Recently, there has been much interest in spectral approaches to learning manifolds---so-called kernel eigenmap methods. These methods have had some successes, but their applicability is limited because they are not robust to noise. To address this limitation, we look at two-manifold problems, in which we simultaneously reconstruct two related manifolds, each representing a different view of the same data. By solving these interconnected learning problems together and allowing information to flow between them, two-manifold algorithms are able to succeed where a non-integrated approach would fail: each view allows us to suppress noise in the other, reducing bias in the same way that an instrumental variable allows us to remove bias in a linear dimensionality reduction problem. We propose a class of algorithms for two-manifold problems, based on spectral decomposition of cross-covariance operators in Hilbert space. Finally, we discuss situations where two-manifold problems are useful, and demonstrate that solving a two-manifold problem can aid in learning a nonlinear dynamical system from limited data.
We propose maximum covariance unfolding (MCU), a manifold learning algorithm for simultaneous dimensionality reduction of data from different input modalities. Given high dimensional inputs from two different but naturally aligned sources, MCU computes a common low dimensional embedding that maximizes the cross-modal (inter-source) correlations while preserving the local (intra-source) distances. In this paper, we explore two applications of MCU. First we use MCU to analyze EEG-fMRI data, where an important goal is to visualize the fMRI voxels that are most strongly correlated with changes in EEG traces. To perform this visualization, we augment MCU with an additional step for metric learning in the high dimensional voxel space. Second, we use MCU to perform cross-modal retrieval of matched image and text samples from Wikipedia. To manage large applications of MCU, we develop a fast implementation based on ideas from spectral graph theory. These ideas transform the original problem for MCU, one of semidefinite programming, into a simpler problem in semidefinite quadratic linear programming.