def example_gd_file_contents() -> List[str]:
    expected = ['SNP\t1\t13\t1\t598843\tG\tgene_name=JNAKOBFD_00523/JNAKOBFD_00524\tgene_position=intergenic (+4/+95)\tgene_product=[locus_tag=Bcen2424_2337] [db_xref=InterPro:IPR001734] [protein=Na+/solute symporter][protein_id=ABK09088.1] [location=complement(2599928..2601478)][gbkey=CDS]/[locus_tag=Bcen2424_2336] [db_xref=InterPro:IPR004360,InterPro:IPR009725] [protein=Glyoxalase/bleomycin resistance protein/dioxygenase] [protein_id=ABK09087.1][location=2599374..2599829] [gbkey=CDS]\tgenes_promoter=JNAKOBFD_00524\thtml_gene_name=<i>JNAKOBFD_00523</i>&nbsp;&rarr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_00524</i>\tlocus_tag=–/–\tmutation_category=snp_intergenic\tsnp_type=intergenic', 'INS\t2\t16\t1\t1137319\tC\tgene_name=JNAKOBFD_01012\tgene_position=coding (1836/1887 nt)\tgene_product=[locus_tag=Bcen2424_6766] [db_xref=InterPro:IPR002202] [protein=PE-PGRS family protein][protein_id=ABK13495.1] [location=complement(1015331..1019638)][gbkey=CDS]\tgene_strand=<\tgenes_overlapping=JNAKOBFD_01012\thtml_gene_name=<i>JNAKOBFD_01012</i>&nbsp;&larr;\tmutation_category=small_indel\trepeat_length=1\trepeat_new_copies=6\trepeat_ref_copies=5\trepeat_seq=C', 'SNP\t3\t38\t1\t1301313\tA\taa_new_seq=L\taa_position=759\taa_ref_seq=L\tcodon_new_seq=TTG\tcodon_number=759\tcodon_position=1\tcodon_ref_seq=CTG\tgene_name=JNAKOBFD_01153\tgene_position=2275\tgene_product=[locus_tag=Bcen2424_5983] [db_xref=InterPro:IPR005594,InterPro:IPR006162,InterPro:IPR008635,InterPro:IPR008640][protein=YadA C-terminal domain protein][protein_id=ABK12716.1] [location=complement(124247..128662)][gbkey=CDS]\tgene_strand=<\tgenes_overlapping=JNAKOBFD_01153\thtml_gene_name=<i>JNAKOBFD_01153</i>&nbsp;&larr;\tmutation_category=snp_synonymous\tsnp_type=synonymous\ttransl_table=1', 'SNP\t4\t39\t1\t1301317\tC\taa_new_seq=T\taa_position=757\taa_ref_seq=T\tcodon_new_seq=ACG\tcodon_number=757\tcodon_position=3\tcodon_ref_seq=ACC\tgene_name=JNAKOBFD_01153\tgene_position=2271\tgene_product=[locus_tag=Bcen2424_5983] [db_xref=InterPro:IPR005594,InterPro:IPR006162,InterPro:IPR008635,InterPro:IPR008640][protein=YadA C-terminal domain protein][protein_id=ABK12716.1] [location=complement(124247..128662)][gbkey=CDS]\tgene_strand=<\tgenes_overlapping=JNAKOBFD_01153\thtml_gene_name=<i>JNAKOBFD_01153</i>&nbsp;&larr;\tmutation_category=snp_synonymous\tsnp_type=synonymous\ttransl_table=1', 'SNP\t5\t56\t2\t783559\tG\tgene_name=JNAKOBFD_03573/JNAKOBFD_03574\tgene_position=intergenic (+102/-470)\tgene_product=[locus_tag=Bcen2424_0544] [db_xref=InterPro:IPR001753] [protein=short chain enoyl-CoA hydratase] [protein_id=ABK07298.1] [location=605087..605863][gbkey=CDS]/16S ribosomal RNA\tgenes_promoter=JNAKOBFD_03574\thtml_gene_name=<i>JNAKOBFD_03573</i>&nbsp;&rarr;&nbsp;/&nbsp;&rarr;&nbsp;<i>JNAKOBFD_03574</i>\tlocus_tag=–/–\tmutation_category=snp_intergenic\tsnp_type=intergenic', 'SNP\t6\t58\t2\t1595621\tT\taa_new_seq=V\taa_position=111\taa_ref_seq=G\tcodon_new_seq=GTG\tcodon_number=111\tcodon_position=2\tcodon_ref_seq=GGG\tgene_name=JNAKOBFD_04336\tgene_position=332\tgene_product=[locus_tag=Bcen2424_2424] [db_xref=InterPro:IPR003754,InterPro:IPR007470] [protein=protein of unknown function DUF513, hemX] [protein_id=ABK09174.1][location=complement(2688435..2690405)] [gbkey=CDS]\tgene_strand=>\tgenes_overlapping=JNAKOBFD_04336\thtml_gene_name=<i>JNAKOBFD_04336</i>&nbsp;&rarr;\tmutation_category=snp_nonsynonymous\tsnp_type=nonsynonymous\ttransl_table=1', 'SNP\t7\t59\t2\t1595623\tA\taa_new_seq=I\taa_position=112\taa_ref_seq=F\tcodon_new_seq=ATC\tcodon_number=112\tcodon_position=1\tcodon_ref_seq=TTC\tgene_name=JNAKOBFD_04336\tgene_position=334\tgene_product=[locus_tag=Bcen2424_2424] [db_xref=InterPro:IPR003754,InterPro:IPR007470] [protein=protein