( ( Long ( amino ( acid chains ) ) ) ( ( make ( ( ( ( proteins , ) ( chains ( in ( the ( proper order ) ) ) ) ) and ) shape ) ) . ) )
(ROOT (S (NP (JJ Long) (JJ amino) (NN acid) (NNS chains)) (VP (VBP make) (NP (NP (NNS proteins)) (, ,) (NP (NP (NNS chains)) (PP (IN in) (NP (DT the) (JJ proper) (NN order)))) (CC and) (NP (NN shape)))) (. .)))
Long amino acid chains make proteins, chains in the proper order and shape.
(ROOT (S (NP (NNPS Proteins)) (VP (VBP are) (NP (NP (JJ long) (NNS chains)) (PP (IN of) (NP (JJ amino) (NNS acids))))) (. .)))