Convert dataset to Parquet (#7)

- Convert dataset to Parquet (5096f0be27dcd3526974a1a89664ac23989f67fd)
- Add 'document' config data files (b62568e5b27a0456d153c2b833735a11e520eb03)
- Delete data file (804f1680f5a93aefb91898a64fa9b7c86c421a6e)
- Delete loading script (25083e46a67562b368874272d2fcf68e13f340d4)
- Delete data file (f795236288cc4c09a9c5ffe29090399b45732903)
- Delete data file (db537d8d0bf73d848195c9c93ece889e99d49dd0)
- Delete data file (655807e6e64707616ef84c675dfb55be50e77803)

README.md

@@ -11,6 +11,61 @@ task_categories:
 task_ids: []
 tags:
 - conditional-text-generation
+dataset_info:
+- config_name: document
+  features:
+  - name: article
+    dtype: string
+  - name: abstract
+    dtype: string
+  splits:
+  - name: train
+    num_bytes: 2236406736
+    num_examples: 119924
+  - name: validation
+    num_bytes: 126510743
+    num_examples: 6633
+  - name: test
+    num_bytes: 126296182
+    num_examples: 6658
+  download_size: 1154975484
+  dataset_size: 2489213661
+- config_name: section
+  features:
+  - name: article
+    dtype: string
+  - name: abstract
+    dtype: string
+  splits:
+  - name: train
+    num_bytes: 2257744955
+    num_examples: 119924
+  - name: validation
+    num_bytes: 127711559
+    num_examples: 6633
+  - name: test
+    num_bytes: 127486937
+    num_examples: 6658
+  download_size: 1163165290
+  dataset_size: 2512943451
+configs:
+- config_name: document
+  data_files:
+  - split: train
+    path: document/train-*
+  - split: validation
+    path: document/validation-*
+  - split: test
+    path: document/test-*
+- config_name: section
+  data_files:
+  - split: train
+    path: section/train-*
+  - split: validation
+    path: section/validation-*
+  - split: test
+    path: section/test-*
+  default: true
 ---
 
 # PubMed dataset for summarization

vocab.zip → document/test-00000-of-00001.parquet

@@ -1,3 +1,3 @@
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-oid sha256:5d25daab57cafba29ff14d3ecd45bdf8d0a3fa882426391f61a891f0817b7a73
-size 295286
+oid sha256:d315d092a3b2d9eeec9cc5869f5526ade3c5b4495693f0f8c7f1de1feeb8e6c3
+size 58464984

train.zip → document/train-00000-of-00005.parquet

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-size 779257354
+oid sha256:4591b521c623947b13e7ad3afd6e86a0f23652948678ed7d0e83283f82725aba
+size 208410135

document/train-00001-of-00005.parquet

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+size 206758528

document/train-00002-of-00005.parquet

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+size 205066365

document/train-00003-of-00005.parquet

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+oid sha256:84d575b13333413de14481d86e9c89be8758ab560a2185f7539f516b55b8ad16
+size 209659032

document/train-00004-of-00005.parquet

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+oid sha256:57e3a00dddda86e39cf0ea48c96553074d3e021876e5f5c5fb65a353c87d5a85
+size 208046540

test.zip → document/validation-00000-of-00001.parquet

@@ -1,3 +1,3 @@
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-oid sha256:fa6666b57d2335a1962f2d8a8511a7bf5f6e457215323645be62457ce8bbfcdf
-size 43787908
+oid sha256:9c748eda2cf4840cdcc272afd917529738ad65ef1cc7b1d79ca8cd3f243ef662
+size 58569900