of unknown function DUF513, hemX] [protein_id=ABK09174.1][location=complement(2688435..2690405)] [gbkey=CDS]\tgene_strand=>\tgenes_overlapping=JNAKOBFD_04336\thtml_gene_name=<i>JNAKOBFD_04336</i>&nbsp;&rarr;\tmutation_category=snp_nonsynonymous\tsnp_type=nonsynonymous\ttransl_table=1', 'SNP\t8\t61\t2\t2478091\tA\tgene_name=JNAKOBFD_05108/JNAKOBFD_05109\tgene_position=intergenic (-161/+83)\tgene_product=[locus_tag=Bcen2424_4005] [db_xref=InterPro:IPR007138] [protein=Antibiotic biosynthesis monooxygenase] [protein_id=ABK10741.1] [location=893139..893474][gbkey=CDS]/[locus_tag=Bcen2424_4004] [db_xref=InterPro:IPR002198,InterPro:IPR002347] [protein=short-chain dehydrogenase/reductase SDR] [protein_id=ABK10740.1][location=892176..892895] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_05108</i>&nbsp;&larr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_05109</i>\tlocus_tag=–/–\tmutation_category=snp_intergenic\tsnp_type=intergenic', 'SNP\t9\t62\t2\t2478103\tC\tgene_name=JNAKOBFD_05108/JNAKOBFD_05109\tgene_position=intergenic (-173/+71)\tgene_product=[locus_tag=Bcen2424_4005] [db_xref=InterPro:IPR007138] [protein=Antibiotic biosynthesis monooxygenase] [protein_id=ABK10741.1] [location=893139..893474][gbkey=CDS]/[locus_tag=Bcen2424_4004] [db_xref=InterPro:IPR002198,InterPro:IPR002347] [protein=short-chain dehydrogenase/reductase SDR] [protein_id=ABK10740.1][location=892176..892895] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_05108</i>&nbsp;&larr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_05109</i>\tlocus_tag=–/–\tmutation_category=snp_intergenic\tsnp_type=intergenic', 'SNP\t10\t75\t3\t181113\tA\taa_new_seq=G\taa_position=368\taa_ref_seq=G\tcodon_new_seq=GGT\tcodon_number=368\tcodon_position=3\tcodon_ref_seq=GGC\tgene_name=JNAKOBFD_05752\tgene_position=1104\tgene_product=[locus_tag=Bcen2424_5364] [db_xref=InterPro:IPR000014,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR005829,InterPro:IPR013655][protein=methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor] [protein_id=ABK12097.1] [location=complement(2460320..2461864)][gbkey=CDS]\tgene_strand=<\tgenes_overlapping=JNAKOBFD_05752\thtml_gene_name=<i>JNAKOBFD_05752</i>&nbsp;&larr;\tmutation_category=snp_synonymous\tsnp_type=synonymous\ttransl_table=1', 'DEL\t11\t95\t5\t1\t1248\tgene_name=JNAKOBFD_06387\tgene_product=JNAKOBFD_06387\tgenes_inactivated=JNAKOBFD_06387\thtml_gene_name=<i>JNAKOBFD_06387</i>\tmutation_category=large_deletion', 'RA\t13\t.\t1\t598843\t0\tA\tG\tconsensus_score=20.7\tfrequency=1\tgene_name=JNAKOBFD_00523/JNAKOBFD_00524\tgene_position=intergenic (+4/+95)\tgene_product=[locus_tag=Bcen2424_2337] [db_xref=InterPro:IPR001734] [protein=Na+/solute symporter][protein_id=ABK09088.1] [location=complement(2599928..2601478)][gbkey=CDS]/[locus_tag=Bcen2424_2336] [db_xref=InterPro:IPR004360,InterPro:IPR009725] [protein=Glyoxalase/bleomycin resistance protein/dioxygenase] [protein_id=ABK09087.1][location=2599374..2599829] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_00523</i>&nbsp;&rarr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_00524</i>\tlocus_tag=–/–\tmajor_base=G\tmajor_cov=4/3\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/3\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tsnp_type=intergenic\ttotal_cov=4/3', 'RA\t16\t.\t1\t1137314\t1\t.