# --------------------------------------------------------------------------
#                   OpenMS -- Open-Source Mass Spectrometry
# --------------------------------------------------------------------------
# Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
# ETH Zurich, and Freie Universitaet Berlin 2002-2018.
#
# This software is released under a three-clause BSD license:
#  * Redistributions of source code must retain the above copyright
#    notice, this list of conditions and the following disclaimer.
#  * Redistributions in binary form must reproduce the above copyright
#    notice, this list of conditions and the following disclaimer in the
#    documentation and/or other materials provided with the distribution.
#  * Neither the name of any author or any participating institution
#    may be used to endorse or promote products derived from this software
#    without specific prior written permission.
# For a full list of authors, refer to the file AUTHORS.
# --------------------------------------------------------------------------
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
# ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
# INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
# EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
# PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
# OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
# WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
# OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
# ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# --------------------------------------------------------------------------
# $Maintainer: Stephan Aiche $
# $Authors: Stephan Aiche $
# --------------------------------------------------------------------------

CMAKE_MINIMUM_REQUIRED (VERSION 2.8)

# include helper functions 
include ( ${SCRIPT_DIR}common.cmake )

set(required_variables "SE_PATH;TARGET_DIRECTORY")
check_variables(required_variables)

file(GLOB_RECURSE se_files "${SE_PATH}/*")
foreach(file ${se_files})  
  # remove the prefix 
  string(REPLACE "${SE_PATH}/" "" trimmed_file ${file})
  
  set(pos -1) 
  ## TODO currently we omit the vcredists and request the user to install
  ## them via the OpenMS dependency installer during plugin install in KNIME
  if(trimmed_file MATCHES ".git/.*" OR trimmed_file MATCHES "vcredist.*")
    string(LENGTH "${CMAKE_MATCH_1}" pos) 
  endif() 
  
  # we only write out line that do not contain our parameter
  if (pos EQUAL -1)  
    # copy
    configure_file(${file} ${TARGET_DIRECTORY}/${trimmed_file} COPYONLY)
  endif()
endforeach() 
