( There ( ( is ( ( a difference ) ( in ( ( the manner ) ( ( in which ) ( ( the proteins ) ( are ( sent ( ( ( to ( the ( endoplasmic reticulum ) ) ) and ) ( to ( the ( other organelles ) ) ) ) ) ) ) ) ) ) ) ) . ) )
(ROOT (S (NP (EX There)) (VP (VBZ is) (NP (NP (DT a) (NN difference)) (PP (IN in) (NP (NP (DT the) (NN manner)) (SBAR (WHPP (IN in) (WHNP (WDT which))) (S (NP (DT the) (NNS proteins)) (VP (VBP are) (VP (VBN sent) (PP (PP (TO to) (NP (DT the) (JJ endoplasmic) (NN reticulum))) (CC and) (PP (TO to) (NP (DT the) (JJ other) (NNS organelles)))))))))))) (. .)))
There is a difference in the manner in which the proteins are sent to the endoplasmic reticulum and to the other organelles .
(ROOT (S (NP (DT The) (JJ endoplasmic) (NN reticulum)) (VP (VBZ is) (NP (NP (DT the) (NN name)) (PP (IN of) (NP (NP (DT the) (NN organelle)) (SBAR (WHNP (WDT that)) (S (VP (VBZ helps) (VP (VB make) (CC and) (VB transport) (NP (NNS proteins) (CC and) (NNS lipids)))))))))) (. .)))