Platynereis dumerilii

Platynereis dumerilii is a species of annelid polychaete worm. It was originally placed into the genus "Nereis" and later reassigned to the genus "Platynereis". "Platynereis dumerilii" lives in coastal marine waters from temperate to tropical zones. It can be found in a wide range from the Azores, the Mediterranean, in the North Sea, the English Channel, and the Atlantic down to the Cape of Good Hope, in the Black Sea, the Red Sea, the Persian Gulf, the Sea of Japan, the Pacific, and the Kerguelen Islands. "Platynereis dumerilii" is today an important lab animal, it is considered as a living fossil, and it is used in many phylogenetic studies as a model organism.
Description.
"Platynereis dumerilii" is a small marine ragworm: Males reach a length of 2 to 3 cm, while females reach a length of 3 to 4 cm. Like a number of invertebrate phyla, "Platynereis dumerilii" has an axochord, a paired longitudinal muscle that displays striking similarities to the notochord regarding position, developmental origin, and expression profile. It has the simplest eyes in the animal kingdom, each of which consists solely of a photoreceptor cell and a pigment cell.
Locomotion.
"P. dumerilii" worms have a ciliated surface which beats synchronously to drive locomotion and fluid flow. Larvae have segmental multiciliated cells that regularly display spontaneous coordinated ciliary arrests, which compose the ciliomotor circuitry in the worms. Whole-body coordination of ciliary locomotion is performed by a "stop-and-go pacemaker system".
As the worms develop, they use chaetae, and then parapodia, for locomotion. Unlike other polychaetes, in "Platynereis" larvae, the parapodia are used only for navigation while the cilia are responsible for propulsive force.
Senses.
Photoreceptor cells.
"Platynereis dumerilii" larvae possess two kinds of photoreceptor cells: Rhabdomeric and ciliary photoreceptor cells.
The ciliary photoreceptor cells are located in the deep brain of the larva. They are not shaded by pigment and thus perceive non-directional light. The ciliary photoreceptor cells resemble molecularly and morphologically the rods and cones of the human eye. Additional, they express an ciliary opsin that is more similar to the visual ciliary opsins of vertebrate rods and cones than to the visual rhabdomeric opsins of invertebrates. Therefore, it is thought that the urbilaterian, the last common ancestor of mollusks, arthropods, and vertebrates already had ciliary photoreceptor cells. The ciliary opsin is UV-sensitive ("λ"max = 383 nm), and the ciliary photoreceptor cells react on non-directional UV-light by making the larvae swimming down. This forms a ratio-chromatic depth-gauge with phototaxis of the rhabdomeric photoreceptor cells of the eyes.
A rhabdomeric photoreceptor cell forms with a pigment cell a simple eye. A pair of these eyes mediate phototaxis in the early "Platynereis dumerilii" trochophore larva. In the later nectochaete larva, phototaxis is mediated by the more complex adult eyes. The adult eyes express at least three opsins: Two rhabdomeric opsins and a Go-opsin. The three opsins there mediate phototaxis all the same way via depolarization, even so a scallop Go-opsin is known to hyperpolarize.
Chemical.
"P. dumerilii" senses chemicals with four types of organs: The antennae, the palps, the nuchal organs, and the tentacular cirri. The cirri are thin tendrils or filaments, while the nuchal organ is a singular ciliated pit.
Appendages of the worm's head and trunk provide a multisensory complex, which detects food and chemical cues such as alcohols, esters, amino acids, and sugars; as well as performing tactile function. Parts of the brain resemble the insect brain.
The antennae perform generalized chemosensation, while the palps are specialized for taste or detection of food-related chemical cues. The cirri are specialized in tactile sensation, but can also provide spatial information about chemical cues. Based on a single stimulus, the left and right cirrus can have a separate response time. The cirri are also photosensitive and involved in the "shadow reflex", a defensive withdrawal behaviour triggered by a decrease in illumination.
Conserved nuchal organs play an important sensory role in annelids, but they are less important in "P. dumerilii" than in other annelids. The antennae are the primary chemosensory organs over the palps, nuchal organs, and cirri 
Habitat.
"Platynereis dumerilii" builds tubes on its substrate. The substrate may be algae-covered hard bottoms, sea grass, pelagic "Sargassum" rafts in the Sargasso Sea, or even rotting plant debris. "Platynereis dumerilii" commonly lives in depths of 0 to 5 meters, and so is typical for shallow bright infra-littoral environments. However, it has been also found on a buoy at 50 meters and on rotting seaweed at 100 m. It may also live in less favorable environments, like at thermal vents or polluted areas near sewer outfall pipes. It dominates polluted areas and acidic areas with pH values around 6.5 fitting the preferred pH value of a subpopulation of late "Platynereis dumerilii" nectochaete larvae. Larvae feed on plankton, and migrate vertically in the ocean in response to changes in light, causing a daily transport of biomass.
Reproduction and Development.
"Platynereis dumerilii" is dioecious, that means it has two separate sexes: During mating, the male swims around the female while the female is swimming in small circles. Both release eggs and sperm into the water. This is triggered by sexual pheromones. The eggs are then fertilized outside of the body in the water. "Platynereis dumerilii" has like other Nereidids no segmental gonades, the oocytes mature freely swimming in the body cavity (coelom), and stain the body of the mature female epitoke yellow.
"Platynereis dumerilii" develops very stereotypically between batches and therefore time can be used to stage "Platynereis dumerilii" larvae. However, the temperature influences the speed of development greatly. Therefore, the following developmental times are given with 18 °C as reference temperature:
After 24 hours, a fertilized egg gives rise to a trochophore larva. At 48 hours, the trochophore larva becomes a metatrochophore larva. Both trochophore and metatrochophore swim with a ring of cilia in the water and are positively phototactic. The metatrochophore has, beside the larval eyes, already the anlagen for the more complex adult eyes of the adult worm. A day later, at 72 hours after fertilization, the metatrochophore larva becomes a nectochaete larva. The nectochaete larva already has three segments, each with a pair of parapodia bearing chaetae, which serve for locomotion. The nectochaete larva can switch from positive to negative phototaxis. After five to seven days, the larvae start feeding and develop on their own speed, depending on food supply. After three to four weeks, when six segments have formed, the head is formed.
Normal development is subdivided into 16 stages. "Platynereis dumerilii" lives for 3 up to 18 months with an average lifespan of seven months. The worm reproduces only once, and dies after delivering its gametes.
Genome.
The genome of "Platynereis dumerilii" is diploid (2n chromosomes) with a haploid set of n = 14 chromosomes. It contains approximately 1 Gbp (giga base pairs) or 10 9 base pairs. This genome size is close to the average observed for other animals. However, compared to many classical invertebrate molecular model organisms, this genome size is rather large and therefore it is a challenge to identify gene regulatory elements that can be far away from the corresponding promoter. But it is intron rich unlike those of "Drosophila melanogaster" and "Caenorhabditis elegans" and thus closer to vertebrate genomes including the human genome.