\tC\taa_new_seq=G\taa_position=614\taa_ref_seq=V\tbias_e_value=5670690\tbias_p_value=0.804858\tcodon_new_seq=GGG\tcodon_number=614\tcodon_position=2\tcodon_ref_seq=GTG\tconsensus_score=13.5\tfisher_strand_p_value=0.444444\tfrequency=1\tgene_name=JNAKOBFD_01012\tgene_position=1841\tgene_product=[locus_tag=Bcen2424_6766] [db_xref=InterPro:IPR002202] [protein=PE-PGRS family protein][protein_id=ABK13495.1] [location=complement(1015331..1019638)][gbkey=CDS]\tgene_strand=<\thtml_gene_name=<i>JNAKOBFD_01012</i>&nbsp;&larr;\tks_quality_p_value=1\tmajor_base=C\tmajor_cov=5/3\tmajor_frequency=8.889e-01\tminor_base=G\tminor_cov=0/1\tnew_cov=5/3\tnew_seq=C\tpolymorphism_frequency=8.889e-01\tpolymorphism_score=-5.8\tprediction=consensus\tref_cov=0/0\tref_seq=A\tsnp_type=nonsynonymous\ttotal_cov=5/4\ttransl_table=1', 'RA\t38\t.\t1\t1301313\t0\tG\tA\taa_new_seq=L\taa_position=759\taa_ref_seq=L\tcodon_new_seq=TTG\tcodon_number=759\tcodon_position=1\tcodon_ref_seq=CTG\tconsensus_score=15.7\tfrequency=1\tgene_name=JNAKOBFD_01153\tgene_position=2275\tgene_product=[locus_tag=Bcen2424_5983] [db_xref=InterPro:IPR005594,InterPro:IPR006162,InterPro:IPR008635,InterPro:IPR008640][protein=YadA C-terminal domain protein][protein_id=ABK12716.1] [location=complement(124247..128662)][gbkey=CDS]\tgene_strand=<\thtml_gene_name=<i>JNAKOBFD_01153</i>&nbsp;&larr;\tmajor_base=A\tmajor_cov=4/4\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/4\tnew_seq=A\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tref_seq=G\tsnp_type=synonymous\ttotal_cov=4/4\ttransl_table=1', 'RA\t39\t.\t1\t1301317\t0\tG\tC\taa_new_seq=T\taa_position=757\taa_ref_seq=T\tcodon_new_seq=ACG\tcodon_number=757\tcodon_position=3\tcodon_ref_seq=ACC\tconsensus_score=14.0\tfrequency=1\tgene_name=JNAKOBFD_01153\tgene_position=2271\tgene_product=[locus_tag=Bcen2424_5983] [db_xref=InterPro:IPR005594,InterPro:IPR006162,InterPro:IPR008635,InterPro:IPR008640][protein=YadA C-terminal domain protein][protein_id=ABK12716.1] [location=complement(124247..128662)][gbkey=CDS]\tgene_strand=<\thtml_gene_name=<i>JNAKOBFD_01153</i>&nbsp;&larr;\tmajor_base=C\tmajor_cov=4/4\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/4\tnew_seq=C\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tref_seq=G\tsnp_type=synonymous\ttotal_cov=4/4\ttransl_table=1', 'RA\t56\t.\t2\t783559\t0\tA\tG\tconsensus_score=16.5\tfrequency=1\tgene_name=JNAKOBFD_03573/JNAKOBFD_03574\tgene_position=intergenic (+102/-470)\tgene_product=[locus_tag=Bcen2424_0544] [db_xref=InterPro:IPR001753] [protein=short chain enoyl-CoA hydratase] [protein_id=ABK07298.1] [location=605087..605863][gbkey=CDS]/16S ribosomal RNA\thtml_gene_name=<i>JNAKOBFD_03573</i>&nbsp;&rarr;&nbsp;/&nbsp;&rarr;&nbsp;<i>JNAKOBFD_03574</i>\tlocus_tag=–/–\tmajor_base=G\tmajor_cov=4/2\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/2\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tsnp_type=intergenic\ttotal_cov=4/2', 'RA\t58\t.\t2\t1595621\t0\tG\tT\taa_new_seq=V\taa_position=111\taa_ref_seq=G\tbias_e_value=7045580\tbias_p_value=1\tcodon_new_seq=GTG\tcodon_number=111\tcodon_position=2\tcodon_ref_seq=GGG\tconsensus_score=20.2\tfisher_strand_p_value=1\tfrequency=1\tgene_name=JNAKOBFD_04336\tgene_position=332\tgene_product=[locus_tag=Bcen2424_2424] [db_xref=InterPro:IPR003754,InterPro:IPR007470] [protein=protein of unknown function DUF513, hemX] [protein_id=ABK09174.1][location=complement(2688435..2690405)] [gbkey=CDS]\tgene_strand=>\thtml_gene_name=<i>JNAKOBFD_04336</i>&nbsp;&rarr;\tks_quality_p_value=1\tmajor_base=T\tmajor_cov=6/2\tmajor_frequency=8.889e-01\tminor_base=G\tminor_cov=1/0\tnew_cov=6/2\tnew_seq=T\tpolymorphism_frequency=8.889e-01\tpolymorphism_score=-5.9\tprediction=consensus\tref_cov=1/0\tref_seq=G\tsnp_type=nonsynonymous\ttotal_cov=7/2\ttransl_table=1', 'RA\t59\t.