Hi Chris,   I have managed to reproduce your original issue by further testing the AppPortal configuration. I found that if you remove a farm from the configuration AppPortal will no longer delete the DI icons for that farm. The switches we have discussed, both /AutoDelete and /Uninstall, will only remove the icons for farms that are currently configured on the AppPortal client.   I therefore believe the legacy icons you are seeing on your desktop belong to a farm configuration which has since been removed. For removing these one suggestion is to recreate the farm configuration so that /AutoDelete can clean up as it goes. Alternatively you may decide to manually remove them using a login script, once removed they will not return since only your current configured farms will populate the icons and these will be removed on AppPortal exit.   There is also a solution in our knowledgebase that documents all the switches for AppPortal please follow this link [URL]   I hope this helps David
The admin guide suggests the following: An AppPortal command line parameter, /autodelete, is available. This command line parameter removes all farm definitions and desktop integrated shortcuts upon exiting AppPortal, so that any autoload farms are reloaded.  This does not seem to work when you have more than one farm loaded and using Desktop Integrated mode. I am using the registry key option to manage the loading of multiple farm entries. When you have multiple farms it is only possible to set one farm as the default farm and connected. The  integrated shortcuts icons placed on the user's desktop will remail even if the farm is not connected.  Initially the user has to connect to the other farms using the Session Connect/Disconnect option, and once the  integrated shortcuts icons are placed on the desktop, a user only needs to click on the integrated shortcut icon to force the reconnection and start the application.  The problem is that I currently have several Farms that the users can connected to and as a result users have  integrated shortcuts icons onto their desktops for all the farms. I now want to add a new Farm an would like to remove all the  integrated shortcuts icons from the original farms, only leaving the  integrated shortcuts icons for the new farm, but leaving the original farms available but not connected.  I thought the /autodelete parameter would do this. However the /autodelete parameter only removes the icons from the default farm. This means that when I set the new default farm to be the new farm, it does not possible to remove the published icons that belong to the other farms except by using Connect/Disconnect option in the Quest client from the system tray.  Any suggestions as to how to remove these unwanted desktop integrated shortcuts icons automatically?
How to delete integrated shortcuts icons from desktop for multiple farms