2479481
Gene Regulatory Network Construction Using Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM)
Discovering gene relationship from gene expression data is a hot topic in the post-genomic era. In recent years, Bayesian network has become a popular method to reconstruct the gene regulatory network due to the statistical nature. However, it is not suitable for analyzing the time-series data and cannot deal with cycles in the gene regulatory network. In this paper we apply the dynamic Bayesian network to model the gene relationship in order to overcome these difficulties. By incorporating the structural expectation maximization algorithm into the dynamic Bayesian network model, we develop a new method to learn the regulatory network from the S. Cerevisiae cell cycle gene expression data. The experimental results demonstrate that. the accuracy of our method outperforms the previous work.
41660705
Fault Diagnosis on Satellite Attitude Control with Dynamic Neural Network
With increasing demands on higher performance, more safety and reliability of dynamic systems, especially on safety-critical systems, fault diagnosis became a research interests in recent years. In this paper, a systematic approach to design fault diagnosis and accommodation with compound approach such as applying improved robust observer to fault diagnosis on linearized system aided by dynamic neural network, which is trained to bridge the gap between simulated system and real system on nonlinear attributes and modeling errors. Using an instance of fault diagnosis on attitude control system of satellite attitude, advantages of new scheme are tested to be effective.
5444016
Arbitrary warped document image restoration based on segmentation and Thin-Plate Splines
Warping is a common appearance in camera captured document images. It is the primary factor that makes such kind of document images hard to be recognized. Therefore it is necessary to restore warped document image before recognition. In this paper, a novel restore method is presented. The method takes a rough line segmentation and character segmentation firstly in order to estimate the warping direction. Then several pairs of key points mapping between the original image and the restored image are determined and thin-plate splines (TPS), which is an interpolation algorithm, is introduced to restore the image. Such process can effectively describe the warping direction of the document and successfully restore the image. Some experimental results show the effect of the image restoration and compare the recognition rate before and after the restoration based on a same OCR application.
16162037
Ranking-Based Statistical Localization for Wireless Sensor Networks
This paper studies Ranking-Based localization method, which, as a special case of common Range-Based localization methods, statistically estimates node positions using the ranking-order constraints rather than the actual values of network measurements. Through extensive empirical evaluation, the advantages of Ranking-Based approach over traditional Range-Based approaches under extreme network conditions are verified. Ranking-Based approach turns out to be more robust to measurement insufficiency and more immune to measurement noise.
39739560
Optimal Motion Generation of Flexible Macro-micro Manipulator Systems Using Estimation of Distribution Algorithm
In this paper, a new approach for motion generation and optimization of the flexible macro-micro manipulator system is proposed based on Estimation of Distribution Algorithm (EDA). The macro-micro manipulator system is a redundant system, of which inverse kinematics remains challenging, with no generic solution to date. Here, the manipulator system configurations, or the optimal joint motions, are generated using the EDA algorithm base on Gaussian probability model. Compared with simple genetic algorithms (SGA), this approach uses fewer parameters and the time for motion optimization is remarkably reduced. The proposed approach shows excellent performance on motion generation and optimization of a flexible macro-micro manipulator system, as demonstrated by the simulation results.
34552917
A new dynamic Bayesian network for integrating multiple data in estimating gene networks
We propose a novel method for estimating a gene regulatory network from both gene expression data and transcription factor binding location data. Based on dynamic Bayesian network (DBN) models, our method has two advantages. First, structural expectation maximization algorithm is embedded into a DBN framework, allowing it to learn the network with unknown structure and incomplete data, which cannot be tackled by expectation maximization algorithm. Second, since learning only from gene expression data is not enough to accurately estimate a gene network, we incorporate transcription factor binding location data through a structure prior. We demonstrate the effectiveness of the proposed method by the analysis of Saccharomyces Cerevisiae cell cycle data. The experimental results show that this new approach suits for dealing with missing values. Furthermore, combination of heterogeneous data from multiple sources ensures that our results are more accurate than those recovered from gene expression data alone.
815666
An Efficient Markerless Method for Resynthesizing Facial Animation on an Anatomy-Based Model
This paper describes a markerless method for automatically estimating animation parameters of an anatomy-based face model from a video sequence. The method is based upon an efficient tracking procedure which employs a linear subspace model of facial appearance. During the training phase of the tracking algorithm, a set of templates is computed from the subspace basis to alleviate the online computation. The efficient tracking algorithm establishes temporal correspondence of the face region by simultaneously determining both motion and appearance parameters. Using a set of key expressions of the actor together with corresponding animation parameters of the face model, we learn a linear relationship between facial animation parameters and appearance parameters. It allows us to efficiently estimate the animation parameters from appearance parameters provided by the tracker. We present experimental results performed on synthetic and live video sequences to demonstrate the effectiveness and efficiency of our method.
