( ( The genome ) ( ( ( delineates and ) ( ( , ( ( with ( ( the ( associated apparatus ) ) ( in ( the cell ) ) ) ) , ) ) ( makes ( ( all ( the proteins ) ) ( used ( in ( an organism ) ) ) ) ) ) ) . ) )
(ROOT (S (NP (DT The) (NN genome)) (VP (VP (VBZ delineates)) (CC and) (VP (PRN (, ,) (PP (IN with) (NP (NP (DT the) (JJ associated) (NN apparatus)) (PP (IN in) (NP (DT the) (NN cell))))) (, ,)) (VBZ makes) (NP (NP (PDT all) (DT the) (NNS proteins)) (VP (VBN used) (PP (IN in) (NP (DT an) (NN organism))))))) (. .)))
The genome delineates and, with the associated apparatus in the cell, makes all the proteins used in an organism.
(ROOT (S (NP (NNPS Proteins)) (VP (VBP travel) (PP (TO to) (NP (DT the) (JJ golgi) (NN apparatus))) (S (VP (TO to) (VP (VB be) (VP (VBN modified) (PP (IN for) (NP (NP (DT the) (JJ specific) (NN job)) (SBAR (S (NP (PRP they)) (VP (MD will) (VP (VB do)))))))))))) (. .)))