Individual identification is essential to animal behavior and ecology research and is of significant importance for protecting endangered species. Red pandas, among the world's rarest animals, are currently identified mainly by visual inspection and microelectronic chips, which are costly and inefficient. Motivated by recent advancement in computer-vision-based animal identification, in this paper, we propose an automatic framework for identifying individual red pandas based on their face images. We implement the framework by exploring well-established deep learning models with necessary adaptation for effectively dealing with red panda images. Based on a database of red panda images constructed by ourselves, we evaluate the effectiveness of the proposed automatic individual red panda identification method. The evaluation results show the promising potential of automatically recognizing individual red pandas from their faces. We are going to release our database and model in the public domain to promote the research on automatic animal identification and particularly on the technique for protecting red pandas.
We present a new method of primate face recognition, and evaluate this method on several endangered primates, including golden monkeys, lemurs, and chimpanzees. The three datasets contain a total of 11,637 images of 280 individual primates from 14 species. Primate face recognition performance is evaluated using two existing state-of-the-art open-source systems, (i) FaceNet and (ii) SphereFace, (iii) a lemur face recognition system from literature, and (iv) our new convolutional neural network (CNN) architecture called PrimNet. Three recognition scenarios are considered: verification (1:1 comparison), and both open-set and closed-set identification (1:N search). We demonstrate that PrimNet outperforms all of the other systems in all three scenarios for all primate species tested. Finally, we implement an Android application of this recognition system to be assist primate researchers and conservationists in the wild for individual recognition of primates. In order to monitor an animal population and to track individual animals in a non-invasive way, identification of individual animals based on certain distinctive characteristics is necessary. In this study, automatic image-based individual identification of the endangered Saimaa ringed seal (Phoca hispida saimensis) is considered. Ringed seals have a distinctive permanent pelage pattern that is unique to each individual. This can be used as a basis for the identification process. The authors propose a framework that starts with segmentation of the seal from the background and proceeds to various post-processing steps to make the pelage pattern more visible and the identification easier. Finally, two existing species independent individual identification methods are compared with a challenging data set of Saimaa ringed seal images. The results show that the segmentation and proposed post-processing steps increase the identification performance. An automatic procedure to identification Holstein dairy cows using tailhead images is proposed.Zernike moments are extracted and used as a shape descriptor of object features.Two groups of feature and different state-of-the-art classifiers are compared.The proposed method aims to precision livestock farming, especially, the individual identification in BCS evaluation system. The implementation of dairy cow identification will be of great significance in precision animal management based on computer vision. In this study, a computer vision technique to identify the individual dairy cows automatically was proposed and evaluated. The tailhead image, which was used as a Region of Interest (ROI), was captured in a dairy farm. Zernike moments were used as descriptors of shape characteristics for the white pattern on the ROI. Two groups of Zernike moments were extracted from the preprocessed image and classified using four alternative classifiers, namely, linear discriminant analysis (LDA), quadratic discriminant analysis (QDA), artificial neural network (ANN) and support vector machines (SVM). The QDA classifier had the highest value, 99.7 , while the SVM classifier had the highest precision, 99.6 . Comprehensively, the QDA and SVM classifiers presented the best performance, with equal F1 score of 0.995. These results show that the low-order Zernike moment feature, along with the QDA and SVM algorithms is an effective approach for individual dairy cow identification and has significant applications in precision animal management. Long-term research of known individuals is critical for understanding the demographic and evolutionary processes that influence natural populations. Current methods for individual identification of many animals include capture and tagging techniques and or researcher knowledge of natural variation in individual phenotypes. These methods can be costly, time-consuming, and may be impractical for larger-scale, population-level studies. Accordingly, for many animal lineages, long-term research projects are often limited to only a few taxa. Lemurs, a mammalian lineage endemic to Madagascar, are no exception. Long-term data needed to address evolutionary questions are lacking for many species. This is, at least in part, due to difficulties collecting consistent data on known individuals over long periods of time. Here, we present a new