EC2 Default User commited on
Commit
20e855d
1 Parent(s): 3a4a990

Change labels from int to float

Browse files
Files changed (5) hide show
  1. README.md +1 -1
  2. deeploc-test.parquet +2 -2
  3. deeploc-train.parquet +2 -2
  4. deploc-val.parquet +2 -2
  5. prep.py +1 -1
README.md CHANGED
@@ -13,7 +13,7 @@ Data downloaded and processed using the following Python script:
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  import pandas as pd
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  df = pd.read_csv('https://services.healthtech.dtu.dk/services/DeepLoc-2.0/data/Swissprot_Train_Validation_dataset.csv').drop(['Unnamed: 0', 'Partition'], axis=1)
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- df['labels'] = df[['Cell membrane', 'Cytoplasm','Endoplasmic reticulum', 'Extracellular', 'Golgi apparatus', 'Lysosome/Vacuole', 'Mitochondrion', 'Nucleus', 'Peroxisome', 'Plastid']].astype('int8').values.tolist()
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  df['Membrane'] = df['Membrane'].astype('int8')
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  df = df[['Kingdom', 'ACC', 'Sequence','Membrane','labels']]
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  import pandas as pd
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  df = pd.read_csv('https://services.healthtech.dtu.dk/services/DeepLoc-2.0/data/Swissprot_Train_Validation_dataset.csv').drop(['Unnamed: 0', 'Partition'], axis=1)
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+ df['labels'] = df[['Cell membrane', 'Cytoplasm','Endoplasmic reticulum', 'Extracellular', 'Golgi apparatus', 'Lysosome/Vacuole', 'Mitochondrion', 'Nucleus', 'Peroxisome', 'Plastid']].astype('float16').values.tolist()
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  df['Membrane'] = df['Membrane'].astype('int8')
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  df = df[['Kingdom', 'ACC', 'Sequence','Membrane','labels']]
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deeploc-test.parquet CHANGED
@@ -1,3 +1,3 @@
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  version https://git-lfs.github.com/spec/v1
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+ oid sha256:d48167a2babeb7074f6e2396cc637e026a0e65586efb8c71cfc8e9e2115f23fb
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+ size 1631338
deeploc-train.parquet CHANGED
@@ -1,3 +1,3 @@
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  version https://git-lfs.github.com/spec/v1
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+ size 12865785
deploc-val.parquet CHANGED
@@ -1,3 +1,3 @@
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  version https://git-lfs.github.com/spec/v1
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- size 1630148
 
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prep.py CHANGED
@@ -1,7 +1,7 @@
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  import pandas as pd
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  df = pd.read_csv('https://services.healthtech.dtu.dk/services/DeepLoc-2.0/data/Swissprot_Train_Validation_dataset.csv').drop(['Unnamed: 0', 'Partition'], axis=1)
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- df['labels'] = df[['Cell membrane', 'Cytoplasm','Endoplasmic reticulum', 'Extracellular', 'Golgi apparatus', 'Lysosome/Vacuole', 'Mitochondrion', 'Nucleus', 'Peroxisome', 'Plastid']].astype('int8').values.tolist()
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  df['Membrane'] = df['Membrane'].astype('int8')
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  df = df[['Kingdom', 'ACC', 'Sequence','Membrane','labels']]
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  import pandas as pd
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  df = pd.read_csv('https://services.healthtech.dtu.dk/services/DeepLoc-2.0/data/Swissprot_Train_Validation_dataset.csv').drop(['Unnamed: 0', 'Partition'], axis=1)
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+ df['labels'] = df[['Cell membrane', 'Cytoplasm','Endoplasmic reticulum', 'Extracellular', 'Golgi apparatus', 'Lysosome/Vacuole', 'Mitochondrion', 'Nucleus', 'Peroxisome', 'Plastid']].astype('float16').values.tolist()
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  df['Membrane'] = df['Membrane'].astype('int8')
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  df = df[['Kingdom', 'ACC', 'Sequence','Membrane','labels']]
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