List of protein structure prediction software

This list of protein structure prediction software summarizes notable used software tools in protein structure prediction, including homology modeling, protein threading, "ab initio" methods, secondary structure prediction, and transmembrane helix and signal peptide prediction.
Software list.
Below is a list which separates programs according to the method used for structure prediction.
Secondary structure prediction.
Detailed list of programs can be found at List of protein secondary structure prediction programs