<BUG>fileImporter = new FileImporter(this, waitingHandler, analysis, shotgunProtocol, identificationParameters, metrics);fileImporter.importFiles(idFiles, spectrumFiles, processingPreferences, spectrumCountingPreferences, projectDetails, backgroundThread);</BUG><CONTEXT>waitingHandler.appendReportEndLine();objectsCache = new ObjectsCache();objectsCache.setAutomatedMemoryManagement(true);ProteomicAnalysis analysis = experiment.getAnalysisSet(sample).getProteomicAnalysis(replicateNumber);analysis.addIdentificationResults(IdentificationMethod.MS2_IDENTIFICATION, new Ms2Identification(getIdentificationReference()));<extra_id_0>}public ObjectsCache getCache() {return objectsCache;</CONTEXT>
fileImporter = new FileImporter(this, waitingHandler, analysis, identificationParameters, metrics);fileImporter.importFiles(idFiles, spectrumFiles, processingPreferences, spectrumCountingPreferences, projectDetails, backgroundThread);