\t2\t1595623\t0\tT\tA\taa_new_seq=I\taa_position=112\taa_ref_seq=F\tbias_e_value=7045580\tbias_p_value=1\tcodon_new_seq=ATC\tcodon_number=112\tcodon_position=1\tcodon_ref_seq=TTC\tconsensus_score=18.7\tfisher_strand_p_value=1\tfrequency=1\tgene_name=JNAKOBFD_04336\tgene_position=334\tgene_product=[locus_tag=Bcen2424_2424] [db_xref=InterPro:IPR003754,InterPro:IPR007470] [protein=protein of unknown function DUF513, hemX] [protein_id=ABK09174.1][location=complement(2688435..2690405)] [gbkey=CDS]\tgene_strand=>\thtml_gene_name=<i>JNAKOBFD_04336</i>&nbsp;&rarr;\tks_quality_p_value=1\tmajor_base=A\tmajor_cov=6/2\tmajor_frequency=8.889e-01\tminor_base=T\tminor_cov=1/0\tnew_cov=6/2\tnew_seq=A\tpolymorphism_frequency=8.889e-01\tpolymorphism_score=-5.4\tprediction=consensus\tref_cov=1/0\tref_seq=T\tsnp_type=nonsynonymous\ttotal_cov=7/2\ttransl_table=1', 'RA\t61\t.\t2\t2478091\t0\tT\tA\tbias_e_value=4534860\tbias_p_value=0.643647\tconsensus_score=14.8\tfisher_strand_p_value=0.285714\tfrequency=1\tgene_name=JNAKOBFD_05108/JNAKOBFD_05109\tgene_position=intergenic (-161/+83)\tgene_product=[locus_tag=Bcen2424_4005] [db_xref=InterPro:IPR007138] [protein=Antibiotic biosynthesis monooxygenase] [protein_id=ABK10741.1] [location=893139..893474][gbkey=CDS]/[locus_tag=Bcen2424_4004] [db_xref=InterPro:IPR002198,InterPro:IPR002347] [protein=short-chain dehydrogenase/reductase SDR] [protein_id=ABK10740.1][location=892176..892895] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_05108</i>&nbsp;&larr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_05109</i>\tks_quality_p_value=1\tlocus_tag=–/–\tmajor_base=A\tmajor_cov=1/5\tmajor_frequency=8.571e-01\tminor_base=T\tminor_cov=1/0\tnew_cov=1/5\tpolymorphism_frequency=8.571e-01\tpolymorphism_score=-5.3\tprediction=consensus\tref_cov=1/0\tsnp_type=intergenic\ttotal_cov=2/5', 'RA\t62\t.\t2\t2478103\t0\tG\tC\tbias_e_value=4928640\tbias_p_value=0.699537\tconsensus_score=12.3\tfisher_strand_p_value=0.333333\tfrequency=1\tgene_name=JNAKOBFD_05108/JNAKOBFD_05109\tgene_position=intergenic (-173/+71)\tgene_product=[locus_tag=Bcen2424_4005] [db_xref=InterPro:IPR007138] [protein=Antibiotic biosynthesis monooxygenase] [protein_id=ABK10741.1] [location=893139..893474][gbkey=CDS]/[locus_tag=Bcen2424_4004] [db_xref=InterPro:IPR002198,InterPro:IPR002347] [protein=short-chain dehydrogenase/reductase SDR] [protein_id=ABK10740.1][location=892176..892895] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_05108</i>&nbsp;&larr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_05109</i>\tks_quality_p_value=1\tlocus_tag=–/–\tmajor_base=C\tmajor_cov=1/4\tmajor_frequency=8.333e-01\tminor_base=G\tminor_cov=1/0\tnew_cov=1/4\tpolymorphism_frequency=8.333e-01\tpolymorphism_score=-5.0\tprediction=consensus\tref_cov=1/0\tsnp_type=intergenic\ttotal_cov=2/4', 'RA\t75\t.\t3\t181113\t0\tG\tA\taa_new_seq=G\taa_position=368\taa_ref_seq=G\tcodon_new_seq=GGT\tcodon_number=368\tcodon_position=3\tcodon_ref_seq=GGC\tconsensus_score=15.0\tfrequency=1\tgene_name=JNAKOBFD_05752\tgene_position=1104\tgene_product=[locus_tag=Bcen2424_5364] [db_xref=InterPro:IPR000014,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR005829,InterPro:IPR013655][protein=methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor] [protein_id=ABK12097.1] [location=complement(2460320..2461864)][gbkey=CDS]\tgene_strand=<\thtml_gene_name=<i>JNAKOBFD_05752</i>&nbsp;&larr;\tmajor_base=A\tmajor_cov=4/2\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/2\tnew_seq=A\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tref_seq=G\tsnp_type=synonymous\ttotal_cov=4/2\ttransl_table=1', 'MC\t95\t.\t5\t1\t1248\t0\t0\tgene_name=JNAKOBFD_06387\tgene_product=JNAKOBFD_06387\thtml_gene_name=<i>JNAKOBFD_06387</i>\tleft_inside_cov=0\tleft_outside_cov=NA\tright_inside_cov=0\tright_outside_cov=NA']
    return expected
