import make_apex_cubes
from os.path import join

root = '/scratch/aginsbur/apex/'
rawpath = join(root,'raw/')
reducedpath = join(root,'reduced/')
make_apex_cubes.june2013datapath = rawpath
make_apex_cubes.june2013path = join(reducedpath,'june2013/')
make_apex_cubes.h2copath = join(reducedpath, 'h2co_cubes/')
make_apex_cubes.mergepath = join(reducedpath, 'merged_datasets/')
make_apex_cubes.aorawpath = rawpath
make_apex_cubes.aopath = join(reducedpath, '2010_reduced/')
make_apex_cubes.diagplotdir = join(root,'diagnostic_plots/')

make_apex_cubes.do_everything()

add cleese pipeline runner