Turns out the solution was a BIOS reinstall on the PERC H200. During the IT flashing process, the BIOS is erased so the card does not boot along with the system. When booting from a USB the OS initializes the card so I could see all the disks connected through the card, but in order to boot from a disk connected to the card, it needs to be initialized during POST. Boot into FreeDOS and run 'sas2flsh -o -b mptsas2.bin'
I just installed Debian 9 on an SSD and tried to boot the system. In BIOS there are no available boot devices shown and in the UEFI boot device options it says " *Unavailable: debian" (highlighted in blue). I am using a PERC H200 flashed to IT mode. I've tried the installation multiple times with no luck and can't seem to find any documentation on this issue. Any suggestions?
R510 Will Not Boot