Domain specific (dis-)similarity or proximity measures used e.g. in alignment algorithms of sequence data, are popular to analyze complex data objects and to cover domain specific data properties. Without an underlying vector space these data are given as pairwise (dis-)similarities only. The few available methods for such data focus widely on similarities and do not scale to large data sets. Kernel methods are very effective for metric similarity matrices, also at large scale, but costly transformations are necessary starting with non-metric (dis-) similarities. We propose an integrative combination of Nystroem approximation, potential double centering and eigenvalue correction to obtain valid kernel matrices at linear costs in the number of samples. By the proposed approach effective kernel approaches, become accessible. Experiments with several larger (dis-)similarity data sets show that the proposed method achieves much better runtime performance than the standard strategy while keeping competitive model accuracy. The main contribution is an efficient and accurate technique, to convert (potentially non-metric) large scale dissimilarity matrices into approximated positive semi-definite kernel matrices at linear costs.
 Kernel functions have become an extremely popular tool in machine learning, with an attractive theory as well. This theory views a kernel as implicitly mapping data points into a possibly very high dimensional space, and describes a kernel function as being good for a given learning problem if data is separable by a large margin in that implicit space. However, while quite elegant, this theory does not directly correspond to one's intuition of a good kernel as a good similarity function. Furthermore, it may be difficult for a domain expert to use the theory to help design an appropriate kernel for the learning task at hand since the implicit mapping may not be easy to calculate. Finally, the requirement of positive semi-definiteness may rule out the most natural pairwise similarity functions for the given problem domain.In this work we develop an alternative, more general theory of learning with similarity functions (i.e., sufficient conditions for a similarity function to allow one to learn well) that does not require reference to implicit spaces, and does not require the function to be positive semi-definite (or even symmetric). Our results also generalize the standard theory in the sense that any good kernel function under the usual definition can be shown to also be a good similarity function under our definition (though with some loss in the parameters). In this way, we provide the first steps towards a theory of kernels that describes the effectiveness of a given kernel function in terms of natural similarity-based properties. We address the problem of general supervised learning when data can only be accessed through an (indefinite) similarity function between data points. Existing work on learning with indefinite kernels has concentrated solely on binary multi-class classification problems. We propose a model that is generic enough to handle any supervised learning task and also subsumes the model previously proposed for classification. We give a "goodness" criterion for similarity functions w.r.t. a given supervised learning task and then adapt a well-known landmarking technique to provide efficient algorithms for supervised learning using "good" similarity functions. We demonstrate the effectiveness of our model on three important super-vised learning problems: a) real-valued regression, b) ordinal regression and c) ranking where we show that our method guarantees bounded generalization error. Furthermore, for the case of real-valued regression, we give a natural goodness definition that, when used in conjunction with a recent result in sparse vector recovery, guarantees a sparse predictor with bounded generalization error. Finally, we report results of our learning algorithms on regression and ordinal regression tasks using non-PSD similarity functions and demonstrate the effectiveness of our algorithms, especially that of the sparse landmark selection algorithm that achieves significantly higher accuracies than the baseline methods while offering reduced computational costs. We consider the problem of classification using similarity distance functions over data. Specifically, we propose a framework for defining the goodness of a (dis)similarity function with respect to a given learning task and propose algorithms that have guaranteed generalization properties when working with such good functions. Our framework unifies and generalizes the frameworks proposed by [Balcan-Blum ICML 2006] and [ ICML 2007]. An attractive feature of our framework is its adaptability to data - we do not promote a fixed notion of goodness but rather let data dictate it. We show, by giving theoretical guarantees that the goodness criterion best suited to a problem can itself be learned which makes our approach applicable to a variety of domains and problems. We propose a landmarking-based approach to obtaining a classifier from such learned goodness criteria. We then provide a novel diversity based heuristic to perform task-driven selection of landmark points instead of random selection. We demonstrate the effectiveness of our goodness criteria learning method as well as the landmark selection heuristic on a variety of similarity-based learning datasets and benchmark UCI datasets on which our method consistently outperforms existing approaches by a significant margin.