method for individual identification of lemurs (LemurFaceID). LemurFaceID is a computer-assisted facial recognition system that can be used to identify individual lemurs based on photographs. LemurFaceID was developed using patch-wise Multiscale Local Binary Pattern features and modified facial image normalization techniques to reduce the effects of facial hair and variation in ambient lighting on identification. We trained and tested our system using images from wild red-bellied lemurs (Eulemur rubriventer) collected in Ranomafana National Park, Madagascar. Across 100 trials, with different partitions of training and test sets, we demonstrate that the LemurFaceID can achieve 98.7 ± 1.81 accuracy (using 2-query image fusion) in correctly identifying individual lemurs. Our results suggest that human facial recognition techniques can be modified for identification of individual lemurs based on variation in facial patterns. LemurFaceID was able to identify individual lemurs based on photographs of wild individuals with a relatively high degree of accuracy. This technology would remove many limitations of traditional methods for individual identification. Once optimized, our system can facilitate long-term research of known individuals by providing a rapid, cost-effective, and accurate method for individual identification. Abstract Identification of individual livestock such as pigs and cows has become a pressing issue in recent years as intensification practices continue to be adopted and precise objective measurements are required (e.g. weight). Current best practice involves the use of RFID tags which are time-consuming for the farmer and distressing for the animal to fit. To overcome this, non-invasive biometrics are proposed by using the face of the animal. We test this in a farm environment, on 10 individual pigs using three techniques adopted from the human face recognition literature: Fisherfaces, the VGG-Face pre-trained face convolutional neural network (CNN) model and our own CNN model that we train using an artificially augmented data set. Our results show that accurate individual pig recognition is possible with accuracy rates of 96.7 on 1553 images. Class Activated Mapping using Grad-CAM is used to show the regions that our network uses to discriminate between pigs. This paper discusses the automated visual identification of individual great white sharks from dorsal fin imagery. We propose a computer vision photo ID system and report recognition results over a database of thousands of unconstrained fin images. To the best of our knowledge this line of work establishes the first fully automated contour-based visual ID system in the field of animal biometrics. The approach put forward appreciates shark fins as textureless, flexible and partially occluded objects with an individually characteristic shape. In order to recover animal identities from an image we first introduce an open contour stroke model, which extends multi-scale region segmentation to achieve robust fin detection. Secondly, we show that combinatorial, scale-space selective fingerprinting can successfully encode fin individuality. We then measure the species-specific distribution of visual individuality along the fin contour via an embedding into a global fin space'. Exploiting this domain, we finally propose a non-linear model for individual animal recognition and combine all approaches into a fine-grained multi-instance framework. We provide a system evaluation, compare results to prior work, and report performance and properties in detail.  African penguins (Spheniscus demersus) carry a pattern of black spots on their chests that does not change from season to season during their adult life. Further, as far as we can tell, no two penguins have exactly the same pattern. We have developed a real-time system that can confidently locate African penguins whose chests are visible within video sequences or still images. An extraction of the chest spot pattern allows the generation of a unique biometrical identifier for each penguin. Using these identifiers an authentication of filmed or photographed African penguins against a population database can be performed. This paper provides a detailed technical description of the developed system and outlines the scope and the conditions of application  The increasing growth of the world trade and growing concerns of food safety by consumers need a cutting-edge animal identification and traceability systems as the simple recording and reading of tags-based systems are only effective in eradication programs of national disease. Animal biometric-based solutions, e.g. muzzle imaging system, offer an effective and secure, and rapid method of addressing the requirements of animal identification and traceability systems. In this paper, we propose a robust and fast cattle identification approach. This approach makes use of Local Binary Pattern (LBP) to extract local invariant features from muzzle print images. We also applied different classifiers including Nearest Neighbor, Naive Bayes, SVM and KNN for cattle identification. The experimental results showed that our approach is superior than existed works as ours achieves 99,5 identification accuracy. In addition, the results proved that our proposed method achieved this high accuracy even if the testing images are rotated in various angels or occluded with different parts of their sizes.