def example_gd_file_contents() -> List[str]:
    expected = ['SNP\t1\t13\t1\t598843\tG\tgene_name=JNAKOBFD_00523/JNAKOBFD_00524\tgene_position=intergenic (+4/+95)\tgene_product=[locus_tag=Bcen2424_2337] [db_xref=InterPro:IPR001734] [protein=Na+/solute symporter][protein_id=ABK09088.1] [location=complement(2599928..2601478)][gbkey=CDS]/[locus_tag=Bcen2424_2336] [db_xref=InterPro:IPR004360,InterPro:IPR009725] [protein=Glyoxalase/bleomycin resistance protein/dioxygenase] [protein_id=ABK09087.1][location=2599374..2599829] [gbkey=CDS]\tgenes_promoter=JNAKOBFD_00524\thtml_gene_name=<i>JNAKOBFD_00523</i>&nbsp;&rarr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_00524</i>\tlocus_tag=–/–\tmutation_category=snp_intergenic\tsnp_type=intergenic', 'INS\t2\t16\t1\t1137319\tC\tgene_name=JNAKOBFD_01012\tgene_position=coding (1836/1887 nt)\tgene_product=[locus_tag=Bcen2424_6766] [db_xref=InterPro:IPR002202] [protein=PE-PGRS family protein][protein_id=ABK13495.1] [location=complement(1015331..1019638)][gbkey=CDS]\tgene_strand=<\tgenes_overlapping=JNAKOBFD_01012\thtml_gene_name=<i>JNAKOBFD_01012</i>&nbsp;&larr;\tmutation_category=small_indel\trepeat_length=1\trepeat_new_copies=6\trepeat_ref_copies=5\trepeat_seq=C', 'SNP\t3\t38\t1\t1301313\tA\taa_new_seq=L\taa_position=759\taa_ref_seq=L\tcodon_new_seq=TTG\tcodon_number=759\tcodon_position=1\tcodon_ref_seq=CTG\tgene_name=JNAKOBFD_01153\tgene_position=2275\tgene_product=[locus_tag=Bcen2424_5983] [db_xref=InterPro:IPR005594,InterPro:IPR006162,InterPro:IPR008635,InterPro:IPR008640][protein=YadA C-terminal domain protein][protein_id=ABK12716.1] [location=complement(124247..128662)][gbkey=CDS]\tgene_strand=<\tgenes_overlapping=JNAKOBFD_01153\thtml_gene_name=<i>JNAKOBFD_01153</i>&nbsp;&larr;\tmutation_category=snp_synonymous\tsnp_type=synonymous\ttransl_table=1', 'SNP\t4\t39\t1\t1301317\tC\taa_new_seq=T\taa_position=757\taa_ref_seq=T\tcodon_new_seq=ACG\tcodon_number=757\tcodon_position=3\tcodon_ref_seq=ACC\tgene_name=JNAKOBFD_01153\tgene_position=2271\tgene_product=[locus_tag=Bcen2424_5983] [db_xref=InterPro:IPR005594,InterPro:IPR006162,InterPro:IPR008635,InterPro:IPR008640][protein=YadA C-terminal domain protein][protein_id=ABK12716.1] [location=complement(124247..128662)][gbkey=CDS]\tgene_strand=<\tgenes_overlapping=JNAKOBFD_01153\thtml_gene_name=<i>JNAKOBFD_01153</i>&nbsp;&larr;\tmutation_category=snp_synonymous\tsnp_type=synonymous\ttransl_table=1', 'SNP\t5\t56\t2\t783559\tG\tgene_name=JNAKOBFD_03573/JNAKOBFD_03574\tgene_position=intergenic (+102/-470)\tgene_product=[locus_tag=Bcen2424_0544] [db_xref=InterPro:IPR001753] [protein=short chain enoyl-CoA hydratase] [protein_id=ABK07298.1] [location=605087..605863][gbkey=CDS]/16S ribosomal RNA\tgenes_promoter=JNAKOBFD_03574\thtml_gene_name=<i>JNAKOBFD_03573</i>&nbsp;&rarr;&nbsp;/&nbsp;&rarr;&nbsp;<i>JNAKOBFD_03574</i>\tlocus_tag=–/–\tmutation_category=snp_intergenic\tsnp_type=intergenic', 'SNP\t6\t58\t2\t1595621\tT\taa_new_seq=V\taa_position=111\taa_ref_seq=G\tcodon_new_seq=GTG\tcodon_number=111\tcodon_position=2\tcodon_ref_seq=GGG\tgene_name=JNAKOBFD_04336\tgene_position=332\tgene_product=[locus_tag=Bcen2424_2424] [db_xref=InterPro:IPR003754,InterPro:IPR007470] [protein=protein of unknown function DUF513, hemX] [protein_id=ABK09174.1][location=complement(2688435..2690405)] [gbkey=CDS]\tgene_strand=>\tgenes_overlapping=JNAKOBFD_04336\thtml_gene_name=<i>JNAKOBFD_04336</i>&nbsp;&rarr;\tmutation_category=snp_nonsynonymous\tsnp_type=nonsynonymous\ttransl_table=1', 'SNP\t7\t59\t2\t1595623\tA\taa_new_seq=I\taa_position=112\taa_ref_seq=F\tcodon_new_seq=ATC\tcodon_number=112\tcodon_position=1\tcodon_ref_seq=TTC\tgene_name=JNAKOBFD_04336\tgene_position=334\tgene_product=[locus_tag=Bcen2424_2424] [db_xref=InterPro:IPR003754,InterPro:IPR007470] [protein=protein