Datasets:

cambridgeltl
/

linnaeus

Tasks:

Token Classification

Sub-tasks:

named-entity-recognition

Languages:

Size:

License:

Dataset card Files Files and versions Community

albertvillanova HF staff commited on Jun 15, 2023

Commit

974437b

•

1 Parent(s): e4736cd

Update loading script

Files changed (1) hide show

linnaeus.py +3 -2

linnaeus.py CHANGED Viewed

@@ -42,7 +42,8 @@ A novel corpus of full-text documents manually annotated for species mentions.
 """
 _HOMEPAGE = "http://linnaeus.sourceforge.net/"
-_URL = "https://drive.google.com/u/0/uc?id=1OletxmPYNkz2ltOr9pyT0b0iBtUWxslh&export=download"
 _BIOBERT_NER_DATASET_DIRECTORY = "linnaeus"
 _TRAINING_FILE = "train.tsv"
 _DEV_FILE = "devel.tsv"
@@ -130,7 +131,7 @@ class Linnaeus(datasets.GeneratorBasedBuilder):
                     # tokens are tab separated
                     splits = line.split("\t")
                     tokens.append(splits[0])
-                    ner_tags.append(splits[1].rstrip())
             # last example
             yield guid, {
                 "id": str(guid),

 """
 _HOMEPAGE = "http://linnaeus.sourceforge.net/"
+# Source data: https://github.com/cambridgeltl/MTL-Bioinformatics-2016/tree/master/data/linnaeus-IOB
+_URL = "data/linnaeus.zip"
 _BIOBERT_NER_DATASET_DIRECTORY = "linnaeus"
 _TRAINING_FILE = "train.tsv"
 _DEV_FILE = "devel.tsv"
                     # tokens are tab separated
                     splits = line.split("\t")
                     tokens.append(splits[0])
+                    ner_tags.append(splits[1].split("-")[0])
             # last example
             yield guid, {
                 "id": str(guid),