( This ( ( includes ( ( ( ( eukaryotes ( such ( as ( ( fungi and ) protists ) ) ) ) , ) and ) ( ( prokaryotes , ) ( which ( are ( ( bacteria and ) archaea ) ) ) ) ) ) . ) )
(ROOT (S (NP (DT This)) (VP (VBZ includes) (NP (NP (NP (NNS eukaryotes)) (PP (JJ such) (IN as) (NP (NNS fungi) (CC and) (NNS protists)))) (, ,) (CC and) (NP (NP (NNS prokaryotes)) (, ,) (SBAR (WHNP (WDT which)) (S (VP (VBP are) (NP (NNS bacteria) (CC and) (NN archaea)))))))) (. .)))
This includes eukaryotes such as fungi and protists, and prokaryotes, which are bacteria and archaea.
(ROOT (S (NP (NNS Bacteria) (CC and) (NNS archaea)) (VP (VBP are) (NP (NP (NNS examples)) (PP (IN of) (NP (NNS prokaryotes))))) (. .)))