of unknown function DUF513, hemX] [protein_id=ABK09174.1][location=complement(2688435..2690405)] [gbkey=CDS]\tgene_strand=>\tgenes_overlapping=JNAKOBFD_04336\thtml_gene_name=<i>JNAKOBFD_04336</i>&nbsp;&rarr;\tmutation_category=snp_nonsynonymous\tsnp_type=nonsynonymous\ttransl_table=1', 'SNP\t8\t61\t2\t2478091\tA\tgene_name=JNAKOBFD_05108/JNAKOBFD_05109\tgene_position=intergenic (-161/+83)\tgene_product=[locus_tag=Bcen2424_4005] [db_xref=InterPro:IPR007138] [protein=Antibiotic biosynthesis monooxygenase] [protein_id=ABK10741.1] [location=893139..893474][gbkey=CDS]/[locus_tag=Bcen2424_4004] [db_xref=InterPro:IPR002198,InterPro:IPR002347] [protein=short-chain dehydrogenase/reductase SDR] [protein_id=ABK10740.1][location=892176..892895] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_05108</i>&nbsp;&larr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_05109</i>\tlocus_tag=–/–\tmutation_category=snp_intergenic\tsnp_type=intergenic', 'SNP\t9\t62\t2\t2478103\tC\tgene_name=JNAKOBFD_05108/JNAKOBFD_05109\tgene_position=intergenic (-173/+71)\tgene_product=[locus_tag=Bcen2424_4005] [db_xref=InterPro:IPR007138] [protein=Antibiotic biosynthesis monooxygenase] [protein_id=ABK10741.1] [location=893139..893474][gbkey=CDS]/[locus_tag=Bcen2424_4004] [db_xref=InterPro:IPR002198,InterPro:IPR002347] [protein=short-chain dehydrogenase/reductase SDR] [protein_id=ABK10740.1][location=892176..892895] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_05108</i>&nbsp;&larr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_05109</i>\tlocus_tag=–/–\tmutation_category=snp_intergenic\tsnp_type=intergenic', 'SNP\t10\t75\t3\t181113\tA\taa_new_seq=G\taa_position=368\taa_ref_seq=G\tcodon_new_seq=GGT\tcodon_number=368\tcodon_position=3\tcodon_ref_seq=GGC\tgene_name=JNAKOBFD_05752\tgene_position=1104\tgene_product=[locus_tag=Bcen2424_5364] [db_xref=InterPro:IPR000014,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR005829,InterPro:IPR013655][protein=methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor] [protein_id=ABK12097.1] [location=complement(2460320..2461864)][gbkey=CDS]\tgene_strand=<\tgenes_overlapping=JNAKOBFD_05752\thtml_gene_name=<i>JNAKOBFD_05752</i>&nbsp;&larr;\tmutation_category=snp_synonymous\tsnp_type=synonymous\ttransl_table=1', 'DEL\t11\t95\t5\t1\t1248\tgene_name=JNAKOBFD_06387\tgene_product=JNAKOBFD_06387\tgenes_inactivated=JNAKOBFD_06387\thtml_gene_name=<i>JNAKOBFD_06387</i>\tmutation_category=large_deletion', 'RA\t13\t.\t1\t598843\t0\tA\tG\tconsensus_score=20.7\tfrequency=1\tgene_name=JNAKOBFD_00523/JNAKOBFD_00524\tgene_position=intergenic (+4/+95)\tgene_product=[locus_tag=Bcen2424_2337] [db_xref=InterPro:IPR001734] [protein=Na+/solute symporter][protein_id=ABK09088.1] [location=complement(2599928..2601478)][gbkey=CDS]/[locus_tag=Bcen2424_2336] [db_xref=InterPro:IPR004360,InterPro:IPR009725] [protein=Glyoxalase/bleomycin resistance protein/dioxygenase] [protein_id=ABK09087.1][location=2599374..2599829] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_00523</i>&nbsp;&rarr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_00524</i>\tlocus_tag=–/–\tmajor_base=G\tmajor_cov=4/3\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/3\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tsnp_type=intergenic\ttotal_cov=4/3', 'RA\t16\t.\t1\t1137314\t1\t.