src/main/java/com/buschmais/jqassistant/plugin/common/api/scanner/ContainerFileResolver.java
public void flush() {
        createHierarchy();
        sync(fileContainerDescriptor.getRequires(), requiredFiles);
        sync(fileContainerDescriptor.getContains(), containedFiles);
    }
public void flush() {
        createHierarchy();
        sync(fileContainerDescriptor.getRequires(), requiredFiles);
        sync(fileContainerDescriptor.getContains(), containedFiles);
    }
Flush the caches to the store.