pubmed-summarization.py

@@ -1,129 +0,0 @@
-import json
-import os
-
-import datasets
-from datasets.tasks import TextClassification
-
-_CITATION = None
-
-
-_DESCRIPTION = """
- PubMed dataset for summarization.
- From paper: A Discourse-Aware Attention Model for Abstractive Summarization of Long Documents" by A. Cohan et al.
- See: https://aclanthology.org/N18-2097.pdf 
- See: https://github.com/armancohan/long-summarization
-"""
-_CITATION = """\
-    @inproceedings{cohan-etal-2018-discourse,
-    title = "A Discourse-Aware Attention Model for Abstractive Summarization of Long Documents",
-    author = "Cohan, Arman  and
-      Dernoncourt, Franck  and
-      Kim, Doo Soon  and
-      Bui, Trung  and
-      Kim, Seokhwan  and
-      Chang, Walter  and
-      Goharian, Nazli",
-    booktitle = "Proceedings of the 2018 Conference of the North {A}merican Chapter of the Association for Computational Linguistics: Human Language Technologies, Volume 2 (Short Papers)",
-    month = jun,
-    year = "2018",
-    address = "New Orleans, Louisiana",
-    publisher = "Association for Computational Linguistics",
-    url = "https://aclanthology.org/N18-2097",
-    doi = "10.18653/v1/N18-2097",
-    pages = "615--621",
-    abstract = "Neural abstractive summarization models have led to promising results in summarizing relatively short documents. We propose the first model for abstractive summarization of single, longer-form documents (e.g., research papers). Our approach consists of a new hierarchical encoder that models the discourse structure of a document, and an attentive discourse-aware decoder to generate the summary. Empirical results on two large-scale datasets of scientific papers show that our model significantly outperforms state-of-the-art models.",
-}
-"""
-_ABSTRACT = "abstract"
-_ARTICLE = "article"
-
-class PubMedSummarizationConfig(datasets.BuilderConfig):
-    """BuilderConfig for PubMedSummarization."""
-
-    def __init__(self, **kwargs):
-        """BuilderConfig for PubMedSummarization.
-        Args:
-          **kwargs: keyword arguments forwarded to super.
-        """
-        super(PubMedSummarizationConfig, self).__init__(**kwargs)
-
-
-class PubMedSummarizationDataset(datasets.GeneratorBasedBuilder):
-    """PubMedSummarization Dataset."""
-    
-    _TRAIN_FILE = "train.zip"
-    _VAL_FILE = "val.zip"
-    _TEST_FILE = "test.zip"
-
-    BUILDER_CONFIGS = [
-        PubMedSummarizationConfig(
-            name="section",
-            version=datasets.Version("1.0.0"),
-            description="PubMed dataset for summarization, concat sections",
-        ),
-        PubMedSummarizationConfig(
-            name="document",
-            version=datasets.Version("1.0.0"),
-            description="PubMed dataset for summarization, document",
-        ),
-    ]
-
-    DEFAULT_CONFIG_NAME = "section"
-
-    def _info(self):
-        # Should return a datasets.DatasetInfo object
-        return datasets.DatasetInfo(
-            description=_DESCRIPTION,
-            features=datasets.Features(
-                {
-                    _ARTICLE: datasets.Value("string"),
-                    _ABSTRACT: datasets.Value("string"),
-                    #"id": datasets.Value("string"),
-                }
-            ),
-            supervised_keys=None,
-            homepage="https://github.com/armancohan/long-summarization",
-            citation=_CITATION,
-        )
-
-    def _split_generators(self, dl_manager):
-
-        train_path = os.path.join(dl_manager.download_and_extract(self._TRAIN_FILE), "train.txt")
-        val_path = os.path.join(dl_manager.download_and_extract(self._VAL_FILE), "val.txt")
-        test_path = os.path.join(dl_manager.download_and_extract(self._TEST_FILE), "test.txt")
-        
-        return [
-            datasets.SplitGenerator(
-                name=datasets.Split.TRAIN, gen_kwargs={"filepath": train_path}
-            ),
-            datasets.SplitGenerator(
-                name=datasets.Split.VALIDATION, gen_kwargs={"filepath": val_path}
-            ),
-            datasets.SplitGenerator(
-                name=datasets.Split.TEST, gen_kwargs={"filepath": test_path}
-            ),
-        ]
-    
-    def _generate_examples(self, filepath):
-        """Generate PubMedSummarization examples."""
-        with open(filepath, encoding="utf-8") as f:
-            for id_, row in enumerate(f):
-                data = json.loads(row)
-
-                """
-                'article_id': str,
-                'abstract_text': List[str],
-                'article_text': List[str],
-                'section_names': List[str],
-                'sections': List[List[str]]
-                """
-                if self.config.name == "document":
-                    article = [d.strip() for d in data["article_text"]]
-                    article = " ".join(article)
-                else:
-                    article = [item.strip() for sublist in data["sections"] for item in sublist]
-                    article = " \n ".join(article)
-
-                abstract = [ab.replace("<S>", "").replace("</S>", "").strip() for ab in data["abstract_text"]]
-                abstract = " \n ".join(abstract)
-                yield id_, {"article": article, "abstract": abstract}

val.zip → section/test-00000-of-00001.parquet

@@ -1,3 +1,3 @@
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section/train-00000-of-00005.parquet

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section/train-00001-of-00005.parquet

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section/train-00003-of-00005.parquet

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section/validation-00000-of-00001.parquet

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