encoding of I-frames. This could pose big problems due to the large number of bits an I-frame could generate, and due to the fact that the number of bits varies drastically from sequence to sequence, depending on their image complexity. This problem becomes severe especially at very low bit rate. Therefore, a mechanism to allocate data bits to an I-frame according to its complexity is indispensable in order to have constant coding quality. This work presents a mechanism to establish for I-frames a generic relationship between the quantization value, data bits, and their image complexity. Experimental results show that this generic relationship provides a fairly accurate estimation of quantization value for an I-frame at given data bits and image complexity, and is very useful in controlling the data bits generated by an I-frame.
18783473
A multi-objective-based non-stationary UAV assignment model for constraints handling using PSO
An unmanned aerial vehicle (UAV) assignment requires allocating vehicles to destinations to complete various jobs. It is a complex assignment problem with hard constraints, and potential dimensional explosion when the scenarios become more complicated and the size of problems increases. Moreover, the non-stationary UAV assignment problem, studied in the paper, is more difficult, since dynamic scenarios are introduced, e.g. change of the number, or different task requirements of targets and vehicle, etc. In this paper, a "Constraint-First-Objective- Next" model is proposed for the non-stationary problem. The proposed model can effectively handle constraints as an additional objective, including constraints expressed by nature language, and is flexible enough to be combined with kinds of intelligent computation algorithms. A local version of PSO is cooperated with the proposed model to solve non-stationary UAV assignment problems. Numerical experimental results illustrate that it can efficiently achieve the optima and demonstrate the effectiveness.
27182192
A unified architecture for real-time video-coding systems
This paper presents a unified architecture for a live video over the Internet with emphasis on solving some challenging problems such as network bandwidth adaptation for rate and congestion, loss packet recovery, joint source and channel coding, and packetization. In our architecture, a time-varying bit rate for the source coding and time-varying ratios for the channel coding are simultaneously computed by a new congestion-control protocol. An adaptive rate-control scheme is then proposed to calculate quantization parameters and to determine the number of skipping frames corresponding to the bit rate. An adaptive unequal error-control scheme is also provided to protect the bitstream. Furthermore, a simple and MPEG-4 standard compatible algorithm is designed to packetize generated bitstream at the SyncLayer by using the existing resynchronization marker approach. With the proposed architecture, the coding efficiency and the robustness of the whole system are improved greatly.