\tC\taa_new_seq=G\taa_position=614\taa_ref_seq=V\tbias_e_value=5670690\tbias_p_value=0.804858\tcodon_new_seq=GGG\tcodon_number=614\tcodon_position=2\tcodon_ref_seq=GTG\tconsensus_score=13.5\tfisher_strand_p_value=0.444444\tfrequency=1\tgene_name=JNAKOBFD_01012\tgene_position=1841\tgene_product=[locus_tag=Bcen2424_6766] [db_xref=InterPro:IPR002202] [protein=PE-PGRS family protein][protein_id=ABK13495.1] [location=complement(1015331..1019638)][gbkey=CDS]\tgene_strand=<\thtml_gene_name=<i>JNAKOBFD_01012</i>&nbsp;&larr;\tks_quality_p_value=1\tmajor_base=C\tmajor_cov=5/3\tmajor_frequency=8.889e-01\tminor_base=G\tminor_cov=0/1\tnew_cov=5/3\tnew_seq=C\tpolymorphism_frequency=8.889e-01\tpolymorphism_score=-5.8\tprediction=consensus\tref_cov=0/0\tref_seq=A\tsnp_type=nonsynonymous\ttotal_cov=5/4\ttransl_table=1', 'RA\t38\t.\t1\t1301313\t0\tG\tA\taa_new_seq=L\taa_position=759\taa_ref_seq=L\tcodon_new_seq=TTG\tcodon_number=759\tcodon_position=1\tcodon_ref_seq=CTG\tconsensus_score=15.7\tfrequency=1\tgene_name=JNAKOBFD_01153\tgene_position=2275\tgene_product=[locus_tag=Bcen2424_5983] [db_xref=InterPro:IPR005594,InterPro:IPR006162,InterPro:IPR008635,InterPro:IPR008640][protein=YadA C-terminal domain protein][protein_id=ABK12716.1] [location=complement(124247..128662)][gbkey=CDS]\tgene_strand=<\thtml_gene_name=<i>JNAKOBFD_01153</i>&nbsp;&larr;\tmajor_base=A\tmajor_cov=4/4\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/4\tnew_seq=A\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tref_seq=G\tsnp_type=synonymous\ttotal_cov=4/4\ttransl_table=1', 'RA\t39\t.\t1\t1301317\t0\tG\tC\taa_new_seq=T\taa_position=757\taa_ref_seq=T\tcodon_new_seq=ACG\tcodon_number=757\tcodon_position=3\tcodon_ref_seq=ACC\tconsensus_score=14.0\tfrequency=1\tgene_name=JNAKOBFD_01153\tgene_position=2271\tgene_product=[locus_tag=Bcen2424_5983] [db_xref=InterPro:IPR005594,InterPro:IPR006162,InterPro:IPR008635,InterPro:IPR008640][protein=YadA C-terminal domain protein][protein_id=ABK12716.1] [location=complement(124247..128662)][gbkey=CDS]\tgene_strand=<\thtml_gene_name=<i>JNAKOBFD_01153</i>&nbsp;&larr;\tmajor_base=C\tmajor_cov=4/4\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/4\tnew_seq=C\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tref_seq=G\tsnp_type=synonymous\ttotal_cov=4/4\ttransl_table=1', 'RA\t56\t.\t2\t783559\t0\tA\tG\tconsensus_score=16.5\tfrequency=1\tgene_name=JNAKOBFD_03573/JNAKOBFD_03574\tgene_position=intergenic (+102/-470)\tgene_product=[locus_tag=Bcen2424_0544] [db_xref=InterPro:IPR001753] [protein=short chain enoyl-CoA hydratase] [protein_id=ABK07298.1] [location=605087..605863][gbkey=CDS]/16S ribosomal RNA\thtml_gene_name=<i>JNAKOBFD_03573</i>&nbsp;&rarr;&nbsp;/&nbsp;&rarr;&nbsp;<i>JNAKOBFD_03574</i>\tlocus_tag=–/–\tmajor_base=G\tmajor_cov=4/2\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/2\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tsnp_type=intergenic\ttotal_cov=4/2', 'RA\t58\t.\t2\t1595621\t0\tG\tT\taa_new_seq=V\taa_position=111\taa_ref_seq=G\tbias_e_value=7045580\tbias_p_value=1\tcodon_new_seq=GTG\tcodon_number=111\tcodon_position=2\tcodon_ref_seq=GGG\tconsensus_score=20.2\tfisher_strand_p_value=1\tfrequency=1\tgene_name=JNAKOBFD_04336\tgene_position=332\tgene_product=[locus_tag=Bcen2424_2424] [db_xref=InterPro:IPR003754,InterPro:IPR007470] [protein=protein of unknown function DUF513, hemX] [protein_id=ABK09174.1][location=complement(2688435..2690405)] [gbkey=CDS]\tgene_strand=>\thtml_gene_name=<i>JNAKOBFD_04336</i>&nbsp;&rarr;\tks_quality_p_value=1\tmajor_base=T\tmajor_cov=6/2\tmajor_frequency=8.889e-01\tminor_base=G\tminor_cov=1/0\tnew_cov=6/2\tnew_seq=T\tpolymorphism_frequency=8.889e-01\tpolymorphism_score=-5.9\tprediction=consensus\tref_cov=1/0\tref_seq=G\tsnp_type=nonsynonymous\ttotal_cov=7/2\ttransl_table=1', 'RA\t59\t.