8269275
Web Services Based State of the Environment Reporting
The Environmental Sciences Division within Queensland Environmental Protection Agency works to monitor, assess and model the condition of the environment. The Division has as a legislative responsibility to produce a whole-of-government report every four years dealing environmental conditions and trends in a ”State of the Environment report” (SoE)[1][2][3]. State of Environment Web Service Reporting System is a supplementary web service based SoE reporting tool, which aims to deliver accurate, timely and accessible information on the condition of the environment through web services via Internet [4][5]. This prototype provides a scientific assessment of environmental conditions for a set of environmental indicators. It contains text descriptions and tables, charts and maps with spatiotemporal dimensions to show the impact of certain environmental indicators on our environment. This prototype is a template based indicator system, to which the administrator may add new sql queries for new indicator services without changing the architecture and codes of this template. The benefits are brought through a service-oriented architecture which provides an online query service with seamless integration. In addition, since it uses web service architecture, each individual component within the application can be implemented by using different programming languages and in different operating systems. Although the services showed in this demo are built upon two datasets of regional ecosystem and protection area of Queensland, it will be possible to report on the condition of water, air, land, coastal zones, energy resources, biodiversity, human settlements and natural culture heritage on the fly as well. Figure 1 shows the architecture of the prototype. In the next section, I will discuss the research tasks in the prototype.
21919804
Logical Relations for Dynamic Name Creation
Pitts and Stark’s nu-calculus is a typed lambda-calculus which forms a basis for the study of interaction between higher-order functions and dynamically created names. A similar approach has received renewed attention recently through Sumii and Pierce’s cryptographic lambda-calculus, which deals with security protocols. Logical relations are a powerful tool to prove properties of such a calculus, notably observational equivalence. While Pitts and Stark construct a logical relation for the nu-calculus, it rests heavily on operational aspects of the calculus and is hard to be extended. We propose an alternative Kripke logical relation for the nu-calculus, which is derived naturally from the categorical model of the nu-calculus and the general notion of Kripke logical relation. This is also related to the Kripke logical relation for the name creation monad by Goubault-Larrecq et al. (CSL’2002), which the authors claimed had similarities with Pitts and Stark’s logical relation. We show that their Kripke logical relation for names is strictly weaker than Pitts and Stark’s. We also show that our Kripke logical relation, which extends the definition of Goubault-Larrecq et al., is equivalent to Pitts and Stark’s up to first-order types; our definition rests on purely semantic constituents, and dispenses with the detours through operational semantics that Pitts and Stark use.
10021622
Dynamically Maintaining Duplicate-Insensitive and Time-Decayed Sum Using Time-Decaying Bloom Filter
The duplicate-insensitive and time-decayed sum of an arbitrary subset in a stream is an important aggregation for various analyses in many distributed stream scenarios. In general, precisely providing this sum in an unbounded and high-rate stream is infeasible. Therefore, we target at this problem and introduce a sketch, namely, time-decaying Bloom Filter (TDBF). The TDBF can detect duplicates in a stream and meanwhile dynamically maintain decayed-weight of all distinct elements in the stream according to a user-specified decay function. For a query for the current decayed sum of a subset in the stream, TDBF provides an effective estimation. In our theoretical analysis, a provably approximate guarantee has been given for the error of the estimation. In addition, the experimental results on synthetic stream validate our theoretical analysis.
59703933
Anatomy-based 3D facial modeling for expression animation
In this paper we propose a new hierarchical 3D facial model that conforms to the human facial anatomy for realistic facial expression animation. The facial model has a hierarchical biomechanical structure, incorporating a physically-based approximation to facial skin tissue, a set of anatomically-motivated facial muscle actuators and underlying skull structure. The deformable skin model has multi-layer structure to approximate different types of soft tissue. It takes into account the nonlinear stress-strain relationship of the skin and the fact that soft tissue is almost incompressible. Different kinds of muscle models have been developed to simulate the distribution of the muscle force on the skin due to muscle contraction. By the presence of the skull model, our facial model takes advantage of both more accurate facial deformation and the consideration of facial anatomy during the interactive definition of facial muscles. Under the muscular force, the deformation of the facial skin is evaluated by solving the governing dynamic equation numerically. To improve computational efficiency, we use a localized, semi-implicit integration method which allows a larger time step to be taken in the simulation while retaining stability. The dynamic facial animation algorithm runs at an interactive rate with flexible and realistic facial expressions to be generated.