ipyrad/core/assembly.py
def _tuplecheck(newvalue, dtype=str):
    """
    Takes a string argument and returns value as a tuple.
    Needed for paramfile conversion from CLI to set_params args
    """

    if isinstance(newvalue, list):
        newvalue = tuple(newvalue)

    if isinstance(newvalue, str):
        newvalue = newvalue.rstrip(")").strip("(")
        try:
            newvalue = tuple([dtype(i.strip()) for i in newvalue.split(",")])

        ## Type error is thrown by tuple if it's applied to a non-iterable.
        except TypeError:
            newvalue = tuple(dtype(newvalue))

        ## If dtype fails to cast any element of newvalue
        except ValueError:
            LOGGER.info("Assembly.tuplecheck() failed to cast to {} - {}"\
                        .format(dtype, newvalue))
            raise

        except Exception as inst:
            LOGGER.info(inst)
            raise SystemExit(\
            "\nError: Param`{}` is not formatted correctly.\n({})\n"\
                 .format(newvalue, inst))

    return newvalue
def _tuplecheck(newvalue, dtype=str):
    """
    Takes a string argument and returns value as a tuple.
    Needed for paramfile conversion from CLI to set_params args
    """

    if isinstance(newvalue, list):
        newvalue = tuple(newvalue)

    if isinstance(newvalue, str):
        newvalue = newvalue.rstrip(")").strip("(")
        try:
            newvalue = tuple([dtype(i.strip()) for i in newvalue.split(",")])

        ## Type error is thrown by tuple if it's applied to a non-iterable.
        except TypeError:
            newvalue = tuple(dtype(newvalue))

        ## If dtype fails to cast any element of newvalue
        except ValueError:
            LOGGER.info("Assembly.tuplecheck() failed to cast to {} - {}"\
                        .format(dtype, newvalue))
            raise

        except Exception as inst:
            LOGGER.info(inst)
            raise SystemExit(\
            "\nError: Param`{}` is not formatted correctly.\n({})\n"\
                 .format(newvalue, inst))

    return newvalue
Takes a string argument and returns value as a tuple.
    Needed for paramfile conversion from CLI to set_params args