\t2\t1595623\t0\tT\tA\taa_new_seq=I\taa_position=112\taa_ref_seq=F\tbias_e_value=7045580\tbias_p_value=1\tcodon_new_seq=ATC\tcodon_number=112\tcodon_position=1\tcodon_ref_seq=TTC\tconsensus_score=18.7\tfisher_strand_p_value=1\tfrequency=1\tgene_name=JNAKOBFD_04336\tgene_position=334\tgene_product=[locus_tag=Bcen2424_2424] [db_xref=InterPro:IPR003754,InterPro:IPR007470] [protein=protein of unknown function DUF513, hemX] [protein_id=ABK09174.1][location=complement(2688435..2690405)] [gbkey=CDS]\tgene_strand=>\thtml_gene_name=<i>JNAKOBFD_04336</i>&nbsp;&rarr;\tks_quality_p_value=1\tmajor_base=A\tmajor_cov=6/2\tmajor_frequency=8.889e-01\tminor_base=T\tminor_cov=1/0\tnew_cov=6/2\tnew_seq=A\tpolymorphism_frequency=8.889e-01\tpolymorphism_score=-5.4\tprediction=consensus\tref_cov=1/0\tref_seq=T\tsnp_type=nonsynonymous\ttotal_cov=7/2\ttransl_table=1', 'RA\t61\t.\t2\t2478091\t0\tT\tA\tbias_e_value=4534860\tbias_p_value=0.643647\tconsensus_score=14.8\tfisher_strand_p_value=0.285714\tfrequency=1\tgene_name=JNAKOBFD_05108/JNAKOBFD_05109\tgene_position=intergenic (-161/+83)\tgene_product=[locus_tag=Bcen2424_4005] [db_xref=InterPro:IPR007138] [protein=Antibiotic biosynthesis monooxygenase] [protein_id=ABK10741.1] [location=893139..893474][gbkey=CDS]/[locus_tag=Bcen2424_4004] [db_xref=InterPro:IPR002198,InterPro:IPR002347] [protein=short-chain dehydrogenase/reductase SDR] [protein_id=ABK10740.1][location=892176..892895] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_05108</i>&nbsp;&larr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_05109</i>\tks_quality_p_value=1\tlocus_tag=–/–\tmajor_base=A\tmajor_cov=1/5\tmajor_frequency=8.571e-01\tminor_base=T\tminor_cov=1/0\tnew_cov=1/5\tpolymorphism_frequency=8.571e-01\tpolymorphism_score=-5.3\tprediction=consensus\tref_cov=1/0\tsnp_type=intergenic\ttotal_cov=2/5', 'RA\t62\t.\t2\t2478103\t0\tG\tC\tbias_e_value=4928640\tbias_p_value=0.699537\tconsensus_score=12.3\tfisher_strand_p_value=0.333333\tfrequency=1\tgene_name=JNAKOBFD_05108/JNAKOBFD_05109\tgene_position=intergenic (-173/+71)\tgene_product=[locus_tag=Bcen2424_4005] [db_xref=InterPro:IPR007138] [protein=Antibiotic biosynthesis monooxygenase] [protein_id=ABK10741.1] [location=893139..893474][gbkey=CDS]/[locus_tag=Bcen2424_4004] [db_xref=InterPro:IPR002198,InterPro:IPR002347] [protein=short-chain dehydrogenase/reductase SDR] [protein_id=ABK10740.1][location=892176..892895] [gbkey=CDS]\thtml_gene_name=<i>JNAKOBFD_05108</i>&nbsp;&larr;&nbsp;/&nbsp;&larr;&nbsp;<i>JNAKOBFD_05109</i>\tks_quality_p_value=1\tlocus_tag=–/–\tmajor_base=C\tmajor_cov=1/4\tmajor_frequency=8.333e-01\tminor_base=G\tminor_cov=1/0\tnew_cov=1/4\tpolymorphism_frequency=8.333e-01\tpolymorphism_score=-5.0\tprediction=consensus\tref_cov=1/0\tsnp_type=intergenic\ttotal_cov=2/4', 'RA\t75\t.\t3\t181113\t0\tG\tA\taa_new_seq=G\taa_position=368\taa_ref_seq=G\tcodon_new_seq=GGT\tcodon_number=368\tcodon_position=3\tcodon_ref_seq=GGC\tconsensus_score=15.0\tfrequency=1\tgene_name=JNAKOBFD_05752\tgene_position=1104\tgene_product=[locus_tag=Bcen2424_5364] [db_xref=InterPro:IPR000014,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR005829,InterPro:IPR013655][protein=methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor] [protein_id=ABK12097.1] [location=complement(2460320..2461864)][gbkey=CDS]\tgene_strand=<\thtml_gene_name=<i>JNAKOBFD_05752</i>&nbsp;&larr;\tmajor_base=A\tmajor_cov=4/2\tmajor_frequency=1.000e+00\tminor_base=N\tminor_cov=0/0\tnew_cov=4/2\tnew_seq=A\tpolymorphism_frequency=1.000e+00\tpolymorphism_score=NA\tprediction=consensus\tref_cov=0/0\tref_seq=G\tsnp_type=synonymous\ttotal_cov=4/2\ttransl_table=1', 'MC\t95\t.\t5\t1\t1248\t0\t0\tgene_name=JNAKOBFD_06387\tgene_product=JNAKOBFD_06387\thtml_gene_name=<i>JNAKOBFD_06387</i>\tleft_inside_cov=0\tleft_outside_cov=NA\tright_inside_cov=0\tright_outside_cov=NA']
    return expected