from calculation import Calculation, Bootstrapping, PathSampling

from ensemble import Ensemble, EnsembleCombination, EnsembleFactory, \
    EntersXEnsemble, EmptyEnsemble, ExitsXEnsemble, FullEnsemble, \
    HitXEnsemble, InXEnsemble, OutXEnsemble, WrappedEnsemble, \
    BackwardPrependedTrajectoryEnsemble, ForwardAppendedTrajectoryEnsemble, \
    LeaveXEnsemble, LengthEnsemble, LoadedEnsemble, NegatedEnsemble, \
    ReversedTrajectoryEnsemble, SequentialEnsemble, VolumeEnsemble, \
    SequentialEnsemble, AndEnsemble, OrEnsemble, XorEnsemble, SubEnsemble, \
    SingleFrameEnsemble, MinusInterfaceEnsemble



from snapshot import Snapshot, Configuration, Momentum

from trajectory import Trajectory
from sample import Sample, SampleSet

from orderparameter import OP_Function, OP_MD_Function, OP_Featurizer, \
    OP_RMSD_To_Lambda, OP_Volume, OrderParameter

from pathmover import (
    BackwardShootMover, MinusMover, RandomChoiceMover, MoveDetails, \
    ForwardShootMover, PathMover, PathMoverFactory, PathReversalMover, \
    ReplicaExchangeMover, ConditionalSequentialMover, EnsembleHopMover, \
    PartialAcceptanceSequentialMover, ReplicaIDChange, SequentialMover
    #, BootstrapPromotionMove
)

from shooting import ShootingPoint, ShootingPointSelector, UniformSelector, \
    GaussianBiasSelector, FirstFrameSelector, FinalFrameSelector

from dynamics_engine import DynamicsEngine

from openmm_engine import OpenMMEngine

from visualize import PathTreeBuilder

from volume import Volume, VolumeCombination, VolumeFactory, VoronoiVolume, \
    EmptyVolume, FullVolume, LambdaVolume, LambdaVolumePeriodic, AndVolume, \
    OrVolume, XorVolume, SubVolume

from todict import ObjectJSON, restores_as_full_object, \
    restores_as_stub_object, class_list

from tools import empty_snapshot_from_openmm_topology, snapshot_from_pdb, \
    to_openmm_topology, trajectory_from_mdtraj, units_from_snapshot

from topology import ToyTopology, MDTrajTopology, Topology

from toy_dynamics.toy_pes import Gaussian, HarmonicOscillator, LinearSlope, \
    OuterWalls, Toy_PES, Toy_PES_Add, Toy_PES_Sub

from toy_dynamics.toy_engine import ToyEngine

from toy_dynamics.toy_integrators import LangevinBAOABIntegrator, \
    LeapfrogVerletIntegrator

from calculation import Calculation, Bootstrapping, PathSampling

from ensemble import Ensemble, EnsembleCombination, EnsembleFactory, \
    EntersXEnsemble, EmptyEnsemble, ExitsXEnsemble, FullEnsemble, \
    HitXEnsemble, InXEnsemble, OutXEnsemble, WrappedEnsemble, \
    BackwardPrependedTrajectoryEnsemble, ForwardAppendedTrajectoryEnsemble, \
    LeaveXEnsemble, LengthEnsemble, LoadedEnsemble, NegatedEnsemble, \
    ReversedTrajectoryEnsemble, SequentialEnsemble, VolumeEnsemble, \
    SequentialEnsemble, AndEnsemble, OrEnsemble, XorEnsemble, SubEnsemble, \
    SingleFrameEnsemble, MinusInterfaceEnsemble

from snapshot import Snapshot, Configuration, Momentum

from trajectory import Trajectory
from sample import Sample, SampleSet

from orderparameter import OP_Function, OP_MD_Function, OP_Featurizer, \
    OP_RMSD_To_Lambda, OP_Volume, OrderParameter

from pathmover import (
    BackwardShootMover, MinusMover, RandomChoiceMover, MoveDetails, \
    ForwardShootMover, PathMover, PathMoverFactory, PathReversalMover, \
    ReplicaExchangeMover, ConditionalSequentialMover, EnsembleHopMover, \
    PartialAcceptanceSequentialMover, ReplicaIDChange, SequentialMover
    #, BootstrapPromotionMove
)

from shooting import ShootingPoint, ShootingPointSelector, UniformSelector, \
    GaussianBiasSelector, FirstFrameSelector, FinalFrameSelector

from dynamics_engine import DynamicsEngine

from openmm_engine import OpenMMEngine

from volume import Volume, VolumeCombination, VolumeFactory, VoronoiVolume, \
    EmptyVolume, FullVolume, LambdaVolume, LambdaVolumePeriodic, AndVolume, \
    OrVolume, XorVolume, SubVolume

from todict import ObjectJSON, restores_as_full_object, \
    restores_as_stub_object, class_list

from tools import empty_snapshot_from_openmm_topology, snapshot_from_pdb, \
    to_openmm_topology, trajectory_from_mdtraj, units_from_snapshot

from topology import ToyTopology, MDTrajTopology, Topology

from toy_dynamics.toy_pes import Gaussian, HarmonicOscillator, LinearSlope, \
    OuterWalls, Toy_PES, Toy_PES_Add, Toy_PES_Sub

from toy_dynamics.toy_engine import ToyEngine

from toy_dynamics.toy_integrators import LangevinBAOABIntegrator, \
    LeapfrogVerletIntegrator

remove visualize from init to make it non svgwrite